Uses of Class
org.anchoranalysis.image.voxel.binary.values.BinaryValuesByte

Packages that use BinaryValuesByte

Package	Description
org.anchoranalysis.image.bean.threshold	Base classes for thresholding and calculating levels for thresholding.
org.anchoranalysis.image.core.mask	An image with only two permissible states.
org.anchoranalysis.image.core.mask.combine	Binary operations involving voxelwise combination of Mask.
org.anchoranalysis.image.voxel.binary.values	Defining on and off intensity-values to interpret an image in a binary way.
org.anchoranalysis.image.voxel.kernel	Applying a kernel via convolution to voxels.
org.anchoranalysis.image.voxel.object	The fundamental data class that is an ObjectMask and related structures.
org.anchoranalysis.image.voxel.thresholder	Thresholding operations on voxels.
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.overlay	Any Overlay related to a Mark.
org.anchoranalysis.overlay	Overlays and related classes involving drawing entities on top of an image.
org.anchoranalysis.overlay.object	An implementation of an Overlay that draws an ObjectMask on an image.
org.anchoranalysis.plugin.fiji.bean.threshold	Implementations of Thresholder that use FIJI.
org.anchoranalysis.plugin.image.segment.thresholder.slice	Non-beans pertaining to segmenting a z-stack slice-by-slice.
org.anchoranalysis.plugin.imagej.bean.threshold	Implementations of Thresholder that call ImageJ.

Uses of BinaryValuesByte in org.anchoranalysis.image.bean.threshold

Methods in org.anchoranalysis.image.bean.threshold with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
BinaryVoxels<UnsignedByteBuffer>	Thresholder.threshold(VoxelsUntyped voxels, BinaryValuesByte binaryValues)	Like Thresholder.threshold(VoxelsUntyped, BinaryValuesByte, Optional, Optional) applying the thresholding to the entire set of voxels.
abstract BinaryVoxels<UnsignedByteBuffer>	Thresholder.threshold(VoxelsUntyped voxels, BinaryValuesByte binaryValues, Optional<Histogram> histogram, Optional<ObjectMask> objectMask)	Thresholds voxels (across a range of values) so that they have only binary range (i.e. two voxel values representing on and off).
BinaryVoxels<UnsignedByteBuffer>	ThresholderGlobal.threshold(VoxelsUntyped inputBuffer, BinaryValuesByte bvOut, Optional<Histogram> histogram, Optional<ObjectMask> objectMask)

Uses of BinaryValuesByte in org.anchoranalysis.image.core.mask

Methods in org.anchoranalysis.image.core.mask that return BinaryValuesByte

Modifier and Type	Method	Description
BinaryValuesByte	Mask.binaryValuesByte()	The two states which are permitted to be assigned to the voxels, stored as bytes.

Uses of BinaryValuesByte in org.anchoranalysis.image.core.mask.combine

Methods in org.anchoranalysis.image.core.mask.combine with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
static void	MaskAnd.apply(Voxels<UnsignedByteBuffer> voxelsFirst, Voxels<UnsignedByteBuffer> voxelsSecond, BinaryValuesByte binaryValuesFirst, BinaryValuesByte binaryValuesSecond)	Performs a logical and operation on each voxel in two Voxels (considered to be masks), writing the result onto the second mask.

Uses of BinaryValuesByte in org.anchoranalysis.image.voxel.binary.values

Methods in org.anchoranalysis.image.voxel.binary.values that return BinaryValuesByte

Modifier and Type	Method	Description
BinaryValuesByte	BinaryValuesInt.asByte()	Derives a BinaryValuesByte representation from the current values.
static BinaryValuesByte	BinaryValuesByte.getDefault()	Default values to use, if not otherwise specified.
BinaryValuesByte	BinaryValuesByte.invert()	Inverts the values so off becomes on, and vice-versa.

Uses of BinaryValuesByte in org.anchoranalysis.image.voxel.kernel

Constructors in org.anchoranalysis.image.voxel.kernel with parameters of type BinaryValuesByte

Modifier	Constructor	Description
	KernelPointCursor(int index, Point3i point, Extent extent, BinaryValuesByte binaryValues, KernelApplicationParameters parameters)	Creates to be focused around a particular point in the image.

Uses of BinaryValuesByte in org.anchoranalysis.image.voxel.object

Methods in org.anchoranalysis.image.voxel.object that return BinaryValuesByte

Modifier and Type	Method	Description
BinaryValuesByte	ObjectMask.binaryValuesByte()	What values constitute an on and off state in voxels - as bytes.
BinaryValuesByte	ObjectCollection.getFirstBinaryValuesByte()	The BinaryValuesByte associated with the first object in the collection.

Constructors in org.anchoranalysis.image.voxel.object with parameters of type BinaryValuesByte

Modifier	Constructor	Description
	ObjectMask(BoundingBox box, Voxels<UnsignedByteBuffer> voxels, BinaryValuesByte binaryValues)	Like ObjectMask(BoundingBox, Voxels, BinaryValuesInt) but specifies the binary-values as bytes.

Uses of BinaryValuesByte in org.anchoranalysis.image.voxel.thresholder

Methods in org.anchoranalysis.image.voxel.thresholder with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
static BinaryVoxels<UnsignedByteBuffer>	VoxelsThresholder.threshold(VoxelsUntyped voxels, float level, BinaryValuesByte binaryValues, Optional<ObjectMask> objectMask, boolean alwaysDuplicate)	Applies thresholding to VoxelsUntyped.
static void	VoxelsThresholder.thresholdByte(Voxels<UnsignedByteBuffer> voxels, int level, BinaryValuesByte binaryValues)	Applies thresholding to Voxels of unsigned byte data type.
static BinaryVoxels<UnsignedByteBuffer>	VoxelsThresholder.thresholdFloat(Voxels<FloatBuffer> voxels, float level, BinaryValuesByte binaryValues)	Applies thresholding to Voxels of float data type.

Uses of BinaryValuesByte in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
ObjectMask	Mark.deriveObject(Dimensions dimensions, RegionMembershipWithFlags region, BinaryValuesByte binaryValues)	Creates an ObjectMask representation of the mark.

Constructors in org.anchoranalysis.mpp.mark with parameters of type BinaryValuesByte

Modifier	Constructor	Description
	MarkToObjectConverter(Optional<ScaleFactor> scaleFactor, Dimensions dimensions, RegionMembershipWithFlags regionMembership, BinaryValuesByte binaryValuesOut)	Creates a new MarkToObjectConverter instance.

Uses of BinaryValuesByte in org.anchoranalysis.mpp.overlay

Methods in org.anchoranalysis.mpp.overlay with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
ObjectWithProperties	OverlayMark.createObject(Dimensions dimensionsEntireImage, BinaryValuesByte binaryValuesOut)

Uses of BinaryValuesByte in org.anchoranalysis.overlay

Methods in org.anchoranalysis.overlay with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
abstract ObjectWithProperties	Overlay.createObject(Dimensions dimensionsEntireImage, BinaryValuesByte binaryValuesOut)	Derives an object-mask representation of the overlay to be drawn with overlayWriter.

Uses of BinaryValuesByte in org.anchoranalysis.overlay.object

Methods in org.anchoranalysis.overlay.object with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
ObjectWithProperties	OverlayObjectMask.createObject(Dimensions dimensionsEntireImage, BinaryValuesByte binaryValuesOut)

Uses of BinaryValuesByte in org.anchoranalysis.plugin.fiji.bean.threshold

Methods in org.anchoranalysis.plugin.fiji.bean.threshold with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
BinaryVoxels<UnsignedByteBuffer>	ThresholderAutoIJ.threshold(VoxelsUntyped inputBuffer, BinaryValuesByte binaryValues, Optional<Histogram> histogram, Optional<ObjectMask> objectMask)

Uses of BinaryValuesByte in org.anchoranalysis.plugin.image.segment.thresholder.slice

Constructors in org.anchoranalysis.plugin.image.segment.thresholder.slice with parameters of type BinaryValuesByte

Modifier	Constructor	Description
	SliceThresholder(BinaryValuesByte binaryValuesByte)	Creates a new SliceThresholder instance.
	SliceThresholderMask(boolean clearOutsideMask, ObjectMask object, BinaryValuesByte binaryValues)	Creates a new SliceThresholderMask.
	SliceThresholderWithoutMask(BinaryValuesByte binaryValues)	Creates a new SliceThresholderWithoutMask.

Uses of BinaryValuesByte in org.anchoranalysis.plugin.imagej.bean.threshold

Methods in org.anchoranalysis.plugin.imagej.bean.threshold with parameters of type BinaryValuesByte

Modifier and Type	Method	Description
BinaryVoxels<UnsignedByteBuffer>	ThresholderSimpleFillHoles2D.threshold(VoxelsUntyped inputBuffer, BinaryValuesByte binaryValues, Optional<Histogram> histogram, Optional<ObjectMask> objectMask)