Package | Description |
---|---|
org.anchoranalysis.image.bean.displayer | |
org.anchoranalysis.image.bean.segment.binary |
Base classes to perform binary-segmentation.
|
org.anchoranalysis.image.bean.threshold |
Base classes for thresholding and calculating levels for thresholding.
|
org.anchoranalysis.image.core.bufferedimage |
Conversions and operations involving Java AWT's
BufferedImage . |
org.anchoranalysis.image.core.channel.convert |
Converts a channel to other data-types.
|
org.anchoranalysis.image.core.channel.convert.attached.channel |
Converts a channel to another data-type based upon a
Channel to which it is attached. |
org.anchoranalysis.image.core.channel.convert.attached.histogram |
Converts a channel to another data-type based upon a
Histogram to which it is attached. |
org.anchoranalysis.image.core.mask |
An image with only two permissible states.
|
org.anchoranalysis.image.core.mask.combine |
Binary operations involving voxelwise combination of
Mask . |
org.anchoranalysis.image.core.object.properties |
An
ObjectCollection with associated key-value
pairs. |
org.anchoranalysis.image.core.stack |
Defines the key data object,
Stack , and related
classes. |
org.anchoranalysis.image.inference.segment |
Non-beans pertaining to segmentation of images via model inference.
|
org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
org.anchoranalysis.image.voxel.arithmetic |
Arithmetic operations for
Voxels . |
org.anchoranalysis.image.voxel.assigner |
Assigns values to some or all voxels.
|
org.anchoranalysis.image.voxel.binary |
The
BinaryVoxels class and related operations. |
org.anchoranalysis.image.voxel.binary.connected | |
org.anchoranalysis.image.voxel.buffer |
A buffer of voxel-values, usually corresponding to a single z-slice in
Voxels . |
org.anchoranalysis.image.voxel.buffer.primitive |
Conversion of both primitive data types and image structures between Anchor's data-structures and
other representations.
|
org.anchoranalysis.image.voxel.buffer.slice |
A container with voxel-buffers for each z-slice.
|
org.anchoranalysis.image.voxel.convert |
Converting
Voxels to different data-types. |
org.anchoranalysis.image.voxel.convert.bufferedimage |
Converts anchor data-structures to the
BufferedImage used by Java's AWT. |
org.anchoranalysis.image.voxel.convert.imglib2 |
Converts anchor data-structures to those used by ImgLib2.
|
org.anchoranalysis.image.voxel.extracter |
Methods to read/copy/duplicate portions of voxels.
|
org.anchoranalysis.image.voxel.factory |
Creates new instances of
Voxels and VoxelsUntyped with specific data-types. |
org.anchoranalysis.image.voxel.iterator |
Utilities to iterate over voxel-locations in images and sub-regions of images.
|
org.anchoranalysis.image.voxel.iterator.intersecting |
Like
org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over
the intersecting regions of two entities. |
org.anchoranalysis.image.voxel.iterator.neighbor |
Iterating over a point's neighboring voxels.
|
org.anchoranalysis.image.voxel.iterator.neighbor.kernel |
Routines for moving a
KernelPointCursor around the
neighboring voxels of the point. |
org.anchoranalysis.image.voxel.iterator.predicate |
Functional-interfaces for processing different combinations of points and buffers that return a
boolean.
|
org.anchoranalysis.image.voxel.kernel |
Applying a kernel via
convolution to voxels.
|
org.anchoranalysis.image.voxel.kernel.morphological |
Kernels that apply morphological operations.
|
org.anchoranalysis.image.voxel.kernel.outline |
Kernel to find outline voxels on an object.
|
org.anchoranalysis.image.voxel.object |
The fundamental data class that is an
ObjectMask
and related structures. |
org.anchoranalysis.image.voxel.object.morphological |
Morphological operations
applied to
ObjectMask s. |
org.anchoranalysis.image.voxel.object.morphological.predicate |
Predicates to match certain voxels as used in
org.anchoranalysis.image.voxel.object.morphological . |
org.anchoranalysis.image.voxel.projection |
Classes for calculating differnet kind of projections of voxel values across multiple buffers.
|
org.anchoranalysis.image.voxel.projection.extrema |
Classes for performing both a Maximum Intensity
Projection and a minimum projection.
|
org.anchoranalysis.image.voxel.resizer |
Different interpolator methods to use when scaling voxels.
|
org.anchoranalysis.image.voxel.thresholder |
Thresholding operations on voxels.
|
org.anchoranalysis.io.bioformats.copyconvert.tobyte |
Converts the byte stream opened by Bioformats into channels of
ByteBuffer . |
org.anchoranalysis.io.bioformats.copyconvert.toint |
Converts the byte stream opened by Bioformats into channels of
IntBuffer . |
org.anchoranalysis.io.imagej.convert |
Converts to and from ImageJ data-structures for images.
|
org.anchoranalysis.io.imagej.resizer |
Image interpolation when scaling using ImageJ.
|
org.anchoranalysis.mpp.mark.voxelized |
A mark after a voxel-representation has been inferred.
|
org.anchoranalysis.mpp.overlap |
Calculating overlaps between two
Mark s. |
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance |
Euclidean Distance Transform
implementations via FIJI.
|
org.anchoranalysis.plugin.fiji.bean.threshold |
Implementations of
Thresholder that use FIJI. |
org.anchoranalysis.plugin.image.bean.channel.convert |
Implementations of
ConvertChannelTo and ConvertChannelToWithHistogram . |
org.anchoranalysis.plugin.image.bean.segment.binary |
Implementations of
BinarySegmentation . |
org.anchoranalysis.plugin.image.segment.thresholder.slice |
Non-beans pertaining to segmenting a z-stack slice-by-slice.
|
org.anchoranalysis.plugin.image.segment.watershed.encoding |
Encoding voxels in a watershed-transformation implementation.
|
org.anchoranalysis.plugin.imagej.bean.threshold |
Implementations of
Thresholder that call ImageJ. |
org.anchoranalysis.plugin.imagej.channel.provider |
Implementations of
ChannelProvider that call ImageJ. |
org.anchoranalysis.plugin.imagej.mask |
Non-bean classes involving
ObjectMask that call ImageJ. |
org.anchoranalysis.plugin.mpp.bean.contour.visitscheduler |
The
VisitScheduler and related
classes, as used in TraverseOuterContourOnImage . |
org.anchoranalysis.plugin.mpp.bean.segment.binary |
Implementations of
BinarySegmentation
involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.feature.overlap |
Implementations of
CalculationPart to calculate
overlap between two entities. |
org.anchoranalysis.plugin.opencv.convert |
Conversion to/from OpenCV data-structures.
|
org.anchoranalysis.plugin.opencv.resizer |
Interpolation non-beans that use OpenCV.
|
org.anchoranalysis.test.image |
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
|
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
Class and Description |
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UnsignedBuffer
Base class for buffers that represent an unsigned-type in the signed-equivalent-type NIO
Buffer . |
UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedBuffer
Base class for buffers that represent an unsigned-type in the signed-equivalent-type NIO
Buffer . |
UnsignedBufferAsInt
A
UnsignedBuffer that exposes its internal types as int . |
UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
---|
UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
---|
UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedBufferAsInt
A
UnsignedBuffer that exposes its internal types as int . |
UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedIntBuffer
Wraps an
IntBuffer but automatically performs conversion to long . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
UnsignedShortBuffer
Wraps a
ShortBuffer but automatically performs conversion to int . |
Class and Description |
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UnsignedByteBuffer
Wraps a
ByteBuffer but automatically performs conversion to int . |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.