Uses of Class
org.anchoranalysis.mpp.bean.regionmap.RegionMap

Packages that use RegionMap

Package	Description
org.anchoranalysis.mpp.bean.regionmap	Voxel subregions of Marks.
org.anchoranalysis.mpp.feature.bean.energy.scheme	Creating EnergySchemes.
org.anchoranalysis.mpp.feature.energy.scheme	Factorized form of storing the energy during an energy-minimization optimization scheme.
org.anchoranalysis.mpp.feature.mark	Non-bean classes for calculating feature-values related to Marks.
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.mark.voxelized	A mark after a voxel-representation has been inferred.
org.anchoranalysis.mpp.mark.voxelized.memo	Memoization of VoxelizedMarks.
org.anchoranalysis.mpp.proposer	Non-bean classes for proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.plugin.mpp.bean.object.provider	Implementations of ObjectCollectionProvider.

Uses of RegionMap in org.anchoranalysis.mpp.bean.regionmap

Methods in org.anchoranalysis.mpp.bean.regionmap that return RegionMap

Modifier and Type	Method	Description
static RegionMap	RegionMapSingleton.instance()	Gets the singleton instance of RegionMap.

Uses of RegionMap in org.anchoranalysis.mpp.feature.bean.energy.scheme

Methods in org.anchoranalysis.mpp.feature.bean.energy.scheme that return RegionMap

Modifier and Type	Method	Description
RegionMap	EnergySchemeCreatorByElement.getRegionMap()	Mapping of regions.

Methods in org.anchoranalysis.mpp.feature.bean.energy.scheme with parameters of type RegionMap

Modifier and Type	Method	Description
void	EnergySchemeCreatorByElement.setRegionMap(RegionMap regionMap)	Mapping of regions.

Uses of RegionMap in org.anchoranalysis.mpp.feature.energy.scheme

Methods in org.anchoranalysis.mpp.feature.energy.scheme that return RegionMap

Modifier and Type	Method	Description
RegionMap	EnergyScheme.getRegionMap()	The region map used in the energy scheme.
RegionMap	EnergySchemeWithSharedFeatures.getRegionMap()	Gets the region map from the energy scheme.

Constructors in org.anchoranalysis.mpp.feature.energy.scheme with parameters of type RegionMap

Modifier	Constructor	Description
	EnergyScheme(FeatureList<FeatureInputSingleMemo> individual, FeatureList<FeatureInputPairMemo> pair, FeatureList<FeatureInputAllMemo> all, RegionMap regionMap, AddCriteriaPair pairAddCriteria)	Creates an energy scheme with the specified features and region map.
	EnergyScheme(FeatureList<FeatureInputSingleMemo> individual, FeatureList<FeatureInputPairMemo> pair, FeatureList<FeatureInputAllMemo> all, RegionMap regionMap, AddCriteriaPair pairAddCriteria, Optional<DictionaryProvider> dictionary, List<NamedBean<Feature<FeatureInputStack>>> listImageFeatures)	Creates an energy scheme with the specified features, region map, and additional options.

Uses of RegionMap in org.anchoranalysis.mpp.feature.mark

Methods in org.anchoranalysis.mpp.feature.mark that return RegionMap

Modifier and Type	Method	Description
RegionMap	EnergyMemoList.getRegionMap()	Gets the region map associated with this energy memo list.

Uses of RegionMap in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark with parameters of type RegionMap

Modifier and Type	Method	Description
MarkCollection	MarkCollection.marksAt(Point3i point, RegionMap regionMap, int regionID)	Finds marks at a specific point that belong to a specific region.

Uses of RegionMap in org.anchoranalysis.mpp.mark.voxelized

Methods in org.anchoranalysis.mpp.mark.voxelized with parameters of type RegionMap

Modifier and Type	Method	Description
static VoxelizedMarkHistogram	VoxelizedMarkFactory.create(Mark mark, EnergyStackWithoutParameters stack, RegionMap regionMap)	Creates a new VoxelizedMarkHistogram instance.

Uses of RegionMap in org.anchoranalysis.mpp.mark.voxelized.memo

Methods in org.anchoranalysis.mpp.mark.voxelized.memo that return RegionMap

Modifier and Type	Method	Description
RegionMap	VoxelizedMarkMemo.getRegionMap()	The region map.

Methods in org.anchoranalysis.mpp.mark.voxelized.memo with parameters of type RegionMap

Modifier and Type	Method	Description
static VoxelizedMarkMemo	VoxelizedMarkMemoFactory.create(Mark mark, EnergyStackWithoutParameters stack, RegionMap regionMap)	Creates a new VoxelizedMarkMemo instance.

Constructors in org.anchoranalysis.mpp.mark.voxelized.memo with parameters of type RegionMap

Modifier	Constructor	Description
	VoxelizedMarkMemo(Mark mark, EnergyStackWithoutParameters stack, RegionMap regionMap)	Creates a new VoxelizedMarkMemo.

Uses of RegionMap in org.anchoranalysis.mpp.proposer

Methods in org.anchoranalysis.mpp.proposer that return RegionMap

Modifier and Type	Method	Description
RegionMap	ProposerContext.getRegionMap()	Region map for the current context.

Constructors in org.anchoranalysis.mpp.proposer with parameters of type RegionMap

Modifier	Constructor	Description
	ProposerContext(RandomNumberGenerator randomNumberGenerator, EnergyStack energyStack, RegionMap regionMap, OperationContext operationContext, ErrorNode errorNode)	Creates a new ProposerContext instance.

Uses of RegionMap in org.anchoranalysis.plugin.mpp.bean.object.provider

Methods in org.anchoranalysis.plugin.mpp.bean.object.provider that return RegionMap

Modifier and Type	Method	Description
RegionMap	FromMarks.getRegionMap()

Methods in org.anchoranalysis.plugin.mpp.bean.object.provider with parameters of type RegionMap

Modifier and Type	Method	Description
void	FromMarks.setRegionMap(RegionMap regionMap)