Modifier and Type | Method and Description |
---|---|
VoxelizedMarksWithEnergy |
VoxelizedMarksWithEnergy.deepCopy()
Creates a deep-copy of the marks
|
VoxelizedMarksWithEnergy |
VoxelizedMarksWithEnergy.shallowCopy()
Creates a shallow-copy of the marks
|
Modifier and Type | Method and Description |
---|---|
protected abstract Optional<T> |
PeriodicSubdirectoryReporter.generateIterableElement(Reporting<VoxelizedMarksWithEnergy> reporting) |
void |
PeriodicSubdirectoryReporter.reportBegin(FeedbackBeginParameters<VoxelizedMarksWithEnergy> optInit) |
void |
PeriodicSubdirectoryReporter.reportEnd(FeedbackEndParameters<VoxelizedMarksWithEnergy> parameters) |
Modifier and Type | Method and Description |
---|---|
Optional<VoxelizedMarksWithEnergy> |
KernelBirthAndKill.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelSplit.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelMerge.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelExchange.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelInitialMarksVoxelized.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Modifier and Type | Method and Description |
---|---|
void |
KernelBirthAndKill.updateAfterAcceptance(UpdatableMarksList updatableState,
VoxelizedMarksWithEnergy exst,
VoxelizedMarksWithEnergy accptd) |
void |
KernelSplit.updateAfterAcceptance(UpdatableMarksList updatableState,
VoxelizedMarksWithEnergy exst,
VoxelizedMarksWithEnergy accptd) |
void |
KernelMerge.updateAfterAcceptance(UpdatableMarksList updatableState,
VoxelizedMarksWithEnergy existing,
VoxelizedMarksWithEnergy accpted) |
void |
KernelExchange.updateAfterAcceptance(UpdatableMarksList updatableState,
VoxelizedMarksWithEnergy existing,
VoxelizedMarksWithEnergy accpted) |
void |
KernelInitialMarksVoxelized.updateAfterAcceptance(UpdatableMarksList updatableState,
VoxelizedMarksWithEnergy exst,
VoxelizedMarksWithEnergy accptd) |
Modifier and Type | Method and Description |
---|---|
Optional<VoxelizedMarksWithEnergy> |
KernelBirthAndKill.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelSplit.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelMerge.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelExchange.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Optional<VoxelizedMarksWithEnergy> |
KernelInitialMarksVoxelized.makeProposal(Optional<VoxelizedMarksWithEnergy> existing,
KernelCalculationContext context) |
Modifier and Type | Method and Description |
---|---|
protected Optional<VoxelizedMarksWithEnergy> |
KernelBirthVoxelized.calculateForNewMark(VoxelizedMarksWithEnergy exst,
Set<Mark> listMarksNew,
KernelCalculationContext context) |
protected Optional<KernelDeath.MarkAnd<Mark,VoxelizedMarksWithEnergy>> |
KernelDeathVoxelized.removeAndUpdateEnergy(VoxelizedMarksWithEnergy exst,
ProposerContext context) |
Modifier and Type | Method and Description |
---|---|
protected Optional<VoxelizedMarksWithEnergy> |
KernelBirthVoxelized.calculateForNewMark(VoxelizedMarksWithEnergy exst,
Set<Mark> listMarksNew,
KernelCalculationContext context) |
protected Optional<Set<Mark>> |
KernelBirthVoxelized.proposeNewMarks(VoxelizedMarksWithEnergy exst,
int number,
KernelCalculationContext context) |
protected Optional<KernelDeath.MarkAnd<Mark,VoxelizedMarksWithEnergy>> |
KernelDeathVoxelized.removeAndUpdateEnergy(VoxelizedMarksWithEnergy exst,
ProposerContext context) |
void |
KernelDeathVoxelized.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
VoxelizedMarksWithEnergy energyExisting,
VoxelizedMarksWithEnergy energyNew) |
void |
KernelBirthVoxelized.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
VoxelizedMarksWithEnergy exst,
VoxelizedMarksWithEnergy accepted) |
Modifier and Type | Method and Description |
---|---|
VoxelizedMarksWithEnergy |
PointsFitter.transform(MarkCollection in,
TransformationContext context) |
Modifier and Type | Method and Description |
---|---|
FeedbackReceiverBean<VoxelizedMarksWithEnergy> |
SegmentWithMarkedPointProcess.getFeedbackReceiver()
Processes feedback from the segmentation algorithm for outputting / debugging.
|
KernelProposer<VoxelizedMarksWithEnergy,UpdatableMarksList> |
SegmentWithMarkedPointProcess.getKernelProposer()
Proposes kernel-changes during iterations of hte marked-point-processes.
|
OptimizationScheme<VoxelizedMarksWithEnergy,VoxelizedMarksWithEnergy,UpdatableMarksList> |
SegmentWithMarkedPointProcess.getOptimization()
The optimization-scheme that determines which configurations are accepted/rejected from one
iteration to the next.
|
OptimizationScheme<VoxelizedMarksWithEnergy,VoxelizedMarksWithEnergy,UpdatableMarksList> |
SegmentWithMarkedPointProcess.getOptimization()
The optimization-scheme that determines which configurations are accepted/rejected from one
iteration to the next.
|
Modifier and Type | Method and Description |
---|---|
void |
SegmentWithMarkedPointProcess.setFeedbackReceiver(FeedbackReceiverBean<VoxelizedMarksWithEnergy> feedbackReceiver)
Processes feedback from the segmentation algorithm for outputting / debugging.
|
void |
SegmentWithMarkedPointProcess.setKernelProposer(KernelProposer<VoxelizedMarksWithEnergy,UpdatableMarksList> kernelProposer)
Proposes kernel-changes during iterations of hte marked-point-processes.
|
void |
SegmentWithMarkedPointProcess.setOptimization(OptimizationScheme<VoxelizedMarksWithEnergy,VoxelizedMarksWithEnergy,UpdatableMarksList> optimization)
The optimization-scheme that determines which configurations are accepted/rejected from one
iteration to the next.
|
void |
SegmentWithMarkedPointProcess.setOptimization(OptimizationScheme<VoxelizedMarksWithEnergy,VoxelizedMarksWithEnergy,UpdatableMarksList> optimization)
The optimization-scheme that determines which configurations are accepted/rejected from one
iteration to the next.
|
Modifier and Type | Method and Description |
---|---|
VoxelizedMarksWithEnergy |
RetrieveDestinationFromDual.transform(DualVoxelizedMarks in,
TransformationContext context) |
VoxelizedMarksWithEnergy |
RetrieveSourceFromDual.transform(DualVoxelizedMarks in,
TransformationContext context) |
Modifier and Type | Method and Description |
---|---|
StateTransformerBean<MarkCollection,VoxelizedMarksWithEnergy> |
AddDualTransformer.getTransformerMarks() |
Modifier and Type | Method and Description |
---|---|
DualVoxelizedMarks |
AddDualTransformer.transform(VoxelizedMarksWithEnergy in,
TransformationContext context) |
Modifier and Type | Method and Description |
---|---|
void |
AddDualTransformer.setTransformerMarks(StateTransformerBean<MarkCollection,VoxelizedMarksWithEnergy> transformerMarks) |
Modifier and Type | Method and Description |
---|---|
VoxelizedMarksWithEnergy |
AddEnergy.transform(MarkCollection in,
TransformationContext context) |
VoxelizedMarksWithEnergy |
RetrieveDestinationFromVoxelized.transform(ToVoxelized<T> in,
TransformationContext context) |
Modifier and Type | Method and Description |
---|---|
StateTransformerBean<T,VoxelizedMarksWithEnergy> |
VoxelizeWithTransform.getTransformer() |
Modifier and Type | Method and Description |
---|---|
void |
VoxelizeWithTransform.setTransformer(StateTransformerBean<T,VoxelizedMarksWithEnergy> transformer) |
Constructor and Description |
---|
VoxelizeWithTransform(StateTransformerBean<T,VoxelizedMarksWithEnergy> transformer) |
Modifier and Type | Method and Description |
---|---|
double |
FromVoxelizedMarksWithEnergy.extractScore(VoxelizedMarksWithEnergy item) |
int |
FromVoxelizedMarksWithEnergy.extractSize(VoxelizedMarksWithEnergy item) |
Modifier and Type | Method and Description |
---|---|
StateTransformerBean<T,VoxelizedMarksWithEnergy> |
KernelStateBridgePixelize.getTransformer() |
Modifier and Type | Method and Description |
---|---|
void |
KernelStateBridgePixelize.setTransformer(StateTransformerBean<T,VoxelizedMarksWithEnergy> transformer) |
Modifier and Type | Method and Description |
---|---|
protected AggregateReceiver<VoxelizedMarksWithEnergy> |
OptimizationStepLogReporter.getAggregateReceiver() |
protected AggregateReceiver<VoxelizedMarksWithEnergy> |
Log4JReporter.getAggregateReceiver() |
protected AggregateReceiver<VoxelizedMarksWithEnergy> |
TextFile.getAggregateReceiver() |
protected AggregateReceiver<VoxelizedMarksWithEnergy> |
MemoryUsageReporter.getAggregateReceiver() |
protected AggregateReceiver<VoxelizedMarksWithEnergy> |
ConsoleAggregatedReporter.getAggregateReceiver() |
protected AggregateReceiver<VoxelizedMarksWithEnergy> |
CSVReporterAggregated.getAggregateReceiver() |
Modifier and Type | Method and Description |
---|---|
StateTransformerBean<T,VoxelizedMarksWithEnergy> |
StateReporterToPixelized.getSecondary() |
StateTransformer<ToVoxelized<T>,VoxelizedMarksWithEnergy> |
StateReporterToPixelized.primaryReport() |
Optional<StateTransformer<ToVoxelized<T>,VoxelizedMarksWithEnergy>> |
StateReporterToPixelized.secondaryReport() |
Modifier and Type | Method and Description |
---|---|
void |
StateReporterToPixelized.setSecondary(StateTransformerBean<T,VoxelizedMarksWithEnergy> secondary) |
Modifier and Type | Method and Description |
---|---|
static VoxelizedMarksWithEnergy |
VoxelizedMarksWithEnergyFactory.createFromMarks(MarkCollection marks,
KernelCalculationContext context,
Logger logger) |
VoxelizedMarksWithEnergy |
DualVoxelizedMarks.getDestination() |
VoxelizedMarksWithEnergy |
ToVoxelized.getDestination() |
VoxelizedMarksWithEnergy |
DualVoxelizedMarks.getSource() |
Constructor and Description |
---|
DualVoxelizedMarks(VoxelizedMarksWithEnergy source,
VoxelizedMarksWithEnergy destination) |
ToVoxelized(T source,
VoxelizedMarksWithEnergy destination) |
Constructor and Description |
---|
SegmentMarksState(KernelProposer<VoxelizedMarksWithEnergy,UpdatableMarksList> kernelProposer,
Define define) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.