Package | Description |
---|---|
org.anchoranalysis.annotation.io.assignment.generator |
Generates output images to illustrate a
Assignment between annotations. |
org.anchoranalysis.feature.io.csv.table |
A
Generator for writing a table of feature values as a
CSV. |
org.anchoranalysis.image.io.channel.output |
Non-bean classes for writing a
Channel to the
filesystem. |
org.anchoranalysis.image.io.histogram.output |
Non-bean classes for writing a
Histogram to the
filesystem. |
org.anchoranalysis.image.io.object.output.grayscale |
Writing an
ObjectCollection to the filesystem as a
single-channeled stack. |
org.anchoranalysis.image.io.object.output.hdf5 |
Writing an
ObjectCollection to the filesystem in
HDF5 format. |
org.anchoranalysis.image.io.object.output.mask |
Writing an
ObjectCollection to the filesystem as
multiple binary singled-channeled images. |
org.anchoranalysis.image.io.object.output.rgb |
Writing an
ObjectCollection to the filesystem as
RGB raster-images. |
org.anchoranalysis.image.io.stack.output.box |
Base classes for generators that ultimately write only a bounding-box portion of a
Stack to the filesystem. |
org.anchoranalysis.image.io.stack.output.generator |
Base classes for generators that ultimately write a
Stack to the filesystem. |
org.anchoranalysis.io.generator |
Base-classes and utilities for generators, which write different types of objects to the file
system.
|
org.anchoranalysis.io.generator.collection |
Outputting more than one element collectively using a generator.
|
org.anchoranalysis.io.generator.combined |
Combining multiple generators into one.
|
org.anchoranalysis.io.generator.sequence |
Writing a sequence of elements using a generator.
|
org.anchoranalysis.io.generator.serialized |
Generators for writing serialized objects.
|
org.anchoranalysis.io.generator.tabular |
Generators for writing tabular data, including CSV.
|
org.anchoranalysis.io.generator.text |
Generators for writing textual data, including strings.
|
org.anchoranalysis.io.generator.xml |
Generators for writing XML data.
|
org.anchoranalysis.mpp.io.marks.generator | |
org.anchoranalysis.mpp.segment.bean.optimization.feedback |
Providing feedback on the progress of a
OptimizationScheme . |
org.anchoranalysis.plugin.annotation.bean.aggregate |
Beans to combine two or more annotations.
|
Modifier and Type | Class and Description |
---|---|
class |
AssignmentGenerator
Outputs a raster showing an
Assignment on a background. |
Modifier and Type | Class and Description |
---|---|
class |
FeatureTableCSVGenerator<T>
Base class for a
Generator that outputs a feature-table in CSV format. |
Modifier and Type | Class and Description |
---|---|
class |
ChannelGenerator
Writes a single channel to a file.
|
Modifier and Type | Class and Description |
---|---|
class |
HistogramCSVGenerator
Writes a histogram to a CSV file.
|
Modifier and Type | Class and Description |
---|---|
class |
ObjectsAsGrayscaleGenerator
Base class for generators that accept a set of objects as input.
|
class |
ObjectsAsUniqueValueGenerator
Writes objects as an image with an incrementing unique integer id value for each object.
|
class |
ObjectsMergedAsMaskGenerator
Writes objects merged together as a mask.
|
Modifier and Type | Class and Description |
---|---|
class |
HDF5ObjectsGenerator
Writes a
ObjectCollection to a HDF5 file. |
Modifier and Type | Method and Description |
---|---|
static Generator<ObjectCollection> |
ObjectCollectionWriter.generator()
A
Generator which writes an ObjectCollection to the file-system. |
Modifier and Type | Class and Description |
---|---|
class |
ObjectAsMaskGenerator
Writes an object-mask as a mask (i.e.
|
class |
ObjectWithBoundingBoxGenerator
Like
ObjectAsMaskGenerator but additionally outputs a serialized bounding box. |
Modifier and Type | Method and Description |
---|---|
static Generator<ObjectCollection> |
RasterDirectoryObjectsGenerator.create()
|
Modifier and Type | Class and Description |
---|---|
class |
DrawCroppedObjectsGenerator
Similar to
DrawObjectsGenerator , but with the background stack cropped to focus only on
the region containing objects. |
class |
DrawObjectsGenerator
Generates stacks of RGB images using a
DrawObject to draw objects on a background. |
class |
ObjectsAsRGBGenerator
A base class for generators that draw an
ObjectCollection upon a RGBStack . |
Modifier and Type | Class and Description |
---|---|
class |
DrawObjectOnStackGenerator
Creates images of object(s) drawn on a background only in a local region around their bounding
box.
|
class |
ExtractBoundingBoxAreaFromStackGenerator
An iterable-generator that outputs the portion of a stack corresponding to a bounding-box
|
Modifier and Type | Class and Description |
---|---|
class |
DisplayStackGenerator
Writes a display-stack to the filesystem.
|
class |
FlattenStackGenerator
Like a
StackGenerator but first applies a maximum-intensity-projection. |
class |
RasterGenerator<T>
Transforms an entity to a
Stack and writes it to the file-system. |
class |
RasterGeneratorBridge<T,V>
Allows us to call an
RasterGenerator<S> as if it was an RasterGenerator<T> using
an function to connect the two. |
class |
RasterGeneratorDelegateToDisplayStack<T>
Delegates a
RasterGeneratorSelectFormat to a SingleFileTypeGenerator<T,
DisplayStack> . |
class |
RasterGeneratorDelegateToRaster<S,T>
Uses a delegate raster-generator and optionally applies a conversions before calling
RasterGeneratorDelegateToRaster.transform(T) . |
class |
RasterGeneratorSelectFormat<T>
A
RasterGenerator that selects an appropriate output-format based upon each generated
image. |
class |
StackGenerator
Writes a stack to the filesystem.
|
Modifier and Type | Interface and Description |
---|---|
interface |
MultipleFileTypeGenerator<T>
A
Generator that creates multiple different file-types. |
interface |
TransformingGenerator<T,S>
Performs preprocessing to transform the element into another type before being written to the
filesystem.
|
Modifier and Type | Class and Description |
---|---|
class |
GeneratorBridge<S,T>
Exposes a
Generator<T> as if it was an Generator<S> . |
class |
OneStageGenerator<T> |
class |
SingleFileTypeGenerator<T,S>
A
Generator that eventually writes only a single file to the filesystem. |
class |
SingleFileTypeGeneratorBridge<S,T,V>
Allows us to call an
SingleFileTypeGenerator<V,S> as if it was an SingleFileTypeGenerator<T,S> using an function to connect the two. |
class |
TransformingGeneratorBridge<S,T,V>
Allows us to call an
SingleFileTypeGenerator<V,S> as if it was an SingleFileTypeGenerator<T,S> using an function to connect the two. |
Modifier and Type | Method and Description |
---|---|
static <S,T> GeneratorBridge<S,T> |
GeneratorBridge.createOneToMany(Generator<T> generator,
CheckedFunction<S,java.util.stream.Stream<T>,?> bridge)
Creates a bridge that maps ONE-TO-MANY from source to destination (i.e.
|
static <S,T> GeneratorBridge<S,T> |
GeneratorBridge.createOneToOne(Generator<T> generator,
CheckedFunction<S,T,?> bridge)
Creates a bridge that maps ONE-TO-ONE from source to destination (i.e.
|
Modifier and Type | Class and Description |
---|---|
class |
CollectionGenerator<T>
Writes a collection of elements as a subdirectory with each element as a single file in the
subdirectory.
|
Constructor and Description |
---|
CollectionGenerator(Generator<T> generator,
String prefix) |
NamedProviderOutputter(NamedProvider<T> provider,
Generator<T> generator,
OutputterChecked outputter) |
Modifier and Type | Class and Description |
---|---|
class |
CombinedListGenerator<T>
Several generators combined together with a common element-type.
|
Modifier and Type | Method and Description |
---|---|
void |
CombinedListGenerator.add(String name,
Generator<T> element) |
Constructor and Description |
---|
CombinedListGenerator(Generator<T>... generator) |
Constructor and Description |
---|
CombinedListGenerator(NameValue<Generator<T>> namedGenerator) |
CombinedListGenerator(java.util.stream.Stream<NameValue<Generator<T>>> namedGenerators) |
Modifier and Type | Method and Description |
---|---|
Generator<T> |
BoundOutputter.getGenerator()
The generator to be (repeatedly) used to write elements in the sequence.
|
Constructor and Description |
---|
BoundOutputter(OutputterChecked outputter,
OutputPattern outputPattern,
Generator<T> generator) |
OutputSequenceFactory(Generator<T> generator,
OutputterChecked outputter) |
Modifier and Type | Class and Description |
---|---|
class |
DictionaryGenerator
Writes the contents of a
Dictionary to the file-system as XML. |
class |
ObjectOutputStreamGenerator<T extends Serializable> |
class |
SerializedGenerator<T> |
class |
XStreamGenerator<T> |
Modifier and Type | Class and Description |
---|---|
class |
CSVGenerator<T> |
Modifier and Type | Class and Description |
---|---|
class |
StringGenerator |
Modifier and Type | Class and Description |
---|---|
class |
XMLGenerator<T> |
Modifier and Type | Class and Description |
---|---|
class |
MarksAsUniqueValueGenerator |
class |
MarksFlattenedGenerator |
class |
MarksGenerator |
class |
MarksGeneratorBase |
Modifier and Type | Method and Description |
---|---|
protected void |
PeriodicSubdirectoryReporter.initialize(Generator<T> generator)
We setup the sequence-writer.
|
Modifier and Type | Class and Description |
---|---|
class |
AnnotationAggregateCSVGenerator |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.