Package org.anchoranalysis.plugin.image.bean.object.provider.merge

Class MergeToIncreaseObjectFeature

Object

AnchorBean<ObjectCollectionProvider>

InitializableBean<ObjectCollectionProvider,ImageInitialization>

ImageBean<ObjectCollectionProvider>

ObjectCollectionProvider

ObjectCollectionProviderUnary

WithContainerBase

MergeBase

MergeWithOptionalDistanceConstraint

MergeWithFeature

MergeToIncreaseObjectFeature

All Implemented Interfaces:

Provider<ObjectCollection>

public class MergeToIncreaseObjectFeature
extends MergeWithFeature

Merges neighboring objects if it results in an increase in the average feature-value calculated on each single object.

A merge occurs if feature(merged) >= avg( feature(object1), feature(object2).

These merges occur in order of the maximum increase offered, and the algorithm recursively merge until all possible merges are complete.

The feature-value is calculated for each object that is a vertex of the graph (including all prospective merges of neighbors).

Author:

Owen Feehan

Nested Class Summary

Nested classes/interfaces inherited from class org.anchoranalysis.plugin.image.bean.object.provider.merge.MergeBase

MergeBase.MergeObjects

Constructor Summary

Constructors

Constructor	Description
MergeToIncreaseObjectFeature()

Method Summary

Modifier and Type	Method	Description
protected PayloadCalculator	createPayloadCalculator()	Determines the payload for any given or potential vertex.
protected AssignPriority	createPrioritizer()	Determines the priority (and selection criteria) used to allow merges between neighbors.
FeatureEvaluator<FeatureInputSingleObject>	getFeatureEvaluator()
protected boolean	isPlayloadUsed()	Checks if the payload is considered in making decisions.
void	setFeatureEvaluator(FeatureEvaluator<FeatureInputSingleObject> featureEvaluator)

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.merge.MergeWithFeature

createFromObjects, isRequireBBoxNeighbors, isRequireTouching, setRequireBBoxNeighbors, setRequireTouching

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.merge.MergeWithOptionalDistanceConstraint

getMaxDistance, isSuppressZ, maybeDistanceCondition, setMaxDistance, setSuppressZ

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.merge.MergeBase

getDimensions, mergeMultiplex, resolutionRequired, setDimensions, unitConvertOptional

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.WithContainerBase

containerOptional, containerRequired, getObjectsContainer, setObjectsContainer

Methods inherited from class org.anchoranalysis.image.bean.provider.ObjectCollectionProviderUnary

get, getObjects, setObjects

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MergeToIncreaseObjectFeature

public MergeToIncreaseObjectFeature()

Method Details

createPayloadCalculator

protected PayloadCalculator createPayloadCalculator()
                                             throws OperationFailedException

Description copied from class: MergeWithFeature

Determines the payload for any given or potential vertex.

Specified by:

createPayloadCalculator in class MergeWithFeature

Returns:

a PayloadCalculator for determining vertex payloads

Throws:

OperationFailedException - if the payload calculator cannot be created

createPrioritizer

protected AssignPriority createPrioritizer()
                                    throws OperationFailedException

Description copied from class: MergeWithFeature

Determines the priority (and selection criteria) used to allow merges between neighbors.

Specified by:

createPrioritizer in class MergeWithFeature

Returns:

an AssignPriority for determining merge priorities

Throws:

OperationFailedException - if the prioritizer cannot be created

isPlayloadUsed

protected boolean isPlayloadUsed()

Description copied from class: MergeWithFeature

Checks if the payload is considered in making decisions.

Specified by:

isPlayloadUsed in class MergeWithFeature

Returns:

true if the payload is used, false if the payload of nodes is irrelevant

getFeatureEvaluator

public FeatureEvaluator<FeatureInputSingleObject> getFeatureEvaluator()

setFeatureEvaluator

public void setFeatureEvaluator(FeatureEvaluator<FeatureInputSingleObject> featureEvaluator)