Package | Description |
---|---|
org.anchoranalysis.bean.shared.dictionary |
Setting, referencing and initializing key-value parameters.
|
org.anchoranalysis.core.value |
Encapsulating values or sets of named-values.
|
org.anchoranalysis.feature.energy |
A particular stack used in feature-calculations called a
EnergyStack together with related classes. |
org.anchoranalysis.feature.initialization |
Initialization parameters used for beans in
org.anchoranalysis.feature.bean . |
org.anchoranalysis.feature.input |
Base classes providing inputs to feature calculations.
|
org.anchoranalysis.image.bean.nonbean.init |
Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
|
org.anchoranalysis.image.feature.bean |
Beans pertaining to feature definition and calculation.
|
org.anchoranalysis.io.generator.serialized |
Generators for writing serialized objects.
|
org.anchoranalysis.io.input.bean.dictionary |
Methods to provide a
Dictionary . |
org.anchoranalysis.mpp.feature.bean.mark |
Features calculated on a
Mark . |
org.anchoranalysis.mpp.feature.energy.scheme |
Factorized form of storing the energy during an energy-minimization optimization scheme.
|
org.anchoranalysis.mpp.io.input |
Non-beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.segment.bean |
Beans for segmentation algorithms related to marked-point-processes.
|
org.anchoranalysis.mpp.segment.bean.define |
DefineOutputter and its sub-classes. |
org.anchoranalysis.plugin.image.feature.bean.score |
Implementations of
VoxelScore . |
org.anchoranalysis.plugin.mpp.bean.define | |
org.anchoranalysis.plugin.mpp.segment.bean.marks |
Beans to perform segmentation involving
Mark s and related
classes. |
Modifier and Type | Method and Description |
---|---|
Dictionary |
DictionaryProviderReference.get() |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<Dictionary> |
DictionaryInitialization.getDictionaries()
Named-store of
Dictionary objects. |
Modifier and Type | Method and Description |
---|---|
Dictionary |
Dictionary.duplicate()
Deep-copy of existing dictionary.
|
static Dictionary |
Dictionary.readFromFile(Path path)
Reads parameters from a Java
properties file.
|
Modifier and Type | Method and Description |
---|---|
void |
Dictionary.putCheck(Dictionary dictionary)
Inserts all key/value pairs from another dictionary, checking that no key already exists.
|
Modifier and Type | Method and Description |
---|---|
Dictionary |
EnergyStack.getParameters()
The associated parameters.
|
Modifier and Type | Method and Description |
---|---|
EnergyStack |
EnergyStack.copyChangeDictionary(Dictionary dictionaryToAssign)
Makes a copy of the
EnergyStack but assigns a new Dictionary . |
void |
EnergyStack.setParameters(Dictionary parameters)
The associated parameters.
|
Constructor and Description |
---|
EnergyStack(EnergyStackWithoutParameters delegate,
Dictionary parameters) |
EnergyStack(Stack stack,
Dictionary dictionary)
Create from a
Stack with associated parameters in a Dictionary . |
Modifier and Type | Method and Description |
---|---|
Optional<Dictionary> |
FeatureInitialization.getDictionary()
A dictionary of key-value pairs.
|
Constructor and Description |
---|
FeatureInitialization(Dictionary dictionary)
Create only with a dictionary.
|
Constructor and Description |
---|
FeatureInitialization(Optional<Dictionary> dictionary,
Optional<EnergyStackWithoutParameters> energyStack,
Optional<SharedObjects> sharedObjects) |
Modifier and Type | Method and Description |
---|---|
default Dictionary |
FeatureInputDictionary.getDictionaryRequired()
The associated dictionary, or an exception if it doesn't exist.
|
Modifier and Type | Method and Description |
---|---|
Optional<Dictionary> |
FeatureInputDictionary.getDictionaryOptional()
The associated dictionary, if it exists.
|
Optional<Dictionary> |
FeatureInputEnergy.getDictionaryOptional() |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<Dictionary> |
ImageInitialization.dictionaries()
Named-store of
Dictionary s. |
Modifier and Type | Method and Description |
---|---|
void |
ImageInitialization.addDictionary(String identifier,
Dictionary toAdd)
Adds a
Dictionary to the corresponding named-collection of dictionaries. |
Modifier and Type | Method and Description |
---|---|
void |
ImageInitialization.addSharedObjectsDictionary(Optional<SharedObjects> sharedObjects,
Optional<Dictionary> dictionary)
Adds stacks and object-collections from a
SharedObjects using the respective
identifiers, and also adds a Dictionary . |
Modifier and Type | Method and Description |
---|---|
void |
VoxelScore.initialize(List<Histogram> histograms,
Optional<Dictionary> dictionary)
Initializes the voxels-score.
|
Modifier and Type | Method and Description |
---|---|
void |
DictionaryGenerator.writeToFile(Dictionary element,
OutputWriteSettings settings,
Path filePath) |
Modifier and Type | Method and Description |
---|---|
Dictionary |
ReadFromFile.get() |
Modifier and Type | Method and Description |
---|---|
Optional<Dictionary> |
FeatureInputMark.getDictionaryOptional() |
Constructor and Description |
---|
FeatureInputMark(Mark mark,
Dimensions dimensions,
Dictionary dictionary) |
Constructor and Description |
---|
FeatureInputMark(Mark mark,
Optional<Dimensions> dimensions,
Optional<Dictionary> dictionary) |
Modifier and Type | Method and Description |
---|---|
Dictionary |
DictionaryForImageCreator.create(EnergyStackWithoutParameters energyStack) |
Dictionary |
EnergyScheme.createDictionary()
returns the associated
Dictionary or an empty set, if no dictionary is associated with the energy-scheme. |
Modifier and Type | Method and Description |
---|---|
MultiInputSubMap<Dictionary> |
MultiInput.dictionary() |
Modifier and Type | Method and Description |
---|---|
static MarksInitialization |
MarksInitializationFactory.createFromExisting(InitializationContext context,
Optional<Define> define,
Optional<SharedObjects> sharedObjects,
Optional<Dictionary> dictionary) |
Modifier and Type | Method and Description |
---|---|
abstract MarkCollection |
SegmentIntoMarks.segment(SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
InputOutputContext context) |
Modifier and Type | Method and Description |
---|---|
protected ImageInitialization |
DefineOutputter.createInitialization(InitializationContext context,
Optional<SharedObjects> sharedObjects,
Optional<Dictionary> dictionary) |
Modifier and Type | Method and Description |
---|---|
protected static double |
FromDictionaryBase.extractAsDouble(Dictionary dictionary,
String key) |
protected abstract void |
FromDictionaryBase.setupDictionary(Dictionary dictionary) |
Modifier and Type | Method and Description |
---|---|
void |
NormalizeByMax.initialize(List<Histogram> histograms,
Optional<Dictionary> dictionary) |
void |
CalculateLevelBase.initialize(List<Histogram> histograms,
Optional<Dictionary> dictionary) |
void |
FromDictionaryBase.initialize(List<Histogram> histograms,
Optional<Dictionary> dictionary) |
void |
IdentityImposeValueRelationToHistogram.initialize(List<Histogram> histograms,
Optional<Dictionary> dictionary) |
Modifier and Type | Method and Description |
---|---|
<S> S |
DefineOutputterWithEnergy.processInput(InitializationContext context,
SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
DefineOutputterWithEnergy.ProcessWithEnergyStack<ImageInitialization,S> operation) |
Modifier and Type | Method and Description |
---|---|
MarkCollection |
SegmentWithMarkedPointProcess.segment(SharedObjects sharedObjects,
Optional<Dictionary> dictionary,
InputOutputContext context) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.