Package | Description |
---|---|
org.anchoranalysis.experiment.bean.log |
Different approaches to where messages on the progress/status of an experiment are logged to.
|
org.anchoranalysis.experiment.bean.processor |
How a task is executed on multiple inputs.
|
org.anchoranalysis.experiment.bean.task |
Defines a task,
which is a set of operations run on an input, that may or may not generate an output.
|
org.anchoranalysis.experiment.io |
Interfaces for replacing attributes of an experiment: input, output, task etc.
|
org.anchoranalysis.experiment.log |
Helpful classes for logging.
|
org.anchoranalysis.experiment.task |
Non-bean classes related to a
Task . |
org.anchoranalysis.feature.io.csv |
Metadata for writing feature calculation-results in CSV format.
|
org.anchoranalysis.feature.io.results |
Writes feature-calculation results in different formats, also grouped results.
|
org.anchoranalysis.feature.io.results.group |
Various different outputs that can be written for the a grouped version of the results in
LabelledResultsCollector . |
org.anchoranalysis.image.io |
Reading and writing of image-related data objects to and from the filesystem.
|
org.anchoranalysis.image.io.bean.object.feature |
Beans to specify the outputting of features into CSV from a
ObjectCollection . |
org.anchoranalysis.image.io.stack.output |
Non-bean classes for writing a
Stack to the
filesystem. |
org.anchoranalysis.io.generator.collection |
Outputting more than one element collectively using a generator.
|
org.anchoranalysis.io.generator.sequence |
Writing a sequence of elements using a generator.
|
org.anchoranalysis.io.generator.tabular |
Generators for writing tabular data, including CSV.
|
org.anchoranalysis.io.generator.text |
Generators for writing textual data, including strings.
|
org.anchoranalysis.io.output.bean |
Beans for the framework around writing files to the file-system.
|
org.anchoranalysis.io.output.outputter |
Classes for outputting to particular directories.
|
org.anchoranalysis.io.output.outputter.directory |
BoundDirectory and related classes. |
org.anchoranalysis.io.output.writer |
Allows a generators to write element(s) to the filesystem.
|
org.anchoranalysis.mpp.io.output |
Non-beans for writing data structures related to marked point processes from the file system.
|
org.anchoranalysis.mpp.segment.bean |
Beans for segmentation algorithms related to marked-point-processes.
|
org.anchoranalysis.mpp.segment.bean.define |
DefineOutputter and its sub-classes. |
org.anchoranalysis.mpp.segment.bean.optimization.feedback |
Providing feedback on the progress of a
OptimizationScheme . |
org.anchoranalysis.mpp.segment.optimization |
Non-bean classes used in
org.anchoranalysis.mpp.segment.bean.optimization |
org.anchoranalysis.plugin.annotation.bean.aggregate |
Beans to combine two or more annotations.
|
org.anchoranalysis.plugin.annotation.bean.comparison |
Task to compare a set of annotations to a segmentation or another set of annotations.
|
org.anchoranalysis.plugin.annotation.bean.comparison.assigner |
Pairs annotations from two different sets, creating an assignment of some type.
|
org.anchoranalysis.plugin.image.task.bean |
A parent package for many different kinds of tasks.
|
org.anchoranalysis.plugin.image.task.bean.combine |
Combining multiple images together into a single image.
|
org.anchoranalysis.plugin.image.task.bean.feature |
Tasks pertaining to
Feature s. |
org.anchoranalysis.plugin.image.task.bean.format |
Tasks for converting image-formats.
|
org.anchoranalysis.plugin.image.task.bean.grouped |
Tasks that involved stacks (usually each channel from an image) that are somehow
grouped-together.
|
org.anchoranalysis.plugin.image.task.bean.grouped.histogram |
Task(s) to export histograms of intensity values.
|
org.anchoranalysis.plugin.image.task.bean.labeller |
Associating labels with images.
|
org.anchoranalysis.plugin.image.task.bean.scale |
Tasks to scale an image.
|
org.anchoranalysis.plugin.image.task.bean.segment |
Tasks to segment an image.
|
org.anchoranalysis.plugin.image.task.bean.slice |
Tasks that process on one or more slices from a z-stack.
|
org.anchoranalysis.plugin.image.task.feature |
Non-bean classes pertaining to
Feature s as used in tasks. |
org.anchoranalysis.plugin.image.task.feature.calculator |
Non-beans for calculating
Feature s. |
org.anchoranalysis.plugin.image.task.grouped |
Non-bean classes about grouping channels or other inputs.
|
org.anchoranalysis.plugin.image.task.labeller |
Non-bean classes about labelling images.
|
org.anchoranalysis.plugin.image.task.segment |
Non-bean classes for image-segmentation.
|
org.anchoranalysis.plugin.image.task.stack |
Non-bean classes pertaining to stacks and channels as used in tasks.
|
org.anchoranalysis.plugin.io.bean.task |
Implementations of
Task related to file-system
I/O. |
org.anchoranalysis.plugin.io.shared |
Objects used in shared-state in
Task s in this
plugin. |
org.anchoranalysis.plugin.mpp.experiment.bean.convert |
Converting from
NamedChannelsInput to the
input-type expected by a Task . |
org.anchoranalysis.plugin.mpp.experiment.bean.feature.report.task |
Tasks that calculate and export
ReportFeature s. |
org.anchoranalysis.plugin.mpp.experiment.bean.objects |
Tasks involving
ObjectMask s. |
org.anchoranalysis.plugin.mpp.experiment.bean.segment |
Tasks that segment an image to produce a
MarkCollection . |
org.anchoranalysis.plugin.mpp.segment.bean.marks |
Beans to perform segmentation involving
Mark s and related
classes. |
org.anchoranalysis.plugin.mpp.segment.shared |
Stared-state for segmentation tasks involving mark-point-processes.
|
org.anchoranalysis.test.image |
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
|
org.anchoranalysis.test.image.io |
Utilities for testing-related reading and writing to the filesystem.
|
org.anchoranalysis.test.io.output |
Fixtures for an
OutputManager and related-classes. |
Class and Description |
---|
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
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Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContextSubdirectoryCache
Caches a
InputOutputContext for each subdirectory as they are created. |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
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OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
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OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
BindFailedException |
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
OutputWriteContext
Settings and user-arguments for writing files.
|
Class and Description |
---|
BindFailedException |
DirectoryCreationParameters
Options that influence how an output directory is created.
|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
OutputWriteContext
Settings and user-arguments for writing files.
|
Class and Description |
---|
BindFailedException |
DirectoryCreationParameters
Options that influence how an output directory is created.
|
Class and Description |
---|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
Class and Description |
---|
InputOutputContext
A context for performing input generally and outputting to a particular output-directory.
|
Class and Description |
---|
BindFailedException |
Outputter
Like
OutputterChecked but exceptions are reported in a ErrorReporter . |
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Class and Description |
---|
BindFailedException |
OutputterChecked
A particular directory on the filesystem in which outputting can occur.
|
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.