Uses of Class
org.anchoranalysis.bean.BeanInstanceMap

Packages that use BeanInstanceMap

Package	Description
org.anchoranalysis.bean	Defining, loading, initializing Anchor Beans.
org.anchoranalysis.bean.permute.property	Applying permutations to the properties of a bean.
org.anchoranalysis.bean.xml	Reading Beans from XML files.
org.anchoranalysis.bean.xml.factory	Custom factories for loading beans in custom ways from XML.
org.anchoranalysis.experiment.bean.processor	How a task is executed on multiple inputs.
org.anchoranalysis.experiment.task.processor	Non-bean classes related to JobProcessor.
org.anchoranalysis.image.bean.displayer
org.anchoranalysis.image.bean.spatial.arrange.align	Aligning a BoundingBox to fit inside another BoundingBox.
org.anchoranalysis.image.bean.spatial.arrange.fill	Montages images together to completely fill the available space, while preserving aspect ratio.
org.anchoranalysis.image.feature.bean.evaluator	Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
org.anchoranalysis.io.input.bean.path	Beans pertaining to manipulating and matching against file-paths.
org.anchoranalysis.io.input.bean.path.matcher	Beans to find a subset of files that match a particular conditions on their paths.
org.anchoranalysis.io.output.bean	Beans for the framework around writing files to the file-system.
org.anchoranalysis.plugin.image.bean.channel.provider	Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.slice	Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.image.bean.object.provider.morphological	Implementations of ObjectCollectionProvider involving morphological operations.
org.anchoranalysis.plugin.image.bean.segment.binary	Implementations of BinarySegmentation.
org.anchoranalysis.plugin.image.bean.stack.provider	Implementations of StackProvider.
org.anchoranalysis.plugin.image.bean.stack.provider.color	Implementations of StackProvider that color portions of an image.
org.anchoranalysis.plugin.image.feature.bean.list.permute	Implementations of FeatureListProvider that derive new features with permuted property-values.
org.anchoranalysis.plugin.image.feature.bean.object.combine	Features from combinations of ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.pair	Features from pairs of ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity	Implementations of FeatureSingleObject that measure an object's intensity on a corresponding Channel.
org.anchoranalysis.plugin.image.task.bean.segment	Tasks to segment an image.
org.anchoranalysis.plugin.io.bean.file.namer	Implementations of FileNamer.
org.anchoranalysis.plugin.opencv.bean.feature	Extracting features using OpenCV.
org.anchoranalysis.plugin.opencv.bean.stack	Implementations of StackWriter and StackReader that involve OpenCV.
org.anchoranalysis.plugin.operator.feature.bean	Features that combine or convert other features in a generic way.

Uses of BeanInstanceMap in org.anchoranalysis.bean

Methods in org.anchoranalysis.bean with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	BeanInstanceMap.addFrom(BeanInstanceMap other)	Populates the entries from another BeanInstanceMap
void	AnchorBean.checkMisconfigured(BeanInstanceMap defaultInstances)	Checks that a bean's properties conform to expectations.

Uses of BeanInstanceMap in org.anchoranalysis.bean.permute.property

Methods in org.anchoranalysis.bean.permute.property with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	SequenceInteger.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.bean.xml

Methods in org.anchoranalysis.bean.xml that return BeanInstanceMap

Modifier and Type	Method	Description
static BeanInstanceMap	RegisterBeanFactories.getDefaultInstances()	Default instances of different family-types of beans.

Uses of BeanInstanceMap in org.anchoranalysis.bean.xml.factory

Methods in org.anchoranalysis.bean.xml.factory that return BeanInstanceMap

Modifier and Type	Method	Description
BeanInstanceMap	AnchorDefaultBeanFactory.getDefaultInstances()	Default bean-classes to use for particular family types of beans.

Constructors in org.anchoranalysis.bean.xml.factory with parameters of type BeanInstanceMap

Modifier	Constructor	Description
	AnchorDefaultBeanFactory(BeanInstanceMap defaultInstances)	Creates a new AnchorDefaultBeanFactory instance.
	ReplacePropertyBeanFactory(BeanInstanceMap defaultInstances)	Creates a new ReplacePropertyBeanFactory instance.

Uses of BeanInstanceMap in org.anchoranalysis.experiment.bean.processor

Methods in org.anchoranalysis.experiment.bean.processor with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	DebugDependentProcessor.checkMisconfigured(BeanInstanceMap defaultInstances)
void	ParallelProcessor.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.experiment.task.processor

Constructors in org.anchoranalysis.experiment.task.processor with parameters of type BeanInstanceMap

Modifier	Constructor	Description
	CallableJob(Task<T,S> task, ParametersUnbound<T,S> parametersUnbound, BeanInstanceMap defaultInstances, JobStateMonitor stateMonitor, JobDescription jobDescription, JobStartStopLogger logger)	Creates a new CallableJob instance.

Uses of BeanInstanceMap in org.anchoranalysis.image.bean.displayer

Methods in org.anchoranalysis.image.bean.displayer with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	IntensityQuantiles.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.image.bean.spatial.arrange.align

Methods in org.anchoranalysis.image.bean.spatial.arrange.align with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	Align.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.image.bean.spatial.arrange.fill

Methods in org.anchoranalysis.image.bean.spatial.arrange.fill with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	Fill.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.image.feature.bean.evaluator

Methods in org.anchoranalysis.image.feature.bean.evaluator with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	FeatureEvaluator.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.io.input.bean.path

Methods in org.anchoranalysis.io.input.bean.path with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	NameElementRange.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.io.input.bean.path.matcher

Methods in org.anchoranalysis.io.input.bean.path.matcher with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	MatchRegularExpression.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.io.output.bean

Methods in org.anchoranalysis.io.output.bean with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	OutputWriteSettings.checkMisconfigured(BeanInstanceMap defaultInstances)
void	OutputWriteSettings.initialize(BeanInstanceMap defaultInstances)	This method should be called once on this object before further calling OutputWriteSettings.getWriterInstance(java.lang.Class<? extends T>).

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.bean.channel.provider

Methods in org.anchoranalysis.plugin.image.bean.channel.provider with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	FromStack.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.slice with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	ExtractSliceRange.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.bean.object.provider.morphological

Methods in org.anchoranalysis.plugin.image.bean.object.provider.morphological with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	Erode.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.bean.segment.binary

Methods in org.anchoranalysis.plugin.image.bean.segment.binary with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	Sequence.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.bean.stack.provider

Methods in org.anchoranalysis.plugin.image.bean.stack.provider with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	FromChannelOrMask.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.bean.stack.provider.color

Methods in org.anchoranalysis.plugin.image.bean.stack.provider.color with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	ThreeChannels.checkMisconfigured(BeanInstanceMap defaultInstances)
void	ThreeColoredObjects.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.feature.bean.list.permute

Methods in org.anchoranalysis.plugin.image.feature.bean.list.permute with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	PermuteFeature.checkMisconfigured(BeanInstanceMap defaultInstances)
void	PermuteFeatureSequenceInteger.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.feature.bean.object.combine

Methods in org.anchoranalysis.plugin.image.feature.bean.object.combine with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	CombineObjectsForFeatures.checkMisconfigured(BeanInstanceMap defaultInstances)	Checks if the bean is misconfigured and saves the default instances for later use.

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.feature.bean.object.pair

Methods in org.anchoranalysis.plugin.image.feature.bean.object.pair with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	Intersection.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	IntensityMeanShellBase.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.image.task.bean.segment

Methods in org.anchoranalysis.plugin.image.task.bean.segment with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	SegmentInstanceWithModel.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.io.bean.file.namer

Methods in org.anchoranalysis.plugin.io.bean.file.namer with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	LastDirectories.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.opencv.bean.feature

Methods in org.anchoranalysis.plugin.opencv.bean.feature with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	HOGFeature.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.opencv.bean.stack

Methods in org.anchoranalysis.plugin.opencv.bean.stack with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	OpenCVReader.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanInstanceMap in org.anchoranalysis.plugin.operator.feature.bean

Methods in org.anchoranalysis.plugin.operator.feature.bean with parameters of type BeanInstanceMap

Modifier and Type	Method	Description
void	FromDictionary.checkMisconfigured(BeanInstanceMap defaultInstances)