Package org.anchoranalysis.image.io.bean.stack.reader

Class StackReaderOrientationCorrection

Object

AnchorBean<StackReader>

StackReader

StackReaderOrientationCorrection

Direct Known Subclasses:

BioformatsReader, RotateImageToMatchEXIFOrientation

public abstract class StackReaderOrientationCorrection
extends StackReader

A StackReader that supports the correction of orientation as images are read from the file-system.

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
StackReaderOrientationCorrection()

Method Summary

Modifier and Type	Method	Description
abstract OpenedImageFile	openFile(Path path, CalculateOrientationChange orientationCorrection, ExecutionTimeRecorder executionTimeRecorder)	Opens a file containing one or more images but does not read an image.

Methods inherited from class org.anchoranalysis.image.io.bean.stack.reader.StackReader

openFile, readStack

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

StackReaderOrientationCorrection

public StackReaderOrientationCorrection()

Method Details

openFile

public abstract OpenedImageFile openFile(Path path,
 CalculateOrientationChange orientationCorrection,
 ExecutionTimeRecorder executionTimeRecorder)
                                  throws ImageIOException

Opens a file containing one or more images but does not read an image.

Parameters:

path - where the file is located.

orientationCorrection - calculates any needed correction applied to the orientation as the image is loaded.

executionTimeRecorder - records the execution-times of certain operations.

Returns:

an interface to the opened file that should be closed when no longer in use.

Throws:

ImageIOException - if the file cannot be read.