Uses of Package
org.anchoranalysis.image.voxel.buffer.primitive

Packages that use org.anchoranalysis.image.voxel.buffer.primitive

Package	Description
org.anchoranalysis.image.bean.displayer
org.anchoranalysis.image.bean.segment.binary	Base classes to perform binary-segmentation.
org.anchoranalysis.image.bean.threshold	Base classes for thresholding and calculating levels for thresholding.
org.anchoranalysis.image.core.bufferedimage	Conversions and operations involving Java AWT's BufferedImage.
org.anchoranalysis.image.core.channel.convert	Converts a channel to other data-types.
org.anchoranalysis.image.core.channel.convert.attached.channel	Converts a channel to another data-type based upon a Channel to which it is attached.
org.anchoranalysis.image.core.channel.convert.attached.histogram	Converts a channel to another data-type based upon a Histogram to which it is attached.
org.anchoranalysis.image.core.mask	An image with only two permissible states.
org.anchoranalysis.image.core.mask.combine	Binary operations involving voxelwise combination of Mask.
org.anchoranalysis.image.core.object.properties	An ObjectCollection with associated key-value pairs.
org.anchoranalysis.image.core.stack	Defines the key data object, Stack, and related classes.
org.anchoranalysis.image.inference.segment	Non-beans pertaining to segmentation of images via model inference.
org.anchoranalysis.image.voxel	Data-structures to store and manipulate image raster-data or voxels.
org.anchoranalysis.image.voxel.arithmetic	Arithmetic operations for Voxels.
org.anchoranalysis.image.voxel.assigner	Assigns values to some or all voxels.
org.anchoranalysis.image.voxel.binary	The BinaryVoxels class and related operations.
org.anchoranalysis.image.voxel.binary.connected	Creating an ObjectCollection that is a connected component labelling of a BinaryVoxels.
org.anchoranalysis.image.voxel.buffer	A buffer of voxel-values, usually corresponding to a single z-slice in Voxels.
org.anchoranalysis.image.voxel.buffer.primitive	Conversion of both primitive data types and image structures between Anchor's data-structures and other representations.
org.anchoranalysis.image.voxel.buffer.slice	A container with voxel-buffers for each z-slice.
org.anchoranalysis.image.voxel.convert	Converting Voxels to different data-types.
org.anchoranalysis.image.voxel.convert.bufferedimage	Converts anchor data-structures to the BufferedImage used by Java's AWT.
org.anchoranalysis.image.voxel.convert.imglib2	Converts anchor data-structures to those used by ImgLib2.
org.anchoranalysis.image.voxel.extracter	Methods to read/copy/duplicate portions of voxels.
org.anchoranalysis.image.voxel.factory	Creates new instances of Voxels and VoxelsUntyped with specific data-types.
org.anchoranalysis.image.voxel.iterator	Utilities to iterate over voxel-locations in images and sub-regions of images.
org.anchoranalysis.image.voxel.iterator.intersecting	Like org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over the intersecting regions of two entities.
org.anchoranalysis.image.voxel.iterator.neighbor	Iterating over a point's neighboring voxels.
org.anchoranalysis.image.voxel.iterator.neighbor.kernel	Routines for moving a KernelPointCursor around the neighboring voxels of the point.
org.anchoranalysis.image.voxel.iterator.predicate	Functional-interfaces for processing different combinations of points and buffers that return a boolean.
org.anchoranalysis.image.voxel.kernel	Applying a kernel via convolution to voxels.
org.anchoranalysis.image.voxel.kernel.morphological	Kernels that apply morphological operations.
org.anchoranalysis.image.voxel.kernel.outline	Kernel to find outline voxels on an object.
org.anchoranalysis.image.voxel.object	The fundamental data class that is an ObjectMask and related structures.
org.anchoranalysis.image.voxel.object.morphological	Morphological operations applied to ObjectMasks.
org.anchoranalysis.image.voxel.object.morphological.predicate	Predicates to match certain voxels as used in org.anchoranalysis.image.voxel.object.morphological.
org.anchoranalysis.image.voxel.projection	Classes for calculating differnet kind of projections of voxel values across multiple buffers.
org.anchoranalysis.image.voxel.projection.extrema	Classes for performing both a Maximum Intensity Projection and a minimum projection.
org.anchoranalysis.image.voxel.resizer	Different interpolator methods to use when scaling voxels.
org.anchoranalysis.image.voxel.thresholder	Thresholding operations on voxels.
org.anchoranalysis.io.bioformats.copyconvert.tobyte	Converts the byte stream opened by Bioformats into channels of ByteBuffer.
org.anchoranalysis.io.bioformats.copyconvert.toint	Converts the byte stream opened by Bioformats into channels of IntBuffer.
org.anchoranalysis.io.bioformats.copyconvert.toshort	Converts the byte stream opened by Bioformats into channels of ShortBuffer.
org.anchoranalysis.io.imagej.convert	Converts to and from ImageJ data-structures for images.
org.anchoranalysis.io.imagej.resizer	Image interpolation when scaling using ImageJ.
org.anchoranalysis.mpp.mark.voxelized	A mark after a voxel-representation has been inferred.
org.anchoranalysis.mpp.overlap	Calculating overlaps between two Marks.
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance	Euclidean Distance Transform implementations via FIJI.
org.anchoranalysis.plugin.fiji.bean.threshold	Implementations of Thresholder that use FIJI.
org.anchoranalysis.plugin.image.bean.channel.convert	Implementations of ConvertChannelTo and ConvertChannelToWithHistogram.
org.anchoranalysis.plugin.image.bean.segment.binary	Implementations of BinarySegmentation.
org.anchoranalysis.plugin.image.segment.thresholder.slice	Non-beans pertaining to segmenting a z-stack slice-by-slice.
org.anchoranalysis.plugin.image.segment.watershed.encoding	Encoding voxels in a watershed-transformation implementation.
org.anchoranalysis.plugin.imagej.bean.threshold	Implementations of Thresholder that call ImageJ.
org.anchoranalysis.plugin.imagej.channel.provider	Implementations of ChannelProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.mask	Non-bean classes involving ObjectMask that call ImageJ.
org.anchoranalysis.plugin.opencv.convert	Conversion to/from OpenCV data-structures.
org.anchoranalysis.plugin.opencv.resizer	Interpolation non-beans that use OpenCV.
org.anchoranalysis.test.image	Testing utilities and fixtures with no greater downstream dependency than anchor-image-io or anchor-io-bioformats or anchor-imagej.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.bean.displayer

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.bean.segment.binary

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.bean.threshold

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.bufferedimage

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.channel.convert

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.channel.convert.attached.channel

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.channel.convert.attached.histogram

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.mask

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.mask.combine

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.object.properties

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.core.stack

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.inference.segment

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.arithmetic

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.assigner

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.binary

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.binary.connected

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.buffer

Class	Description
UnsignedBuffer	Base class for buffers that represent an unsigned-type in the signed-equivalent-type NIO Buffer.
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.buffer.primitive

Class	Description
UnsignedBuffer	Base class for buffers that represent an unsigned-type in the signed-equivalent-type NIO Buffer.
UnsignedBufferAsInt	A UnsignedBuffer that exposes its internal types as int.
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.buffer.slice

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.convert

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.convert.bufferedimage

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.convert.imglib2

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.extracter

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.factory

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.iterator

Class	Description
UnsignedBufferAsInt	A UnsignedBuffer that exposes its internal types as int.
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.iterator.intersecting

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.iterator.neighbor

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.iterator.neighbor.kernel

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.iterator.predicate

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.kernel

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.kernel.morphological

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.kernel.outline

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.object

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.object.morphological

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.object.morphological.predicate

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.projection

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.projection.extrema

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.resizer

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.image.voxel.thresholder

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.io.bioformats.copyconvert.tobyte

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.io.bioformats.copyconvert.toint

Class	Description
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.io.bioformats.copyconvert.toshort

Class	Description
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.io.imagej.convert

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.io.imagej.resizer

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.mpp.mark.voxelized

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.mpp.overlap

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.fiji.bean.channel.provider.distance

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.fiji.bean.threshold

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.image.bean.channel.convert

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.image.bean.segment.binary

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.image.segment.thresholder.slice

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.image.segment.watershed.encoding

Class	Description
UnsignedIntBuffer	Wraps an IntBuffer but automatically performs conversion to long.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.imagej.bean.threshold

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.imagej.channel.provider

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.imagej.mask

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.opencv.convert

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.plugin.opencv.resizer

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.
UnsignedShortBuffer	Wraps a ShortBuffer but automatically performs conversion to int.

Classes in org.anchoranalysis.image.voxel.buffer.primitive used by org.anchoranalysis.test.image

Class	Description
UnsignedByteBuffer	Wraps a ByteBuffer but automatically performs conversion to int.