Uses of Package
org.anchoranalysis.image.core.dimensions
Packages that use org.anchoranalysis.image.core.dimensions
Package
Description
A pairing of objects from two collections (bipartite matching).
What to compare an annotation (ground truth) against?
Annotations that use one or more marks to describe entities in an image.
A particular stack used in feature-calculations called a
EnergyStack together with related classes.Base classes providing inputs to feature calculations.
Base classes for performing operations on
Channels.Non-bean classes relating to image-segmentation.
Beans pertaining to
ObjectMask and their
collections.Beans to define entities or operate that consider Euclidian space.
Converting quantities of distance between units.
Converting quantities of extent (area or volume) between units.
Converting quantities of area between units.
Converting quantities of volume between units.
The
Channel core data-class and related operations
and converters.Factory classes for creating
Channel for various
voxel data-types.Classes to describe the size of images or components of images both in voxels and physically.
An image with only two permissible states.
Defines the key data object,
Stack, and related
classes.A collection of
Stacks, each with a unique identifier
as a name.Features that convert to/from physical spatial units (e.g. meters) as opposed to pixels/voxels.
Image-related implementations of
FeatureInput.Inference of machine learning models on images.
Non-bean classes for reading a
Channel from the
filesystem.Non-bean classes for a mapping of names to
Channels.Writing an
ObjectCollection to the filesystem as a
single-channeled stack.Writing an
ObjectCollection to the filesystem as
multiple binary singled-channeled images.Writing an
ObjectCollection to the filesystem as
RGB raster-images.Non-bean classes for reading / writing a
Stack from
and to the filesystem.Non-bean classes for reading a
Stack from the
filesystem.Non-bean classes for filesystem I/O using Bioformats.
Converts the byte stream opened by Bioformats into channels of particular data-type.
Converts the byte stream opened by Bioformats into channels of
ByteBuffer.Converts the byte stream opened by Bioformats into channels of
FloatBuffer.Converts the byte stream opened by Bioformats into channels of
IntBuffer.Converts the byte stream opened by Bioformats into channels of
ShortBuffer.Reading metadata information from files using EXIF and/or other metadata headers.
Converts to and from ImageJ data-structures for images.
Lower and upper limits set around variables.
Bounds on how to rotate an entity in Euclidean space.
Beans generally related to
Marks.Operations based on sets of points.
Fitting structures to sets of points.
Proposing
Marks or other data-structures with particular
attributes.Criteria for adding edges during optimization of marked-point-processes.
Features calculated on a
Mark.Features calculated on a
org.anchoranalysis.mpp.feature.bean.mark.collection.Non-bean classes related to
Marks.Marks implementing conic sections.Marks implementing structures based on points.Non-bean classes for proposing
Marks or other data-structures
with particular attributes.Overlays and related classes involving drawing entities on top
of an image.Collections of
Overlays.An implementation of an
Overlay that draws an ObjectMask on an image.Comparing the similarity of annotations from two images to each other.
Pairs annotations from two different sets, creating an assignment of some type.
Euclidean Distance Transform
implementations via FIJI.
Filters that perform blurring.
Implementations of
ConvertChannelTo and ConvertChannelToWithHistogram.Implementations of
ChannelProvider that are
generic base-classes or otherwise abstract or general.Implementations of
ChannelProvider that process 3D
channels slice-by-slice.Implementations of
DimensionsProvider.Implementations of
MaskProvider.Implementations of
MaskProvider that convert
providers of other types to ObjectMasks.Implementations of
MaskProvider that implement
morphological operations.Implementations of
ObjectFilter.Implementations of
ObjectFilter that assess each
element in a collection collectively.Implementations of
ObjectFilter that combine two or
more other ObjectFilters.Implementations of
ObjectFilter that
independently assess each element in a collection.Implementations of
ObjectCollectionProvider.Implementations of
ObjectCollectionProvider that
filter objects.Implementations of
ObjectCollectionProvider
involving merging objects together.Implementations of
ScaleCalculator for calculating
a scaling-factor from dimensions.Implementations of
StackProvider that color
portions of an image.Non-beans for operations or calculations relating to
Channels.Features that are calculated from
Dimensions.Beans involving physical units for measurement.
Non-beans pertaining to
ObjectMasks.Merging
ObjectMasks.Conditions for merging
ObjectMasks.Implementations of
StackReader.Non-bean classes to help use multiple files to represent a single
Stack.Reading and writing metadata XML.
Implementations of
StackProvider involving
Mark or related classes.Fitting geometric structures to points.
CalculationPart related to fitting
ellipsoids to points by least-squares.Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
Fixtures for creating object-masks.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.annotation.mark
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.feature.energyClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.feature.inputClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.Converts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.bean.channel
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.bean.object
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.bean.spatial
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.bean.unitvalue.distanceClassDescriptionConverts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.bean.unitvalue.extentClassDescriptionConverts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.bean.unitvalue.extent.areaClassDescriptionConverts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.bean.unitvalue.extent.volumeClassDescriptionConverts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.core.channelClassDescriptionThe size of an image (in voxels), together with the image resolution.When an image has incompatible image-size with expectations.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.core.channel.factoryClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.core.dimensionsClassDescriptionThe size of an image (in voxels), together with the image resolution.Changes orientation of an image in the XY plane.The resolution of an image.Suffix that describes a particular quantity of units (micron, nano, square microns etc.)Converts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.core.maskClassDescriptionThe size of an image (in voxels), together with the image resolution.When an image has incompatible image-size with expectations.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.core.stackClassDescriptionThe size of an image (in voxels), together with the image resolution.When an image has incompatible image-size with expectations.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.feature.bean.physicalClassDescriptionThe resolution of an image.Suffix that describes a particular quantity of units (micron, nano, square microns etc.)Converts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.feature.inputClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.inference
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.io.channel.map
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.io.stack
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.image.io.stack.input
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.io.bioformats
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.io.bioformats.copyconvertClassDescriptionThe size of an image (in voxels), together with the image resolution.Changes orientation of an image in the XY plane.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.io.bioformats.copyconvert.tofloatClassDescriptionThe size of an image (in voxels), together with the image resolution.Changes orientation of an image in the XY plane.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.io.imagej.convert
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.bean.bound
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.bean.mark
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.bean.points
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.bean.proposerClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.feature.bean.markClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.feature.bean.mark.collectionClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.mark
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.mark.conicClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.mark.points
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.overlay
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.mpp.proposer
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.overlay
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.overlay.collection
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.overlay.object
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.fiji.bean.channel.provider.distanceClassDescriptionThe size of an image (in voxels), together with the image resolution.The resolution of an image.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.image.bean.object.provider.mergeClassDescriptionThe resolution of an image.Converts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.image.channel
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.image.object
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.image.object.mergeClassDescriptionConverts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.image.object.merge.conditionClassDescriptionConverts from voxelized units to different physical measurements of area / volume / distance.
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.io.multifile
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.plugin.io.xml
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.test.image
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Classes in org.anchoranalysis.image.core.dimensions used by org.anchoranalysis.test.image.object