Modifier and Type | Class and Description |
---|---|
class |
Arrange
Creates a stack that combines other stacks.
|
class |
StackProviderUnary
Implementation of
StackProvider that calls a single delegate Provider<Stack> . |
Modifier and Type | Class and Description |
---|---|
class |
TileWithLabels
Tiles a number of
StackProviderWithLabel s as a single StackProvider . |
class |
WriteText
Creates an image that contains text only.
|
Modifier and Type | Method and Description |
---|---|
static StackProvider |
TileStackProviders.tile(List<StackProviderWithLabel> providers,
int numberColumns,
boolean createShort,
boolean expandLabelZ)
Creates a
StackProvider that provides a tiled-representation of providers . |
Modifier and Type | Class and Description |
---|---|
class |
Concatenate
Combines all the channels from one or more sources (stacks, channels etc.)
|
class |
FromChannelOrMask
Creates a stack from a channel or mask (reusing the voxel buffers)
|
class |
FromInput
Finds the input-stack using a conventional name of
input_image |
class |
Reference
Retrieves an existing stack.
|
Modifier and Type | Class and Description |
---|---|
class |
ColoredBase
Base class for providers that draw entities (an outline or filled) on a background
|
class |
ColoredBaseWithGenerator
Like
ColoredBase but uses a generator to determine the colors for the objects |
class |
ColoredMask
Draws a colored representation (outline or filled) of a
ObjectMask on a background |
class |
ColoredObjects
Draws a colored representation (outline or filled) of an
ObjectCollection on a background |
class |
ThreeChannels |
class |
ThreeColoredObjects
Colors three collections of objects in RED, GREEN, BLUE channels on top of a background.
|
Modifier and Type | Method and Description |
---|---|
StackProvider |
FromImage.getStackEnergy()
Optionally defines a energy-stack for feature calculation (if not set, the energy-stack is
considered to be the input stacks).
|
Modifier and Type | Method and Description |
---|---|
void |
FromImage.setStackEnergy(StackProvider stackEnergy)
Optionally defines a energy-stack for feature calculation (if not set, the energy-stack is
considered to be the input stacks).
|
Modifier and Type | Method and Description |
---|---|
StackProvider |
ImageAssignLabel.getOutputStackProvider()
If it's set, a stack is generated that is outputted into subdirectory corresponding to the
groupIdentifier.
|
StackProvider |
BinaryClassifierImageLabeller.getStackEnergy() |
Modifier and Type | Method and Description |
---|---|
void |
ImageAssignLabel.setOutputStackProvider(StackProvider outputStackProvider)
If it's set, a stack is generated that is outputted into subdirectory corresponding to the
groupIdentifier.
|
void |
BinaryClassifierImageLabeller.setStackEnergy(StackProvider stackEnergy) |
Modifier and Type | Method and Description |
---|---|
StackProvider |
ExtractSlice.getStackEnergy() |
Modifier and Type | Method and Description |
---|---|
void |
ExtractSlice.setStackEnergy(StackProvider stackEnergy) |
Modifier and Type | Method and Description |
---|---|
static EnergyStack |
FeatureCalculatorRepeated.extractStack(ProvidesStackInput input,
StackProvider stackEnergy,
InputOutputContext context) |
Constructor and Description |
---|
FeatureCalculatorFromProvider(ProvidesStackInput stackInput,
Optional<StackProvider> stackEnergy,
InputOutputContext context) |
Modifier and Type | Class and Description |
---|---|
class |
MontageSlices |
Modifier and Type | Method and Description |
---|---|
StackProvider |
DefineOutputterWithEnergy.getStackEnergy() |
Modifier and Type | Method and Description |
---|---|
void |
DefineOutputterWithEnergy.setStackEnergy(StackProvider stackEnergy) |
Modifier and Type | Class and Description |
---|---|
class |
ColoredMarks
Draws a colored representation (outline or filled) of an
MarkCollection on a background |
Modifier and Type | Method and Description |
---|---|
StackProvider |
ExportObjectsFromCSV.getStack()
The stack that is the background for our objects
|
Modifier and Type | Method and Description |
---|---|
List<NamedBean<StackProvider>> |
ExportObjectsAsCroppedImages.getListStackProvider()
The channels we extract the object-masks from - all assumed to be of same dimension
|
List<NamedBean<StackProvider>> |
ExportObjectsAsCroppedImages.getListStackProviderMIP()
The channels we extract the object-masks from - all assumed to be of same dimension
|
Modifier and Type | Method and Description |
---|---|
void |
ExportObjectsFromCSV.setStack(StackProvider stack)
The stack that is the background for our objects
|
Modifier and Type | Method and Description |
---|---|
void |
ExportObjectsAsCroppedImages.setListStackProvider(List<NamedBean<StackProvider>> listStackProvider)
The channels we extract the object-masks from - all assumed to be of same dimension
|
void |
ExportObjectsAsCroppedImages.setListStackProviderMIP(List<NamedBean<StackProvider>> listStackProviderMIP)
The channels we extract the object-masks from - all assumed to be of same dimension
|
Modifier and Type | Class and Description |
---|---|
class |
ColorConverterBase
Converts a RGB stack into another color space using OpenCV.
|
class |
ConvertRGBToHSV
Converts a RGB image to the HSV color
space.
|
class |
ConvertRGBToLab
Converts a RGB image to the Lab color
space.
|
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.