Uses of Class
org.anchoranalysis.bean.exception.BeanMisconfiguredException

Packages that use BeanMisconfiguredException

Package	Description
org.anchoranalysis.bean	Defining, loading, initializing Anchor Beans.
org.anchoranalysis.bean.initializable	Initializing beans with particular parameters, including recursively.
org.anchoranalysis.bean.permute.property	Applying permutations to the properties of a bean.
org.anchoranalysis.feature.bean	Beans pertaining to feature-calculation.
org.anchoranalysis.image.bean.displayer
org.anchoranalysis.image.bean.nonbean.spatial.align	Non-bean classes to help specify the position of one entity relative to the others.
org.anchoranalysis.image.bean.spatial.arrange.align	Aligning a BoundingBox to fit inside another BoundingBox.
org.anchoranalysis.image.bean.spatial.arrange.fill	Montages images together to completely fill the available space, while preserving aspect ratio.
org.anchoranalysis.image.feature.bean.evaluator	Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
org.anchoranalysis.io.input.bean.path	Beans pertaining to manipulating and matching against file-paths.
org.anchoranalysis.io.input.bean.path.matcher	Beans to find a subset of files that match a particular conditions on their paths.
org.anchoranalysis.io.output.bean	Beans for the framework around writing files to the file-system.
org.anchoranalysis.plugin.image.bean.channel.provider	Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.slice	Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.image.bean.object.provider.morphological	Implementations of ObjectCollectionProvider involving morphological operations.
org.anchoranalysis.plugin.image.bean.segment.binary	Implementations of BinarySegmentation.
org.anchoranalysis.plugin.image.bean.stack.provider	Implementations of StackProvider.
org.anchoranalysis.plugin.image.bean.stack.provider.color	Implementations of StackProvider that color portions of an image.
org.anchoranalysis.plugin.image.feature.bean.list.permute	Implementations of FeatureListProvider that derive new features with permuted property-values.
org.anchoranalysis.plugin.image.feature.bean.object.combine	Features from combinations of ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.pair	Features from pairs of ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity	Implementations of FeatureSingleObject that measure an object's intensity on a corresponding Channel.
org.anchoranalysis.plugin.io.bean.file.namer	Implementations of FileNamer.
org.anchoranalysis.plugin.opencv.bean.feature	Extracting features using OpenCV.
org.anchoranalysis.plugin.opencv.bean.stack	Implementations of StackWriter and StackReader that involve OpenCV.
org.anchoranalysis.plugin.operator.feature.bean	Features that combine or convert other features in a generic way.

Uses of BeanMisconfiguredException in org.anchoranalysis.bean

Methods in org.anchoranalysis.bean that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	BeanInstanceMap.addFrom(List<? extends NameValue<?>> listNamedInstances)	Populates from a list of NamedBean.
void	AnchorBean.checkMisconfigured(BeanInstanceMap defaultInstances)	Checks that a bean's properties conform to expectations.
static Optional<Object>	FieldAccessor.fieldFromBean(AnchorBean<?> bean, Field field)	Retrieves the value of a Field from a AnchorBean.
<T extends AnchorBean<?>> List<T>	AnchorBean.findFieldsOfClass(Class<?> match)	Finds all bean-fields that are instances of a certain class.
void	AnchorBean.localise(Path path)	Called once after the bean is created, localising the bean to a path on the filesystem.

Uses of BeanMisconfiguredException in org.anchoranalysis.bean.initializable

Methods in org.anchoranalysis.bean.initializable that throw BeanMisconfiguredException

Modifier and Type	Method	Description
static void	CheckMisconfigured.atLeastOne(String property1Name, String property2Name, boolean property1Defined, boolean property2Defined)	Checks that one of two properties is defined, or both.
static void	CheckMisconfigured.oneOnly(String property1Name, String property2Name, boolean property1Defined, boolean property2Defined)	Checks that one of two properties is defined, but not both simultaneously.

Uses of BeanMisconfiguredException in org.anchoranalysis.bean.permute.property

Methods in org.anchoranalysis.bean.permute.property that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	SequenceInteger.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.feature.bean

Methods in org.anchoranalysis.feature.bean that throw BeanMisconfiguredException

Modifier and Type	Method	Description
final FeatureList<FeatureInput>	Feature.createListChildFeatures()	Returns a list of Features that exist as bean-properties of this feature, either directly or in lists.

Uses of BeanMisconfiguredException in org.anchoranalysis.image.bean.displayer

Methods in org.anchoranalysis.image.bean.displayer that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	IntensityQuantiles.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.image.bean.nonbean.spatial.align

Methods in org.anchoranalysis.image.bean.nonbean.spatial.align that throw BeanMisconfiguredException

Modifier and Type	Method	Description
AlignmentOnDimension	PositionChoices.alignmentForDimension(String fieldName, String fieldValue)	Calculates how to align a particular axis.
static AlignmentOnDimension	PositionChoicesConstants.alignX(String fieldValue)	How to align on the X-axis.
static AlignmentOnDimension	PositionChoicesConstants.alignY(String fieldValue)	How to align on the Y-axis.
static AlignmentOnDimension	PositionChoicesConstants.alignZ(String fieldValue)	How to align on the Z-axis.

Uses of BeanMisconfiguredException in org.anchoranalysis.image.bean.spatial.arrange.align

Methods in org.anchoranalysis.image.bean.spatial.arrange.align that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	Align.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.image.bean.spatial.arrange.fill

Methods in org.anchoranalysis.image.bean.spatial.arrange.fill that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	Fill.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.image.feature.bean.evaluator

Methods in org.anchoranalysis.image.feature.bean.evaluator that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	FeatureEvaluator.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.io.input.bean.path

Methods in org.anchoranalysis.io.input.bean.path that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	NameElementRange.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.io.input.bean.path.matcher

Methods in org.anchoranalysis.io.input.bean.path.matcher that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	MatchRegularExpression.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.io.output.bean

Methods in org.anchoranalysis.io.output.bean that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	OutputWriteSettings.checkMisconfigured(BeanInstanceMap defaultInstances)
void	OutputWriteSettings.initialize(BeanInstanceMap defaultInstances)	This method should be called once on this object before further calling OutputWriteSettings.getWriterInstance(java.lang.Class<? extends T>).

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.bean.channel.provider

Methods in org.anchoranalysis.plugin.image.bean.channel.provider that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	FromStack.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.slice that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	ExtractSliceRange.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.bean.object.provider.morphological

Methods in org.anchoranalysis.plugin.image.bean.object.provider.morphological that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	Erode.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.bean.segment.binary

Methods in org.anchoranalysis.plugin.image.bean.segment.binary that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	Sequence.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.bean.stack.provider

Methods in org.anchoranalysis.plugin.image.bean.stack.provider that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	FromChannelOrMask.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.bean.stack.provider.color

Methods in org.anchoranalysis.plugin.image.bean.stack.provider.color that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	ThreeChannels.checkMisconfigured(BeanInstanceMap defaultInstances)
void	ThreeColoredObjects.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.feature.bean.list.permute

Methods in org.anchoranalysis.plugin.image.feature.bean.list.permute that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	PermuteFeature.checkMisconfigured(BeanInstanceMap defaultInstances)
void	PermuteFeatureSequenceInteger.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.feature.bean.object.combine

Methods in org.anchoranalysis.plugin.image.feature.bean.object.combine that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	CombineObjectsForFeatures.checkMisconfigured(BeanInstanceMap defaultInstances)	Checks if the bean is misconfigured and saves the default instances for later use.

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.feature.bean.object.pair

Methods in org.anchoranalysis.plugin.image.feature.bean.object.pair that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	Intersection.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	IntensityMeanShellBase.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.io.bean.file.namer

Methods in org.anchoranalysis.plugin.io.bean.file.namer that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	LastDirectories.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.opencv.bean.feature

Methods in org.anchoranalysis.plugin.opencv.bean.feature that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	HOGFeature.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.opencv.bean.stack

Methods in org.anchoranalysis.plugin.opencv.bean.stack that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	OpenCVReader.checkMisconfigured(BeanInstanceMap defaultInstances)

Uses of BeanMisconfiguredException in org.anchoranalysis.plugin.operator.feature.bean

Methods in org.anchoranalysis.plugin.operator.feature.bean that throw BeanMisconfiguredException

Modifier and Type	Method	Description
void	FromDictionary.checkMisconfigured(BeanInstanceMap defaultInstances)