public class BioformatsReader extends StackReaderOrientationCorrection
Note that EXIF orientation information is not processed when reading JPEGs or PNGs.
Constructor and Description |
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BioformatsReader() |
BioformatsReader(ReadOptions options)
Create with particular options.
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Modifier and Type | Method and Description |
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ReadOptions |
getOptions()
Options that influence how stack is read.
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OpenedImageFile |
openFile(Path filePath,
CalculateOrientationChange orientationCorrection,
ExecutionTimeRecorder executionTimeRecorder)
Opens a file containing one or more images but does not read an image.
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OpenedImageFile |
openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder)
Opens a file containing one or more images.
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void |
setOptions(ReadOptions options)
Options that influence how stack is read.
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readStack
checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString
public BioformatsReader(ReadOptions options)
options
- options that influence how stack is read.public BioformatsReader()
public OpenedImageFile openFile(Path path, ExecutionTimeRecorder executionTimeRecorder) throws ImageIOException
StackReader
This method should run as computationally quicky as possible. Image voxels should not yet be read.
openFile
in class StackReader
path
- where the file is located.executionTimeRecorder
- records the execution-times of certain operations.ImageIOException
- if the file cannot be read.public OpenedImageFile openFile(Path filePath, CalculateOrientationChange orientationCorrection, ExecutionTimeRecorder executionTimeRecorder) throws ImageIOException
StackReaderOrientationCorrection
openFile
in class StackReaderOrientationCorrection
filePath
- where the file is located.orientationCorrection
- calculates any needed correction applied to the orientation as
the image is loaded.executionTimeRecorder
- records the execution-times of certain operations.ImageIOException
- if the file cannot be read.public ReadOptions getOptions()
public void setOptions(ReadOptions options)
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.