Package org.anchoranalysis.plugin.image.bean.object.provider.merge

Class MergeWithFeature

Object

AnchorBean<ObjectCollectionProvider>

InitializableBean<ObjectCollectionProvider,ImageInitialization>

ImageBean<ObjectCollectionProvider>

ObjectCollectionProvider

ObjectCollectionProviderUnary

WithContainerBase

MergeBase

MergeWithOptionalDistanceConstraint

MergeWithFeature

All Implemented Interfaces:

Provider<ObjectCollection>

Direct Known Subclasses:

MergePairs, MergeToIncreaseObjectFeature

public abstract class MergeWithFeature
extends MergeWithOptionalDistanceConstraint

Base class for object-merging strategies that involve calculating a feature.

Author:

Owen Feehan

Nested Class Summary

Nested classes/interfaces inherited from class org.anchoranalysis.plugin.image.bean.object.provider.merge.MergeBase

MergeBase.MergeObjects

Constructor Summary

Constructors

Constructor	Description
MergeWithFeature()

Method Summary

Modifier and Type	Method	Description
ObjectCollection	createFromObjects(ObjectCollection objectsSource)	Creates a ObjectCollection given the entity provided by the delegate.
protected abstract PayloadCalculator	createPayloadCalculator()	Determines the payload for any given or potential vertex.
protected abstract AssignPriority	createPrioritizer()	Determines the priority (and selection criteria) used to allow merges between neighbors.
protected abstract boolean	isPlayloadUsed()	Checks if the payload is considered in making decisions.
boolean	isRequireBBoxNeighbors()	Requires for any potential merge that the bounding-boxes of the two objects must intersect or touch.
boolean	isRequireTouching()	Requires the object-masks to touch.
void	setRequireBBoxNeighbors(boolean requireBBoxNeighbors)	Requires for any potential merge that the bounding-boxes of the two objects must intersect or touch.
void	setRequireTouching(boolean requireTouching)	Requires the object-masks to touch.

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.merge.MergeWithOptionalDistanceConstraint

getMaxDistance, isSuppressZ, maybeDistanceCondition, setMaxDistance, setSuppressZ

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.merge.MergeBase

getDimensions, mergeMultiplex, resolutionRequired, setDimensions, unitConvertOptional

Methods inherited from class org.anchoranalysis.plugin.image.bean.object.provider.WithContainerBase

containerOptional, containerRequired, getObjectsContainer, setObjectsContainer

Methods inherited from class org.anchoranalysis.image.bean.provider.ObjectCollectionProviderUnary

get, getObjects, setObjects

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

MergeWithFeature

public MergeWithFeature()

Method Details

createFromObjects

public ObjectCollection createFromObjects(ObjectCollection objectsSource)
                                   throws ProvisionFailedException

Description copied from class: ObjectCollectionProviderUnary

Creates a ObjectCollection given the entity provided by the delegate.

Specified by:

createFromObjects in class ObjectCollectionProviderUnary

Parameters:

objectsSource - the entity provided by the delegate.

Returns:

the created ObjectCollection that is returned by the provider.

Throws:

ProvisionFailedException - if the provider cannot complete successfully.

createPayloadCalculator

protected abstract PayloadCalculator createPayloadCalculator()
                                                      throws OperationFailedException

Determines the payload for any given or potential vertex.

Returns:

a PayloadCalculator for determining vertex payloads

Throws:

OperationFailedException - if the payload calculator cannot be created

createPrioritizer

protected abstract AssignPriority createPrioritizer()
                                             throws OperationFailedException

Determines the priority (and selection criteria) used to allow merges between neighbors.

Returns:

an AssignPriority for determining merge priorities

Throws:

OperationFailedException - if the prioritizer cannot be created

isPlayloadUsed

protected abstract boolean isPlayloadUsed()

Checks if the payload is considered in making decisions.

Returns:

true if the payload is used, false if the payload of nodes is irrelevant

isRequireBBoxNeighbors

public boolean isRequireBBoxNeighbors()

Requires for any potential merge that the bounding-boxes of the two objects must intersect or touch.

setRequireBBoxNeighbors

public void setRequireBBoxNeighbors(boolean requireBBoxNeighbors)

Requires for any potential merge that the bounding-boxes of the two objects must intersect or touch.

isRequireTouching

public boolean isRequireTouching()

Requires the object-masks to touch. More expensive to calculate than the requireBBoxNeighbors condition.

setRequireTouching

public void setRequireTouching(boolean requireTouching)

Requires the object-masks to touch. More expensive to calculate than the requireBBoxNeighbors condition.