Package | Description |
---|---|
org.anchoranalysis.bean.shared.dictionary |
Setting, referencing and initializing key-value parameters.
|
org.anchoranalysis.bean.shared.path |
Defines a root path directory on the filesystem whre files are read / written.
|
org.anchoranalysis.feature.initialization |
Initialization parameters used for beans in
org.anchoranalysis.feature.bean . |
org.anchoranalysis.image.bean.nonbean.init |
Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
|
org.anchoranalysis.image.feature.bean.evaluator |
Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
|
org.anchoranalysis.image.feature.calculator |
Implementations of
FeatureCalculatorMulti
related to images, especially to create tables of feature-calculations. |
org.anchoranalysis.mpp.init |
Parameters used to initialize certain types of beans.
|
org.anchoranalysis.mpp.io.input |
Non-beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.segment.bean |
Beans for segmentation algorithms related to marked-point-processes.
|
org.anchoranalysis.mpp.segment.bean.define |
DefineOutputter and its sub-classes. |
org.anchoranalysis.plugin.mpp.bean.define | |
org.anchoranalysis.plugin.mpp.experiment.objects |
Non-bean classes used in
org.anchoranalysis.plugin.mpp.experiment.bean.objects . |
org.anchoranalysis.plugin.mpp.segment.bean.marks |
Beans to perform segmentation involving
Mark s and related
classes. |
org.anchoranalysis.test.feature.plugins |
Testing utilities and fixtures with no greater downstream dependency than
anchor-image-feature or anchor-mpp.
|
Constructor and Description |
---|
DictionaryInitialization(SharedObjects sharedObjects)
Creates using a
SharedObjects to create a NamedProviderStore for the
dictionaries. |
Constructor and Description |
---|
FilePathInitialization(SharedObjects sharedObjects)
Creates using a
SharedObjects to create a NamedProviderStore for the
file-paths. |
Modifier and Type | Method and Description |
---|---|
SharedObjects |
FeatureInitialization.sharedObjectsRequired()
Retrieves the shared-objects associated with the initialization, or throws an an exception if
they do not exist.
|
Modifier and Type | Method and Description |
---|---|
Optional<SharedObjects> |
FeatureInitialization.getSharedObjects()
Shared-objects, which can be referenced by the feature to influence calculation.
|
Modifier and Type | Method and Description |
---|---|
static FeatureRelatedInitialization |
FeatureRelatedInitialization.create(SharedObjects sharedObjects)
Creates with shared-objects, and otherwise empty initialization.
|
Constructor and Description |
---|
FeatureInitialization(SharedObjects sharedObjects)
Create only with shared-objects.
|
Constructor and Description |
---|
FeatureInitialization(Optional<Dictionary> dictionary,
Optional<EnergyStackWithoutParameters> energyStack,
Optional<SharedObjects> sharedObjects) |
Modifier and Type | Method and Description |
---|---|
SharedObjects |
ImageInitialization.sharedObjects()
Objects shared between different components, a form of shared memory between them.
|
Modifier and Type | Method and Description |
---|---|
void |
ImageInitialization.addSharedObjectsDictionary(Optional<SharedObjects> sharedObjects,
Optional<Dictionary> dictionary)
Adds stacks and object-collections from a
SharedObjects using the respective
identifiers, and also adds a Dictionary . |
Constructor and Description |
---|
ImageInitialization(SharedObjects sharedObjects)
Create with shared-objects.
|
ImageInitialization(SharedObjects sharedObjects,
Optional<ImageSizeSuggestion> suggestedSize)
Create with shared-objects and a resizing suggestion.
|
Modifier and Type | Method and Description |
---|---|
NamedFeatureCalculatorMulti<T> |
FeatureListEvaluator.createFeatureSession(java.util.function.UnaryOperator<FeatureList<T>> addFeatures,
SharedObjects sharedObjects)
Creates session for evaluating
features . |
Modifier and Type | Method and Description |
---|---|
static FeatureInitialization |
InitializationFactory.create(Optional<SharedObjects> sharedObjects,
Optional<EnergyStack> energyStack) |
Modifier and Type | Method and Description |
---|---|
static PointsInitialization |
PointsInitialization.create(ImageInitialization image,
SharedObjects so) |
Modifier and Type | Method and Description |
---|---|
void |
MultiInput.copyTo(SharedObjects target,
Logger logger) |
void |
ExportSharedObjects.copyTo(SharedObjects target,
Logger logger)
Adds any exported shared-objects to
sharedObjects . |
Modifier and Type | Method and Description |
---|---|
static MarksInitialization |
MarksInitializationFactory.createFromExisting(InitializationContext context,
Optional<Define> define,
Optional<SharedObjects> sharedObjects,
Optional<Dictionary> dictionary) |
Modifier and Type | Method and Description |
---|---|
abstract MarkCollection |
SegmentIntoMarks.segment(SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
InputOutputContext context) |
Modifier and Type | Method and Description |
---|---|
protected void |
DefineOutputter.outputSharedObjects(SharedObjects sharedObjects,
Optional<EnergyStack> energyStack,
Outputter outputter) |
Modifier and Type | Method and Description |
---|---|
protected ImageInitialization |
DefineOutputter.createInitialization(InitializationContext context,
Optional<SharedObjects> sharedObjects,
Optional<Dictionary> dictionary) |
Modifier and Type | Method and Description |
---|---|
<S> S |
DefineOutputterWithEnergy.processInput(InitializationContext context,
SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
DefineOutputterWithEnergy.ProcessWithEnergyStack<ImageInitialization,S> operation) |
Modifier and Type | Method and Description |
---|---|
void |
FromCSVInput.copyTo(SharedObjects target,
Logger logger) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
SegmentWithMarkedPointProcess.segment(SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
InputOutputContext context) |
Modifier and Type | Method and Description |
---|---|
static <T extends FeatureInput> |
FeatureTestCalculator.assertDoubleResult(String message,
Feature<T> feature,
T input,
Optional<SharedObjects> sharedObjects,
double expectedResult) |
static <T extends FeatureInput> |
FeatureTestCalculator.assertIntResult(String message,
Feature<T> feature,
T input,
Optional<SharedObjects> sharedObjects,
int expectedResult) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.