Uses of Class
org.anchoranalysis.image.io.bean.stack.writer.StackWriter

Packages that use StackWriter

Package	Description
org.anchoranalysis.image.io.bean.stack.writer	Bean classes for writing raster-files to the filesystem.
org.anchoranalysis.image.io.stack.output.generator	Base classes for generators that ultimately write a Stack to the filesystem.
org.anchoranalysis.io.bioformats.bean.writer	Writing stacks to the file system using the Bioformats library.
org.anchoranalysis.io.imagej.bean.stack.writer	Raster-writers that use ImageJ to write images to the filesystem.
org.anchoranalysis.plugin.io.bean.stack.writer	Implementations of StackWriter.
org.anchoranalysis.plugin.opencv.bean.stack	Implementations of StackWriter and StackReader that involve OpenCV.
org.anchoranalysis.test.image.io	Utilities for testing-related reading and writing to the filesystem.
org.anchoranalysis.test.image.stackwriter	Fixtures for testing StackWriter and related classes.

Uses of StackWriter in org.anchoranalysis.image.io.bean.stack.writer

Subclasses of StackWriter in org.anchoranalysis.image.io.bean.stack.writer

Modifier and Type	Class	Description
class	OneOrThreeChannelsWriter	A base-class for a StackWriter that writes an image that has either one or three channels.

Methods in org.anchoranalysis.image.io.bean.stack.writer with type parameters of type StackWriter

Modifier and Type	Method	Description
static <T extends StackWriter> ImageIOException	WriterErrorMessageHelper.generalWriteException(Class<T> writerClass, Path path, Exception cause)	Creates a ImageIOException with an error message that image-writing failed.

Uses of StackWriter in org.anchoranalysis.image.io.stack.output.generator

Methods in org.anchoranalysis.image.io.stack.output.generator that return StackWriter

Modifier and Type	Method	Description
static StackWriter	GeneratorOutputter.writer(OutputWriteSettings settings)	Gets the default StackWriter.

Uses of StackWriter in org.anchoranalysis.io.bioformats.bean.writer

Subclasses of StackWriter in org.anchoranalysis.io.bioformats.bean.writer

Modifier and Type	Class	Description
class	BioformatsWriter	Base class for writing a stack to the filesystem using the Bioformats library.
class	OMETiff	Writes a stack to the filesystem as an OME-TIFF using the Bioformats library.
class	OMEXML	Writes a stack to the filesystem as an OME-XML using the Bioformats library.
class	Tiff	Writes a stack to the filesystem as a TIFF using the Bioformats library.

Uses of StackWriter in org.anchoranalysis.io.imagej.bean.stack.writer

Subclasses of StackWriter in org.anchoranalysis.io.imagej.bean.stack.writer

Modifier and Type	Class	Description
class	ImageJRasterWriter	Base class for writing a raster using ImageJ.
class	PNG	Writes a PNG image using ImageJ.
class	Tiff	Writes a TIFF image using ImageJ.

Uses of StackWriter in org.anchoranalysis.plugin.io.bean.stack.writer

Subclasses of StackWriter in org.anchoranalysis.plugin.io.bean.stack.writer

Modifier and Type	Class	Description
class	BranchChannels	Uses different raster-writers depending on the number/type of channels.
class	BranchStack	Uses different raster-writers depending on whether it is always 2D (not a z-stack) or possibly 3D.
class	BranchSuggestedFormat	Selects particular writers based on if particular suggested image formats are present.
class	ImageIOWriter
class	StackWriterDelegateBase	A base class for a StackWriter delegates to another StackWriter based on values of a StackWriteAttributes.
class	WriteResolutionXml	When writing a stack, an additional file is written to indicate the physical voxel sizes, if this information is known.

Methods in org.anchoranalysis.plugin.io.bean.stack.writer that return StackWriter

Modifier and Type	Method	Description
StackWriter	BranchChannels.getWhenBinaryChannel()	Writer employed if a stack is a single-channeled binary image.
StackWriter	BranchChannels.getWhenNotEightBit()	Writer employed if a stack contains channels that are not 8-bit.
StackWriter	BranchChannels.getWhenRGB()	Writer employed if a stack is a three-channeled RGB image.
StackWriter	BranchChannels.getWhenRGBAlpha()	Writer employed if a stack is a four-channeled RGBA image.
StackWriter	BranchChannels.getWhenSingleChannel()	Writer employed if a stack is a single-channeled image, not guaranteed to be binary.
StackWriter	BranchChannels.getWhenThreeChannels()	Writer employed if a stack is a three-channeled non-RGB image.
StackWriter	BranchChannels.getWriter()	Default writer, if a more specific writer is not specified for a condition.
StackWriter	WriteResolutionXml.getWriter()
StackWriter	BranchStack.getWriterAlways2D()	Writer to use if it is guaranteed that the image will always be 2D.
StackWriter	BranchStack.getWriterElse()	Otherwise the writer to use.
StackWriter	BranchSuggestedFormat.getWriterIfNoSuggestion()	The writer to use if there is no suggested file-format.
protected StackWriter	BranchChannels.selectDelegate(StackWriteOptions writeOptions)
protected StackWriter	BranchStack.selectDelegate(StackWriteOptions writeOptions)
protected StackWriter	BranchSuggestedFormat.selectDelegate(StackWriteOptions writeOptions)
protected abstract StackWriter	StackWriterDelegateBase.selectDelegate(StackWriteOptions writeOptions)	Selects a StackWriter to use as a delegate.

Methods in org.anchoranalysis.plugin.io.bean.stack.writer that return types with arguments of type StackWriter

Modifier and Type	Method	Description
List<StackWriter>	BranchSuggestedFormat.getWritersIfSuggested()	A list of writers to select if a given format is used

Methods in org.anchoranalysis.plugin.io.bean.stack.writer with parameters of type StackWriter

Modifier and Type	Method	Description
void	BranchChannels.setWhenBinaryChannel(StackWriter whenBinaryChannel)	Writer employed if a stack is a single-channeled binary image.
void	BranchChannels.setWhenNotEightBit(StackWriter whenNotEightBit)	Writer employed if a stack contains channels that are not 8-bit.
void	BranchChannels.setWhenRGB(StackWriter whenRGB)	Writer employed if a stack is a three-channeled RGB image.
void	BranchChannels.setWhenRGBAlpha(StackWriter whenRGBAlpha)	Writer employed if a stack is a four-channeled RGBA image.
void	BranchChannels.setWhenSingleChannel(StackWriter whenSingleChannel)	Writer employed if a stack is a single-channeled image, not guaranteed to be binary.
void	BranchChannels.setWhenThreeChannels(StackWriter whenThreeChannels)	Writer employed if a stack is a three-channeled non-RGB image.
void	BranchChannels.setWriter(StackWriter writer)	Default writer, if a more specific writer is not specified for a condition.
void	WriteResolutionXml.setWriter(StackWriter writer)
void	BranchStack.setWriterAlways2D(StackWriter writerAlways2D)	Writer to use if it is guaranteed that the image will always be 2D.
void	BranchStack.setWriterElse(StackWriter writerElse)	Otherwise the writer to use.
void	BranchSuggestedFormat.setWriterIfNoSuggestion(StackWriter writerIfNoSuggestion)	The writer to use if there is no suggested file-format.

Method parameters in org.anchoranalysis.plugin.io.bean.stack.writer with type arguments of type StackWriter

Modifier and Type	Method	Description
void	BranchSuggestedFormat.setWritersIfSuggested(List<StackWriter> writersIfSuggested)	A list of writers to select if a given format is used

Uses of StackWriter in org.anchoranalysis.plugin.opencv.bean.stack

Subclasses of StackWriter in org.anchoranalysis.plugin.opencv.bean.stack

Modifier and Type	Class	Description
class	OpenCVWriter	Writes a stack to the file-system using OpenCV and a specified extension.

Uses of StackWriter in org.anchoranalysis.test.image.io

Methods in org.anchoranalysis.test.image.io that return StackWriter

Modifier and Type	Method	Description
static StackWriter	BeanInstanceMapFixture.ensureStackWriter(boolean tiff)	Ensure a StackWriter instance exists in the underlying BeanInstanceMap.

Uses of StackWriter in org.anchoranalysis.test.image.stackwriter

Methods in org.anchoranalysis.test.image.stackwriter that return StackWriter

Modifier and Type	Method	Description
protected abstract StackWriter	StackWriterTestBase.createWriter()	Creates the StackWriter to be tested.

Constructors in org.anchoranalysis.test.image.stackwriter with parameters of type StackWriter

Modifier	Constructor	Description
	StackTester(StackWriter writer, Path directoryToWriteTo, String extension, boolean include3D)	Creates a new StackTester instance.