Uses of Package
org.anchoranalysis.io.output.outputter

Packages that use org.anchoranalysis.io.output.outputter

Package	Description
org.anchoranalysis.experiment.bean.log	Different approaches to where messages on the progress/status of an experiment are logged to.
org.anchoranalysis.experiment.bean.processor	How a task is executed on multiple inputs.
org.anchoranalysis.experiment.bean.task	Defines a task, which is a set of operations run on an input, that may or may not generate an output.
org.anchoranalysis.experiment.io	Interfaces for replacing attributes of an experiment: input, output, task etc.
org.anchoranalysis.experiment.log	Helpful classes for logging.
org.anchoranalysis.experiment.task	Non-bean classes related to a Task.
org.anchoranalysis.feature.io.csv	Metadata for writing feature calculation-results in CSV format.
org.anchoranalysis.feature.io.results	Writes feature-calculation results in different formats, also grouped results.
org.anchoranalysis.feature.io.results.group	Various different outputs that can be written for the a grouped version of the results in LabelledResultsCollector.
org.anchoranalysis.image.io	Reading and writing of image-related data objects to and from the filesystem.
org.anchoranalysis.image.io.bean.object.feature	Beans to specify the outputting of features into CSV from a ObjectCollection.
org.anchoranalysis.image.io.stack.output	Non-bean classes for writing a Stack to the filesystem.
org.anchoranalysis.io.generator.collection	Outputting more than one element collectively using a generator.
org.anchoranalysis.io.generator.sequence	Writing a sequence of elements using a generator.
org.anchoranalysis.io.generator.tabular	Generators for writing tabular data, including CSV.
org.anchoranalysis.io.generator.text	Generators for writing textual data, including strings.
org.anchoranalysis.io.output.bean	Beans for the framework around writing files to the file-system.
org.anchoranalysis.io.output.outputter	Classes for outputting to particular directories.
org.anchoranalysis.io.output.outputter.directory	BoundDirectory and related classes.
org.anchoranalysis.io.output.writer	Allows a generators to write element(s) to the filesystem.
org.anchoranalysis.mpp.io.output	Non-beans for writing data structures related to marked point processes from the file system.
org.anchoranalysis.plugin.annotation.bean.aggregate	Beans to combine two or more annotations.
org.anchoranalysis.plugin.annotation.bean.comparison	Task to compare a set of annotations to a segmentation or another set of annotations.
org.anchoranalysis.plugin.annotation.bean.comparison.assigner	Pairs annotations from two different sets, creating an assignment of some type.
org.anchoranalysis.plugin.image.task.bean	A parent package for many different kinds of tasks.
org.anchoranalysis.plugin.image.task.bean.combine	Combining multiple images together into a single image.
org.anchoranalysis.plugin.image.task.bean.feature	Tasks pertaining to Features.
org.anchoranalysis.plugin.image.task.bean.format	Tasks for converting image-formats.
org.anchoranalysis.plugin.image.task.bean.grouped	Tasks that involved stacks (usually each channel from an image) that are somehow grouped-together.
org.anchoranalysis.plugin.image.task.bean.grouped.histogram	Task(s) to export histograms of intensity values.
org.anchoranalysis.plugin.image.task.bean.labeller	Associating labels with images.
org.anchoranalysis.plugin.image.task.bean.scale	Tasks to scale an image.
org.anchoranalysis.plugin.image.task.bean.segment	Tasks to segment an image.
org.anchoranalysis.plugin.image.task.bean.slice	Tasks that process on one or more slices from a z-stack.
org.anchoranalysis.plugin.image.task.feature	Non-bean classes pertaining to Features as used in tasks.
org.anchoranalysis.plugin.image.task.feature.calculator	Non-beans for calculating Features.
org.anchoranalysis.plugin.image.task.grouped	Non-bean classes about grouping channels or other inputs.
org.anchoranalysis.plugin.image.task.labeller	Non-bean classes about labelling images.
org.anchoranalysis.plugin.image.task.segment	Non-bean classes for image-segmentation.
org.anchoranalysis.plugin.image.task.stack	Non-bean classes pertaining to stacks and channels as used in tasks.
org.anchoranalysis.plugin.io.bean.task	Implementations of Task related to file-system I/O.
org.anchoranalysis.plugin.io.shared	Objects used in shared-state in Tasks in this plugin.
org.anchoranalysis.plugin.mpp.bean.convert	Converting from NamedChannelsInput to the input-type expected by a Task.
org.anchoranalysis.plugin.mpp.bean.define	Beans related to Define involving Mark or related classes.
org.anchoranalysis.test.image	Testing utilities and fixtures with no greater downstream dependency than anchor-image-io or anchor-io-bioformats or anchor-imagej.
org.anchoranalysis.test.image.io	Utilities for testing-related reading and writing to the filesystem.
org.anchoranalysis.test.io.output	Fixtures for an OutputManager and related-classes.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.experiment.bean.log

Class	Description
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.experiment.bean.processor

Class	Description
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.experiment.bean.task

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.experiment.io

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.experiment.log

Class	Description
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.experiment.task

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.feature.io.csv

Class	Description
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.feature.io.results

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.feature.io.results.group

Class	Description
InputOutputContextSubdirectoryCache	Caches a InputOutputContext for each subdirectory as they are created.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.image.io

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.image.io.bean.object.feature

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.image.io.stack.output

Class	Description
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.generator.collection

Class	Description
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.generator.sequence

Class	Description
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.generator.tabular

Class	Description
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.generator.text

Class	Description
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.output.bean

Class	Description
BindFailedException	When an outputter cannot be successfully bound to an output directory.
OutputterChecked	A particular directory on the filesystem in which outputting can occur.
OutputWriteContext	Settings and user-arguments for writing files.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.output.outputter

Class	Description
BindFailedException	When an outputter cannot be successfully bound to an output directory.
DirectoryCreationParameters	Options that influence how an output directory is created.
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.
OutputterChecked	A particular directory on the filesystem in which outputting can occur.
OutputWriteContext	Settings and user-arguments for writing files.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.output.outputter.directory

Class	Description
BindFailedException	When an outputter cannot be successfully bound to an output directory.
DirectoryCreationParameters	Options that influence how an output directory is created.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.io.output.writer

Class	Description
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.mpp.io.output

Class	Description
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.annotation.bean.aggregate

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.annotation.bean.comparison

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.annotation.bean.comparison.assigner

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.combine

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.feature

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.format

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.grouped

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.grouped.histogram

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.labeller

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.scale

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.segment

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.bean.slice

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.feature

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.feature.calculator

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.grouped

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.labeller

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.segment

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.image.task.stack

Class	Description
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.io.bean.task

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.io.shared

Class	Description
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.mpp.bean.convert

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.plugin.mpp.bean.define

Class	Description
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.test.image

Class	Description
InputOutputContext	A context for performing input generally and outputting to a particular output-directory.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.test.image.io

Class	Description
BindFailedException	When an outputter cannot be successfully bound to an output directory.
Outputter	Like OutputterChecked but exceptions are reported in a ErrorReporter.
OutputterChecked	A particular directory on the filesystem in which outputting can occur.

Classes in org.anchoranalysis.io.output.outputter used by org.anchoranalysis.test.io.output

Class	Description
BindFailedException	When an outputter cannot be successfully bound to an output directory.
OutputterChecked	A particular directory on the filesystem in which outputting can occur.