Uses of Interface
org.anchoranalysis.io.generator.TransformingGenerator

Packages that use TransformingGenerator

Package	Description
org.anchoranalysis.annotation.io.assignment.generator	Generates output images to illustrate a Assignment between annotations.
org.anchoranalysis.feature.io.csv.table	A Generator for writing a table of feature values as a CSV.
org.anchoranalysis.image.io.channel.output	Non-bean classes for writing a Channel to the filesystem.
org.anchoranalysis.image.io.histogram.output	Non-bean classes for writing a Histogram to the filesystem.
org.anchoranalysis.image.io.object.output.grayscale	Writing an ObjectCollection to the filesystem as a single-channeled stack.
org.anchoranalysis.image.io.object.output.hdf5	Writing an ObjectCollection to the filesystem in HDF5 format.
org.anchoranalysis.image.io.object.output.mask	Writing an ObjectCollection to the filesystem as multiple binary singled-channeled images.
org.anchoranalysis.image.io.object.output.rgb	Writing an ObjectCollection to the filesystem as RGB raster-images.
org.anchoranalysis.image.io.stack.output.box	Base classes for generators that ultimately write only a bounding-box portion of a Stack to the filesystem.
org.anchoranalysis.image.io.stack.output.generator	Base classes for generators that ultimately write a Stack to the filesystem.
org.anchoranalysis.io.generator	Base-classes and utilities for generators, which write different types of objects to the file system.
org.anchoranalysis.io.generator.serialized	Generators for writing serialized objects.
org.anchoranalysis.io.generator.tabular	Generators for writing tabular data, including CSV.
org.anchoranalysis.io.generator.text	Generators for writing textual data, including strings.
org.anchoranalysis.io.generator.xml	Generators for writing XML data.
org.anchoranalysis.plugin.annotation.bean.aggregate	Beans to combine two or more annotations.

Uses of TransformingGenerator in org.anchoranalysis.annotation.io.assignment.generator

Classes in org.anchoranalysis.annotation.io.assignment.generator that implement TransformingGenerator

Modifier and Type	Class	Description
class	AssignmentGenerator	Outputs a raster showing an Assignment on a background.

Uses of TransformingGenerator in org.anchoranalysis.feature.io.csv.table

Classes in org.anchoranalysis.feature.io.csv.table that implement TransformingGenerator

Modifier and Type	Class	Description
class	FeatureTableCSVGenerator<T>	Base class for a Generator that outputs a feature-table in CSV format.

Uses of TransformingGenerator in org.anchoranalysis.image.io.channel.output

Classes in org.anchoranalysis.image.io.channel.output that implement TransformingGenerator

Modifier and Type	Class	Description
class	ChannelGenerator	Writes a single channel to a file.

Uses of TransformingGenerator in org.anchoranalysis.image.io.histogram.output

Classes in org.anchoranalysis.image.io.histogram.output that implement TransformingGenerator

Modifier and Type	Class	Description
class	HistogramCSVGenerator	Writes a histogram to a CSV file.

Uses of TransformingGenerator in org.anchoranalysis.image.io.object.output.grayscale

Classes in org.anchoranalysis.image.io.object.output.grayscale that implement TransformingGenerator

Modifier and Type	Class	Description
class	ObjectsAsGrayscaleGenerator	Base class for generators that accept a set of objects as input.
class	ObjectsAsUniqueValueGenerator	Writes objects as an image with an incrementing unique integer id value for each object.
class	ObjectsMergedAsMaskGenerator	Writes objects merged together as a mask.

Uses of TransformingGenerator in org.anchoranalysis.image.io.object.output.hdf5

Classes in org.anchoranalysis.image.io.object.output.hdf5 that implement TransformingGenerator

Modifier and Type	Class	Description
class	HDF5ObjectsGenerator	A generator that writes a ObjectCollection to a HDF5 file.

Uses of TransformingGenerator in org.anchoranalysis.image.io.object.output.mask

Classes in org.anchoranalysis.image.io.object.output.mask that implement TransformingGenerator

Modifier and Type	Class	Description
class	ObjectAsMaskGenerator	Writes an object-mask as a mask (i.e. as a raster image)

Uses of TransformingGenerator in org.anchoranalysis.image.io.object.output.rgb

Classes in org.anchoranalysis.image.io.object.output.rgb that implement TransformingGenerator

Modifier and Type	Class	Description
class	DrawCroppedObjectsGenerator	Similar to DrawObjectsGenerator, but with the background stack cropped to focus only on the region containing objects.
class	DrawObjectsGenerator	Generates stacks of RGB images using a DrawObject to draw objects on a background.
class	ObjectsAsRGBGenerator	A base class for generators that draw an ObjectCollection upon a RGBStack.

Uses of TransformingGenerator in org.anchoranalysis.image.io.stack.output.box

Classes in org.anchoranalysis.image.io.stack.output.box that implement TransformingGenerator

Modifier and Type	Class	Description
class	DrawObjectOnStackGenerator	Creates images of object(s) drawn on a background only in a local region around their bounding box.
class	ExtractBoundingBoxAreaFromStackGenerator	An iterable-generator that outputs the portion of a stack corresponding to a bounding-box

Methods in org.anchoranalysis.image.io.stack.output.box with parameters of type TransformingGenerator

Modifier and Type	Method	Description
static DrawObjectOnStackGenerator	DrawObjectOnStackGenerator.createFromGenerator(TransformingGenerator<BoundingBox,Stack> backgroundGenerator, int outlineWidth, ColorIndex colors)	Creates an extracted-object generator that draws an outline - with default color green and flattened in Z.

Uses of TransformingGenerator in org.anchoranalysis.image.io.stack.output.generator

Classes in org.anchoranalysis.image.io.stack.output.generator that implement TransformingGenerator

Modifier and Type	Class	Description
class	DisplayStackGenerator	Writes a display-stack to the filesystem.
class	FlattenStackGenerator	Like a StackGenerator but first applies a maximum-intensity-projection.
class	RasterGenerator<T>	Transforms an entity to a Stack and writes it to the file-system.
class	RasterGeneratorBridge<T,V>	Allows us to call an RasterGenerator<S> as if it was an RasterGenerator<T> using an function to connect the two.
class	RasterGeneratorDelegateToDisplayStack<T>	Delegates a RasterGeneratorSelectFormat to a SingleFileTypeGenerator<T, DisplayStack>.
class	RasterGeneratorDelegateToRaster<S,T>	Uses a delegate raster-generator and optionally applies a conversions before calling RasterGeneratorDelegateToRaster.transform(T).
class	RasterGeneratorSelectFormat<T>	A RasterGenerator that selects an appropriate output-format based upon each generated image.
class	StackGenerator	Writes a stack to the filesystem.

Uses of TransformingGenerator in org.anchoranalysis.io.generator

Classes in org.anchoranalysis.io.generator that implement TransformingGenerator

Modifier and Type	Class	Description
class	OneStageGenerator<T>	A SingleFileTypeGenerator that does not transform an element before generating.
class	SingleFileTypeGenerator<T,S>	A Generator that eventually writes only a single file to the filesystem.
class	SingleFileTypeGeneratorBridge<S,T,V>	Allows us to call an SingleFileTypeGenerator<V,S> as if it was an SingleFileTypeGenerator<T,S> using an function to connect the two.
class	TransformingGeneratorBridge<S,T,V>	Allows us to call an SingleFileTypeGenerator<V,S> as if it was an SingleFileTypeGenerator<T,S> using an function to connect the two.

Constructors in org.anchoranalysis.io.generator with parameters of type TransformingGenerator

Modifier	Constructor	Description
	TransformingGeneratorBridge(TransformingGenerator<V,S> delegate, CheckedFunction<T,V,? extends Throwable> elementBridge)

Uses of TransformingGenerator in org.anchoranalysis.io.generator.serialized

Classes in org.anchoranalysis.io.generator.serialized that implement TransformingGenerator

Modifier and Type	Class	Description
class	DictionaryGenerator	A generator that writes the contents of a Dictionary to the file-system as XML.
class	ObjectOutputStreamGenerator<T extends Serializable>	Generator that writes an element to the file-system using the Java ObjectOutputStream format.
class	SerializedGenerator<T>	A generator that writes binary serialized files to the file-system.
class	XStreamGenerator<T>	A generator that serialized using the XStream library and format.

Uses of TransformingGenerator in org.anchoranalysis.io.generator.tabular

Classes in org.anchoranalysis.io.generator.tabular that implement TransformingGenerator

Modifier and Type	Class	Description
class	CSVGenerator<T>	A generator that writes the contents of a CSV file to the file-system.

Uses of TransformingGenerator in org.anchoranalysis.io.generator.text

Classes in org.anchoranalysis.io.generator.text that implement TransformingGenerator

Modifier and Type	Class	Description
class	StringGenerator	A generator that writes the contents of a String to the file-system as text-file.

Uses of TransformingGenerator in org.anchoranalysis.io.generator.xml

Classes in org.anchoranalysis.io.generator.xml that implement TransformingGenerator

Modifier and Type	Class	Description
class	XMLGenerator<T>	A generator that writes the contents of a XML file to the file-system.

Uses of TransformingGenerator in org.anchoranalysis.plugin.annotation.bean.aggregate

Classes in org.anchoranalysis.plugin.annotation.bean.aggregate that implement TransformingGenerator

Modifier and Type	Class	Description
class	AnnotationAggregateCSVGenerator	Generates a CSV file containing aggregated annotation data.