Package | Description |
---|---|
org.anchoranalysis.image.bean.segment.binary |
Base classes to perform binary-segmentation.
|
org.anchoranalysis.image.bean.threshold |
Base classes for thresholding and calculating levels for thresholding.
|
org.anchoranalysis.image.core.bufferedimage |
Conversions and operations involving Java AWT's
BufferedImage . |
org.anchoranalysis.image.core.channel |
The
Channel core data-class and related operations
and converters. |
org.anchoranalysis.image.core.channel.factory |
Factory classes for creating
Channel for various
voxel data-types. |
org.anchoranalysis.image.core.mask |
An image with only two permissible states.
|
org.anchoranalysis.image.core.mask.combine |
Binary operations involving voxelwise combination of
Mask . |
org.anchoranalysis.image.core.object |
The key data entity
org.anchoranalysis.image.voxel.object and related-classes and
operations. |
org.anchoranalysis.image.core.object.label |
Labelling elements (object-masks or similar) with unique successive integers in a channel.
|
org.anchoranalysis.image.core.stack |
Defines the key data object,
Stack , and related
classes. |
org.anchoranalysis.image.inference.segment |
Non-beans pertaining to segmentation of images via model inference.
|
org.anchoranalysis.image.voxel |
Data-structures to store and manipulate image raster-data or voxels.
|
org.anchoranalysis.image.voxel.assigner |
Assigns values to some or all voxels.
|
org.anchoranalysis.image.voxel.binary |
The
BinaryVoxels class and related operations. |
org.anchoranalysis.image.voxel.buffer |
A buffer of voxel-values, usually corresponding to a single z-slice in
Voxels . |
org.anchoranalysis.image.voxel.convert |
Converting
Voxels to different data-types. |
org.anchoranalysis.image.voxel.convert.bufferedimage |
Converts anchor data-structures to the
BufferedImage used by Java's AWT. |
org.anchoranalysis.image.voxel.convert.imglib2 |
Converts anchor data-structures to those used by ImgLib2.
|
org.anchoranalysis.image.voxel.extracter |
Methods to read/copy/duplicate portions of voxels.
|
org.anchoranalysis.image.voxel.extracter.predicate |
Methods to find or count voxels that satisfy a predicate.
|
org.anchoranalysis.image.voxel.factory |
Creates new instances of
Voxels and VoxelsUntyped with specific data-types. |
org.anchoranalysis.image.voxel.iterator |
Utilities to iterate over voxel-locations in images and sub-regions of images.
|
org.anchoranalysis.image.voxel.iterator.intersecting |
Like
org.anchoranalysis.image.voxel.iterator but refers to iterators that operation over
the intersecting regions of two entities. |
org.anchoranalysis.image.voxel.kernel |
Applying a kernel via
convolution to voxels.
|
org.anchoranalysis.image.voxel.object |
The fundamental data class that is an
ObjectMask
and related structures. |
org.anchoranalysis.image.voxel.resizer |
Different interpolator methods to use when scaling voxels.
|
org.anchoranalysis.image.voxel.statistics |
Statistics about aggregated voxel intensities.
|
org.anchoranalysis.image.voxel.thresholder |
Thresholding operations on voxels.
|
org.anchoranalysis.io.bioformats.copyconvert |
Converts the byte stream opened by Bioformats into channels of particular data-type.
|
org.anchoranalysis.io.imagej.convert |
Converts to and from ImageJ data-structures for images.
|
org.anchoranalysis.mpp.mark.voxelized |
A mark after a voxel-representation has been inferred.
|
org.anchoranalysis.mpp.overlap |
Calculating overlaps between two
Mark s. |
org.anchoranalysis.plugin.fiji.bean.channel.grayscalereconstruction |
Morphological grayscale-reconstruction algorithm.
|
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance |
Euclidean Distance Transform
implementations via FIJI.
|
org.anchoranalysis.plugin.fiji.bean.threshold |
Implementations of
Thresholder that use FIJI. |
org.anchoranalysis.plugin.image.bean.blur |
Filters that perform blurring.
|
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.minima.grayscalereconstruction |
Grayscale reconstruction to support the Watershed transformation.
|
org.anchoranalysis.plugin.image.bean.segment.binary |
Implementations of
BinarySegmentation . |
org.anchoranalysis.plugin.image.segment.thresholder.slice |
Non-beans pertaining to segmenting a z-stack slice-by-slice.
|
org.anchoranalysis.plugin.image.segment.watershed.encoding |
Encoding voxels in a watershed-transformation implementation.
|
org.anchoranalysis.plugin.imagej.bean.threshold |
Implementations of
Thresholder that call ImageJ. |
org.anchoranalysis.plugin.mpp.bean.segment.binary |
Implementations of
BinarySegmentation
involving Mark or related classes. |
org.anchoranalysis.plugin.mpp.feature.overlap |
Implementations of
CalculationPart to calculate
overlap between two entities. |
org.anchoranalysis.plugin.opencv.convert |
Conversion to/from OpenCV data-structures.
|
org.anchoranalysis.test.image |
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
|
Class and Description |
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VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
VoxelsUntyped
Stores memory buffers representing image voxels, without explicit typing of buffers.
|
Class and Description |
---|
BoundedVoxels
Voxels that exist within a particular bounding-box in an image. |
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Class and Description |
---|
Voxels
A box (3-dimensions) with voxel-data.
|
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.