Uses of Class
org.anchoranalysis.image.bean.provider.stack.StackProvider

Packages that use StackProvider

Package	Description
org.anchoranalysis.image.bean.provider.stack	A provider of Stacks.
org.anchoranalysis.image.io.bean.stack.combine	Beans to combine multiple stacks into a single stack before outputting.
org.anchoranalysis.image.io.stack.input	Non-bean classes for reading a Stack from the filesystem.
org.anchoranalysis.plugin.image.bean.stack.provider	Implementations of StackProvider.
org.anchoranalysis.plugin.image.bean.stack.provider.color	Implementations of StackProvider that color portions of an image.
org.anchoranalysis.plugin.image.task.bean.feature.source	Source of rows in feature-tables with FeatureSource and derived classes.
org.anchoranalysis.plugin.image.task.bean.labeller	Associating labels with images.
org.anchoranalysis.plugin.image.task.bean.slice	Tasks that process on one or more slices from a z-stack.
org.anchoranalysis.plugin.image.task.feature.calculator	Non-beans for calculating Features.
org.anchoranalysis.plugin.imagej.bean.stack.provider	Implementations of StackProvider that call ImageJ.
org.anchoranalysis.plugin.mpp.bean.define	Beans related to Define involving Mark or related classes.
org.anchoranalysis.plugin.mpp.bean.stack.provider	Implementations of StackProvider involving Mark or related classes.
org.anchoranalysis.plugin.opencv.bean.color	Operations involving color-spaces and OpenCV.

Uses of StackProvider in org.anchoranalysis.image.bean.provider.stack

Subclasses of StackProvider in org.anchoranalysis.image.bean.provider.stack

Modifier and Type	Class	Description
class	Arrange	Creates a stack that combines other stacks.
class	StackProviderUnary	Implementation of StackProvider that calls a single delegate Provider<Stack>.

Uses of StackProvider in org.anchoranalysis.image.io.bean.stack.combine

Subclasses of StackProvider in org.anchoranalysis.image.io.bean.stack.combine

Modifier and Type	Class	Description
class	TileWithLabels	Tiles a number of StackProviderWithLabels as a single StackProvider.
class	WriteText	Creates an image that contains text only.

Uses of StackProvider in org.anchoranalysis.image.io.stack.input

Methods in org.anchoranalysis.image.io.stack.input that return StackProvider

Modifier and Type	Method	Description
static StackProvider	TileStackProviders.tile(List<StackProviderWithLabel> providers, int numberColumns, boolean createShort, boolean expandLabelZ)	Creates a StackProvider that provides a tiled-representation of providers.

Uses of StackProvider in org.anchoranalysis.plugin.image.bean.stack.provider

Subclasses of StackProvider in org.anchoranalysis.plugin.image.bean.stack.provider

Modifier and Type	Class	Description
class	Concatenate	Combines all the channels from one or more sources (stacks, channels etc.)
class	FromChannelOrMask	Creates a Stack from a Channel or Mask (reusing the voxel buffers).
class	FromInput	Finds the input-stack using a conventional name of input_image
class	Reference	Retrieves an existing stack.

Uses of StackProvider in org.anchoranalysis.plugin.image.bean.stack.provider.color

Subclasses of StackProvider in org.anchoranalysis.plugin.image.bean.stack.provider.color

Modifier and Type	Class	Description
class	ColoredBase	Base class for providers that draw entities (an outline or filled) on a background.
class	ColoredBaseWithGenerator	Like ColoredBase but uses a generator to determine the colors for the objects.
class	ColoredMask	Draws a colored representation (outline or filled) of a ObjectMask on a background
class	ColoredObjects	Draws a colored representation (outline or filled) of an ObjectCollection on a background
class	ThreeChannels	Provides a Stack by combining up to three channels (red, green, blue) into an RGB image.
class	ThreeColoredObjects	Colors three collections of objects in RED, GREEN, BLUE channels on top of a background.

Uses of StackProvider in org.anchoranalysis.plugin.image.task.bean.feature.source

Methods in org.anchoranalysis.plugin.image.task.bean.feature.source that return StackProvider

Modifier and Type	Method	Description
StackProvider	FromImage.getStackEnergy()	Optionally defines an energy-stack for feature calculation (if not set, the energy-stack is considered to be the input stacks).

Methods in org.anchoranalysis.plugin.image.task.bean.feature.source with parameters of type StackProvider

Modifier and Type	Method	Description
void	FromImage.setStackEnergy(StackProvider stackEnergy)	Optionally defines an energy-stack for feature calculation (if not set, the energy-stack is considered to be the input stacks).

Uses of StackProvider in org.anchoranalysis.plugin.image.task.bean.labeller

Methods in org.anchoranalysis.plugin.image.task.bean.labeller that return StackProvider

Modifier and Type	Method	Description
StackProvider	ImageAssignLabel.getOutputStackProvider()	If it's set, a stack is generated that is outputted into subdirectory corresponding to the groupIdentifier.
StackProvider	BinaryClassifierImageLabeller.getStackEnergy()	Provider for the energy stack.

Methods in org.anchoranalysis.plugin.image.task.bean.labeller with parameters of type StackProvider

Modifier and Type	Method	Description
void	ImageAssignLabel.setOutputStackProvider(StackProvider outputStackProvider)	If it's set, a stack is generated that is outputted into subdirectory corresponding to the groupIdentifier.
void	BinaryClassifierImageLabeller.setStackEnergy(StackProvider stackEnergy)	Provider for the energy stack.

Uses of StackProvider in org.anchoranalysis.plugin.image.task.bean.slice

Methods in org.anchoranalysis.plugin.image.task.bean.slice that return StackProvider

Modifier and Type	Method	Description
StackProvider	ExtractSlice.getStackEnergy()

Methods in org.anchoranalysis.plugin.image.task.bean.slice with parameters of type StackProvider

Modifier and Type	Method	Description
void	ExtractSlice.setStackEnergy(StackProvider stackEnergy)

Uses of StackProvider in org.anchoranalysis.plugin.image.task.feature.calculator

Methods in org.anchoranalysis.plugin.image.task.feature.calculator with parameters of type StackProvider

Modifier and Type	Method	Description
static EnergyStack	FeatureCalculatorRepeated.extractStack(ProvidesStackInput input, StackProvider stackEnergy, InputOutputContext context)	Extracts an EnergyStack from the given input and stack provider.

Constructor parameters in org.anchoranalysis.plugin.image.task.feature.calculator with type arguments of type StackProvider

Modifier	Constructor	Description
	FeatureCalculatorFromProvider(ProvidesStackInput stackInput, Optional<StackProvider> stackEnergy, InputOutputContext context)	Creates a new FeatureCalculatorFromProvider.

Uses of StackProvider in org.anchoranalysis.plugin.imagej.bean.stack.provider

Subclasses of StackProvider in org.anchoranalysis.plugin.imagej.bean.stack.provider

Modifier and Type	Class	Description
class	MontageSlices	Creates a montage of slices from a stack.

Uses of StackProvider in org.anchoranalysis.plugin.mpp.bean.define

Methods in org.anchoranalysis.plugin.mpp.bean.define that return StackProvider

Modifier and Type	Method	Description
StackProvider	DefineOutputterWithEnergy.getStackEnergy()	The stack provider for the energy stack.

Methods in org.anchoranalysis.plugin.mpp.bean.define with parameters of type StackProvider

Modifier and Type	Method	Description
void	DefineOutputterWithEnergy.setStackEnergy(StackProvider stackEnergy)	The stack provider for the energy stack.

Uses of StackProvider in org.anchoranalysis.plugin.mpp.bean.stack.provider

Subclasses of StackProvider in org.anchoranalysis.plugin.mpp.bean.stack.provider

Modifier and Type	Class	Description
class	ColoredMarks	Draws a colored representation (outline or filled) of an MarkCollection on a background

Uses of StackProvider in org.anchoranalysis.plugin.opencv.bean.color

Subclasses of StackProvider in org.anchoranalysis.plugin.opencv.bean.color

Modifier and Type	Class	Description
class	ColorConverterBase	Converts a RGB stack into another color space using OpenCV.
class	ConvertRGBToHSV	Converts a RGB image to the HSV color space.
class	ConvertRGBToLab	Converts a RGB image to the Lab color space.