Package | Description |
---|---|
org.anchoranalysis.mpp.feature.energy.marks |
Non-bean classes pertaining to calculating energy of {org.anchoranalysis.mpp.mark.Mark}s.
|
org.anchoranalysis.plugin.mpp.segment.bean.kernel.dependent.mark |
Implementations of
KernelBirth that are
dependent. |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent |
Implementations of
KernelBirth that are
independent. |
org.anchoranalysis.plugin.mpp.segment.bean.kernel.independent.voxelized |
Implementations of
KernelBirth that are
independent but use the voxelized state of a Mark . |
org.anchoranalysis.plugin.mpp.segment.bean.marks |
Beans to perform segmentation involving
Mark s and related
classes. |
org.anchoranalysis.plugin.mpp.segment.bean.optimization.scheme |
Implementations of
OptimizationScheme . |
org.anchoranalysis.plugin.mpp.segment.shared |
Stared-state for segmentation tasks involving mark-point-processes.
|
Modifier and Type | Method and Description |
---|---|
void |
VoxelizedMarksWithEnergy.addAllToUpdatablePairList(UpdatableMarksList updatablePairList) |
void |
VoxelizedMarksWithEnergy.addToUpdatablePairList(UpdatableMarksList updatablePairList,
VoxelizedMarkMemo memo) |
void |
VoxelizedMarksWithEnergy.exchangeOnUpdatablePairList(UpdatableMarksList updatablePairList,
Mark markExst,
VoxelizedMarkMemo memoNew) |
void |
VoxelizedMarksWithEnergy.rmvFromUpdatablePairList(UpdatableMarksList updatablePairList,
Mark mark) |
Modifier and Type | Method and Description |
---|---|
void |
KernelDeathPartition.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
MarksFromPartition energyExisting,
MarksFromPartition energyNew) |
void |
KernelBirthPartition.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
MarksFromPartition energyExisting,
MarksFromPartition energyNew) |
Modifier and Type | Method and Description |
---|---|
void |
KernelDeathVoxelized.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
VoxelizedMarksWithEnergy energyExisting,
VoxelizedMarksWithEnergy energyNew) |
void |
KernelBirthVoxelized.updateAfterAcceptance(UpdatableMarksList updatableMarkSetCollection,
VoxelizedMarksWithEnergy exst,
VoxelizedMarksWithEnergy accepted) |
Modifier and Type | Method and Description |
---|---|
KernelProposer<VoxelizedMarksWithEnergy,UpdatableMarksList> |
SegmentWithMarkedPointProcess.getKernelProposer()
Proposes kernel-changes during iterations of hte marked-point-processes.
|
OptimizationScheme<VoxelizedMarksWithEnergy,VoxelizedMarksWithEnergy,UpdatableMarksList> |
SegmentWithMarkedPointProcess.getOptimization()
The optimization-scheme that determines which configurations are accepted/rejected from one
iteration to the next.
|
Modifier and Type | Method and Description |
---|---|
void |
SegmentWithMarkedPointProcess.setKernelProposer(KernelProposer<VoxelizedMarksWithEnergy,UpdatableMarksList> kernelProposer)
Proposes kernel-changes during iterations of hte marked-point-processes.
|
void |
SegmentWithMarkedPointProcess.setOptimization(OptimizationScheme<VoxelizedMarksWithEnergy,VoxelizedMarksWithEnergy,UpdatableMarksList> optimization)
The optimization-scheme that determines which configurations are accepted/rejected from one
iteration to the next.
|
Modifier and Type | Method and Description |
---|---|
S |
SimulatedAnnealing.findOptimum(KernelProposer<U,UpdatableMarksList> proposer,
UpdatableMarksList marks,
FeedbackReceiver<S> feedback,
OptimizationContext initContext) |
Modifier and Type | Method and Description |
---|---|
S |
SimulatedAnnealing.findOptimum(KernelProposer<U,UpdatableMarksList> proposer,
UpdatableMarksList marks,
FeedbackReceiver<S> feedback,
OptimizationContext initContext) |
Constructor and Description |
---|
SegmentMarksState(KernelProposer<VoxelizedMarksWithEnergy,UpdatableMarksList> kernelProposer,
Define define) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.