Package | Description |
---|---|
org.anchoranalysis.image.bean.spatial |
Beans to define entities or operate that consider Euclidian space.
|
org.anchoranalysis.image.bean.spatial.arrange.align |
Aligning a
BoundingBox to fit inside another BoundingBox . |
org.anchoranalysis.image.bean.unitvalue.distance |
Converting quantities of distance between units.
|
org.anchoranalysis.image.core.dimensions |
Classes to describe the size of images or components of images both in voxels and physically.
|
org.anchoranalysis.image.core.mask |
An image with only two permissible states.
|
org.anchoranalysis.image.core.object |
The key data entity
org.anchoranalysis.image.voxel.object and related-classes and
operations. |
org.anchoranalysis.image.core.object.label |
Labelling elements (object-masks or similar) with unique successive integers in a channel.
|
org.anchoranalysis.image.core.object.scale |
Scaling object-collections, or lists of elements with object-representations.
|
org.anchoranalysis.image.core.points |
Operations that extract points from image data entities or vice versa.
|
org.anchoranalysis.image.core.stack |
Defines the key data object,
Stack , and related
classes. |
org.anchoranalysis.image.io.object |
Non-bean classes for reading / writing an
ObjectCollection from and to the filesystem. |
org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
org.anchoranalysis.image.voxel.assigner |
Assigns values to some or all voxels.
|
org.anchoranalysis.image.voxel.binary |
The
BinaryVoxels class and related operations. |
org.anchoranalysis.image.voxel.extracter |
Methods to read/copy/duplicate portions of voxels.
|
org.anchoranalysis.image.voxel.extracter.predicate |
Methods to find or count voxels that satisfy a predicate.
|
org.anchoranalysis.image.voxel.iterator |
Utilities to iterate over voxel-locations in images and sub-regions of images.
|
org.anchoranalysis.image.voxel.iterator.intersecting |
Like
org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over
the intersecting regions of two entities. |
org.anchoranalysis.image.voxel.iterator.neighbor |
Iterating over a point's neighboring voxels.
|
org.anchoranalysis.image.voxel.iterator.neighbor.kernel |
Routines for moving a
KernelPointCursor around the
neighboring voxels of the point. |
org.anchoranalysis.image.voxel.iterator.predicate |
Functional-interfaces for processing different combinations of points and buffers that return a
boolean.
|
org.anchoranalysis.image.voxel.iterator.process |
Functional-interfaces for processing different combinations of points and buffers that do not
return a value.
|
org.anchoranalysis.image.voxel.iterator.process.buffer |
Functional-interfaces for processing different combinations of points and raw buffers, but not
VoxelBuffer . |
org.anchoranalysis.image.voxel.iterator.process.voxelbuffer |
Functional-interfaces for processing different combinations of points and
VoxelBuffer but not raw buffers. |
org.anchoranalysis.image.voxel.kernel |
Applying a kernel via
convolution to voxels.
|
org.anchoranalysis.image.voxel.kernel.count |
Kernels to count the number of voxels that are equal to a particular value.
|
org.anchoranalysis.image.voxel.kernel.morphological |
Kernels that apply morphological operations.
|
org.anchoranalysis.image.voxel.object |
The fundamental data class that is an
ObjectMask
and related structures. |
org.anchoranalysis.image.voxel.object.morphological |
Morphological operations
applied to
ObjectMask s. |
org.anchoranalysis.mpp.bean.points.fitter |
Fitting structures to sets of points.
|
org.anchoranalysis.mpp.bean.proposer |
Proposing
Mark s or other data-structures with particular
attributes. |
org.anchoranalysis.mpp.mark |
Non-bean classes related to
Mark s. |
org.anchoranalysis.mpp.mark.conic |
Mark s implementing conic sections. |
org.anchoranalysis.mpp.mark.points |
Mark s implementing structures based on points. |
org.anchoranalysis.mpp.proposer |
Non-bean classes for proposing
Mark s or other data-structures
with particular attributes. |
org.anchoranalysis.plugin.image.bean.mask.provider.morphological |
Implementations of
MaskProvider that implement
morphological operations. |
org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox |
Implementations of
FeatureSingleObject that consider an
object's bounding-box. |
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient |
Implementations of
FeatureSingleObject that measure an object's
gradient from corresponding Channel s storing the
gradient. |
org.anchoranalysis.plugin.image.intensity.level |
Non-beans for calculating a thresholding level from itensity values.
|
org.anchoranalysis.plugin.image.segment.watershed.encoding |
Encoding voxels in a watershed-transformation implementation.
|
org.anchoranalysis.plugin.mpp.bean.check |
Implementations of
CheckMark . |
org.anchoranalysis.plugin.mpp.bean.contour |
Retrieving the contour outline pixels along the exterior outer contour of an
ObjectMask . |
org.anchoranalysis.plugin.mpp.bean.contour.visitscheduler |
The
VisitScheduler and related
classes, as used in TraverseOuterContourOnImage . |
org.anchoranalysis.plugin.mpp.bean.proposer.points |
Implementations of
PointsProposer . |
org.anchoranalysis.plugin.mpp.bean.proposer.points.contour |
Finding a point on the external outer contour of an
ObjectMask . |
org.anchoranalysis.plugin.mpp.bean.proposer.points.fromorientation |
PointsFromOrientationProposer
and implementations. |
org.anchoranalysis.plugin.mpp.bean.proposer.position |
Implementations of
PositionProposer involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.bean.proposer.radii |
Implementations of
RadiiProposer involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.contour |
Performs a walk on every voxel on the contour of an object-mask.
|
org.anchoranalysis.plugin.mpp.contour.distance |
A list of visited pixels which forms one contiguous path where each voxel neighbors each other.
|
org.anchoranalysis.plugin.mpp.contour.path |
A set of contiguously neighboring points along the outline of an object.
|
org.anchoranalysis.plugin.mpp.contour.path.merge.strategy |
Strategies on which
ContiguousVoxelPath should
be prioritized for merging. |
org.anchoranalysis.plugin.mpp.feature.bean.mark.direction |
Implementations of
FeatureMark to measure
direction. |
org.anchoranalysis.plugin.opencv |
Plugins that call OpenCV.
|
org.anchoranalysis.plugin.points.bean.fitter |
Fitting geometric structures to points.
|
org.anchoranalysis.plugin.points.calculate.ellipsoid |
CalculationPart related to fitting
ellipsoids to points by least-squares. |
org.anchoranalysis.plugin.points.convexhull |
Non-bean convex hull operations.
|
org.anchoranalysis.spatial.box |
Axis-aligned bounding-boxes and related operations.
|
org.anchoranalysis.spatial.orientation |
Various methods to specify the orientation (general direction) of an entity.
|
org.anchoranalysis.spatial.point |
A cartesian-coordinate, across varying primitive types, in 2D and 3D space.
|
org.anchoranalysis.spatial.point.consumer |
Functional interfaces that accept cartesian coordinate points specified in different ways.
|
org.anchoranalysis.spatial.rtree |
R-Tree data structure and related operations.
|
org.anchoranalysis.spatial.scale |
How to much to scale an entity in Cartesian space by.
|
org.anchoranalysis.test.feature.plugins.objects |
Fixtures for creating object-masks and related feature-inputs.
|
org.anchoranalysis.test.image |
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
|
org.anchoranalysis.test.image.object |
Fixtures for creating object-masks.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Tuple3d
A three-dimensional tuple of double values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point2i
A two-dimensional point of int values.
|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3f
A three-dimensional point of float values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3f
A three-dimensional point of float values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point2d
A two-dimensional point of double values.
|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point2d
A two-dimensional point of double values.
|
Point2i
A two-dimensional point of int values.
|
Point3d
A three-dimensional point of double values.
|
Point3f
A three-dimensional point of float values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Tuple3i
A three-dimensional tuple of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Vector3d
A three-dimensional vector of double values.
|
Class and Description |
---|
Contour
A path of successively-neighbored points.
|
Class and Description |
---|
Point2d
A two-dimensional point of double values.
|
Point3d
A three-dimensional point of double values.
|
Point3f
A three-dimensional point of float values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point2i
A two-dimensional point of int values.
|
Class and Description |
---|
Point2i
A two-dimensional point of int values.
|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Tuple3i
A three-dimensional tuple of int values.
|
Class and Description |
---|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Tuple3d
A three-dimensional tuple of double values.
|
Vector3d
A three-dimensional vector of double values.
|
Class and Description |
---|
Point2d
A two-dimensional point of double values.
|
Point2f
A two-dimensional point of float values.
|
Point2i
A two-dimensional point of int values.
|
Point3d
A three-dimensional point of double values.
|
Point3f
A three-dimensional point of float values.
|
Point3i
A three-dimensional point of int values.
|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Tuple3d
A three-dimensional tuple of double values.
|
Tuple3f
A three-dimensional tuple of float values.
|
Tuple3i
A three-dimensional tuple of int values.
|
Vector3d
A three-dimensional vector of double values.
|
Class and Description |
---|
Point2i
A two-dimensional point of int values.
|
Class and Description |
---|
ReadableTuple3i
A tuple with three-values, respectively for the X, Y and Z dimensions.
|
Class and Description |
---|
Point2i
A two-dimensional point of int values.
|
Point3d
A three-dimensional point of double values.
|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point2i
A two-dimensional point of int values.
|
Class and Description |
---|
Point3i
A three-dimensional point of int values.
|
Class and Description |
---|
Point2d
A two-dimensional point of double values.
|
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.