Uses of Class
org.anchoranalysis.image.core.dimensions.Dimensions

Packages that use Dimensions

Package	Description
org.anchoranalysis.annotation.io.assignment	A pairing of objects from two collections (bipartite matching).
org.anchoranalysis.annotation.io.bean.comparer	What to compare an annotation (ground truth) against?
org.anchoranalysis.annotation.mark	Annotations that use one or more marks to describe entities in an image.
org.anchoranalysis.feature.energy	A particular stack used in feature-calculations called a EnergyStack together with related classes.
org.anchoranalysis.feature.input	Base classes providing inputs to feature calculations.
org.anchoranalysis.image.bean.channel	Base classes for performing operations on Channels.
org.anchoranalysis.image.bean.object	Beans pertaining to ObjectMask and their collections.
org.anchoranalysis.image.bean.spatial	Beans to define entities or operate that consider Euclidian space.
org.anchoranalysis.image.core.channel	The Channel core data-class and related operations and converters.
org.anchoranalysis.image.core.channel.factory	Factory classes for creating Channel for various voxel data-types.
org.anchoranalysis.image.core.dimensions	Classes to describe the size of images or components of images both in voxels and physically.
org.anchoranalysis.image.core.mask	An image with only two permissible states.
org.anchoranalysis.image.core.stack	Defines the key data object, Stack, and related classes.
org.anchoranalysis.image.core.stack.named	A collection of Stacks, each with a unique identifier as a name.
org.anchoranalysis.image.feature.input	Image-related implementations of FeatureInput.
org.anchoranalysis.image.inference	Inference of machine learning models on images.
org.anchoranalysis.image.io.channel.input	Non-bean classes for reading a Channel from the filesystem.
org.anchoranalysis.image.io.channel.map	Non-bean classes for a mapping of names to Channels.
org.anchoranalysis.image.io.object.output.grayscale	Writing an ObjectCollection to the filesystem as a single-channeled stack.
org.anchoranalysis.image.io.object.output.rgb	Writing an ObjectCollection to the filesystem as RGB raster-images.
org.anchoranalysis.image.io.stack.input	Non-bean classes for reading a Stack from the filesystem.
org.anchoranalysis.io.bioformats	Non-bean classes for filesystem I/O using Bioformats.
org.anchoranalysis.io.bioformats.copyconvert	Converts the byte stream opened by Bioformats into channels of particular data-type.
org.anchoranalysis.io.bioformats.copyconvert.tofloat	Converts the byte stream opened by Bioformats into channels of FloatBuffer.
org.anchoranalysis.mpp.bean.mark	Beans generally related to Marks.
org.anchoranalysis.mpp.bean.points	Operations based on sets of points.
org.anchoranalysis.mpp.bean.points.fitter	Fitting structures to sets of points.
org.anchoranalysis.mpp.bean.proposer	Proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.mpp.feature.addcriteria	Criteria for adding edges during optimization of marked-point-processes.
org.anchoranalysis.mpp.feature.bean.mark	Features calculated on a Mark.
org.anchoranalysis.mpp.feature.bean.mark.collection	Features calculated on a org.anchoranalysis.mpp.feature.bean.mark.collection.
org.anchoranalysis.mpp.mark	Non-bean classes related to Marks.
org.anchoranalysis.mpp.mark.conic	Marks implementing conic sections.
org.anchoranalysis.mpp.mark.points	Marks implementing structures based on points.
org.anchoranalysis.mpp.overlay	Any Overlay related to a Mark.
org.anchoranalysis.mpp.proposer	Non-bean classes for proposing Marks or other data-structures with particular attributes.
org.anchoranalysis.overlay	Overlays and related classes involving drawing entities on top of an image.
org.anchoranalysis.overlay.collection	Collections of Overlays.
org.anchoranalysis.overlay.object	An implementation of an Overlay that draws an ObjectMask on an image.
org.anchoranalysis.plugin.annotation.bean.comparer	Comparing the similarity of annotations from two images to each other.
org.anchoranalysis.plugin.annotation.bean.comparison.assigner	Pairs annotations from two different sets, creating an assignment of some type.
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance	Euclidean Distance Transform implementations via FIJI.
org.anchoranalysis.plugin.image.bean.blur	Filters that perform blurring.
org.anchoranalysis.plugin.image.bean.channel.aggregator	Implementations of ConvertChannelTo and ConvertChannelToWithHistogram.
org.anchoranalysis.plugin.image.bean.channel.provider	Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.slice	Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.image.bean.dimensions.provider	Implementations of DimensionsProvider.
org.anchoranalysis.plugin.image.bean.mask.provider	Implementations of MaskProvider.
org.anchoranalysis.plugin.image.bean.mask.provider.convert	Implementations of MaskProvider that convert providers of other types to ObjectMasks.
org.anchoranalysis.plugin.image.bean.mask.provider.morphological	Implementations of MaskProvider that implement morphological operations.
org.anchoranalysis.plugin.image.bean.object.filter	Implementations of ObjectFilter.
org.anchoranalysis.plugin.image.bean.object.filter.collective	Implementations of ObjectFilter that assess each element in a collection collectively.
org.anchoranalysis.plugin.image.bean.object.filter.combine	Implementations of ObjectFilter that combine two or more other ObjectFilters.
org.anchoranalysis.plugin.image.bean.object.filter.independent	Implementations of ObjectFilter that independently assess each element in a collection.
org.anchoranalysis.plugin.image.bean.object.provider	Implementations of ObjectCollectionProvider.
org.anchoranalysis.plugin.image.bean.object.provider.filter	Implementations of ObjectCollectionProvider that filter objects.
org.anchoranalysis.plugin.image.bean.scale	Implementations of ScaleCalculator for calculating a scaling-factor from dimensions.
org.anchoranalysis.plugin.image.bean.stack.provider.color	Implementations of StackProvider that color portions of an image.
org.anchoranalysis.plugin.image.channel	Non-beans for operations or calculations relating to Channels.
org.anchoranalysis.plugin.image.feature.bean.dimensions	Features that are calculated from Dimensions.
org.anchoranalysis.plugin.image.object	Non-beans pertaining to ObjectMasks.
org.anchoranalysis.plugin.io.multifile	Non-bean classes to help use multiple files to represent a single Stack.
org.anchoranalysis.plugin.mpp.bean.stack.provider	Implementations of StackProvider involving Mark or related classes.
org.anchoranalysis.plugin.points.bean.fitter	Fitting geometric structures to points.
org.anchoranalysis.plugin.points.calculate.ellipsoid	CalculationPart related to fitting ellipsoids to points by least-squares.
org.anchoranalysis.test.image.object	Fixtures for creating object-masks.

Uses of Dimensions in org.anchoranalysis.annotation.io.assignment

Methods in org.anchoranalysis.annotation.io.assignment with parameters of type Dimensions

Modifier and Type	Method	Description
OverlappingObjects	AssignOverlappingObjects.createAssignment(ObjectCollection left, ObjectCollection right, double maxAcceptedCost, Dimensions dimensions)	Creates an assignment from the objects in left to those in right.

Uses of Dimensions in org.anchoranalysis.annotation.io.bean.comparer

Methods in org.anchoranalysis.annotation.io.bean.comparer with parameters of type Dimensions

Modifier and Type	Method	Description
abstract Findable<ObjectCollection>	ComparableSource.loadAsObjects(Path reference, Dimensions dimensions, boolean debugMode, OperationContext context)	Loads the source of elements from the file-system and converts to a ObjectCollection.

Uses of Dimensions in org.anchoranalysis.annotation.mark

Methods in org.anchoranalysis.annotation.mark with parameters of type Dimensions

Modifier and Type	Method	Description
default ObjectCollection	AnnotationWithMarks.convertToObjects(Dimensions dimensions)	Creates an object-collection that is a voxelized representation of the marks in the annotation.

Uses of Dimensions in org.anchoranalysis.feature.energy

Methods in org.anchoranalysis.feature.energy that return Dimensions

Modifier and Type	Method	Description
Dimensions	EnergyStack.dimensions()	The image-dimensions associated with the energy-stack.
Dimensions	EnergyStackWithoutParameters.dimensions()	The dimensions of all channels in the stack.

Constructors in org.anchoranalysis.feature.energy with parameters of type Dimensions

Modifier	Constructor	Description
	EnergyStack(Dimensions dimensions)	Create a new stack of Dimensions with zero-voxel values, without any additional parameters.
	EnergyStackWithoutParameters(Dimensions dimensions)	Create a energy-stack with no channels - but with associated dimensions.

Uses of Dimensions in org.anchoranalysis.feature.input

Methods in org.anchoranalysis.feature.input that return Dimensions

Modifier and Type	Method	Description
abstract Dimensions	FeatureInputDimensions.dimensions()	The dimensions of the associated image.
Dimensions	FeatureInputEnergy.dimensions()
Dimensions	FeatureInputEnergy.dimensionsRequired()	The image-dimensions associated with the energy-stack, or an exception if no energy-stack exists.

Methods in org.anchoranalysis.feature.input that return types with arguments of type Dimensions

Modifier and Type	Method	Description
Optional<Dimensions>	FeatureInputEnergy.dimensionsOptional()	The image-dimensions associated with the energy-stack, if it exists.

Uses of Dimensions in org.anchoranalysis.image.bean.channel

Methods in org.anchoranalysis.image.bean.channel that return Dimensions

Modifier and Type	Method	Description
protected Dimensions	ChannelAggregator.maybeDropResolution(Dimensions dimensions)	Removes the Resolution component in Dimensions.

Methods in org.anchoranalysis.image.bean.channel that return types with arguments of type Dimensions

Modifier and Type	Method	Description
protected abstract Optional<Dimensions>	ChannelAggregator.existingDimensions()	The Dimensions to use for the aggregation.

Methods in org.anchoranalysis.image.bean.channel with parameters of type Dimensions

Modifier and Type	Method	Description
protected Dimensions	ChannelAggregator.maybeDropResolution(Dimensions dimensions)	Removes the Resolution component in Dimensions.

Uses of Dimensions in org.anchoranalysis.image.bean.object

Method parameters in org.anchoranalysis.image.bean.object with type arguments of type Dimensions

Modifier and Type	Method	Description
abstract ObjectCollection	ObjectFilter.filter(ObjectCollection objectsToFilter, Optional<Dimensions> dimensions)	Filters an ObjectCollection to remove objects.

Uses of Dimensions in org.anchoranalysis.image.bean.spatial

Method parameters in org.anchoranalysis.image.bean.spatial with type arguments of type Dimensions

Modifier and Type	Method	Description
abstract ScaleFactor	ScaleCalculator.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)	Calculates a scaling-factor for a source image/entity of particular dimensions.

Uses of Dimensions in org.anchoranalysis.image.core.channel

Methods in org.anchoranalysis.image.core.channel that return Dimensions

Modifier and Type	Method	Description
Dimensions	Channel.dimensions()	The size and voxel-resolution of the channel.

Uses of Dimensions in org.anchoranalysis.image.core.channel.factory

Methods in org.anchoranalysis.image.core.channel.factory with parameters of type Dimensions

Modifier and Type	Method	Description
Channel	ChannelFactory.create(Dimensions dimensions, VoxelDataType channelDataType)	Creates an empty initialized channel for a particular data-type.
Channel	ChannelFactorySingleType.createEmptyInitialised(Dimensions dimensions)	Create a Channel initialized with zero-valued voxel-buffers.
Channel	ChannelFactory.createEmptyInitialisedToSupportMaxValue(Dimensions dimensions, long maxIntensityValueNeeded)	Creates an empty initialized channel with discrete type with as minimal as needed data-type to support a maximum value.
Channel	ChannelFactorySingleType.createEmptyUninitialised(Dimensions dimensions)	Create a Channel without initialization with voxel-buffers.
Channel	ChannelFactory.createUninitialised(Dimensions dimensions, VoxelDataType channelDataType)	Create a Channel without initialization with voxel-buffers.

Uses of Dimensions in org.anchoranalysis.image.core.dimensions

Methods in org.anchoranalysis.image.core.dimensions that return Dimensions

Modifier and Type	Method	Description
Dimensions	OrientationChange.dimensions(Dimensions dimensions)	A Dimensions that describes {code dimensions} after the orientation change.
Dimensions	Dimensions.duplicateChangeExtent(Extent extentToAssign)	Deep-copies the current object, but assigns a different Extent.
Dimensions	Dimensions.duplicateChangeResolution(Optional<Resolution> resolutionToAssign)	Deep-copies the current object, but assigns a different Resolution.
Dimensions	Dimensions.duplicateChangeZ(int z)	Deep-copies the current object, but assigns a different size for the Z-dimension.
Dimensions	Dimensions.resizeXY(int x, int y)	Resizes the dimensions to have new sizes in the X and Y dimension.
Dimensions	Dimensions.scaleXYBy(ScaleFactor scaleFactor)	Scales the X- and Y- dimensions by a scaling-factor.

Methods in org.anchoranalysis.image.core.dimensions with parameters of type Dimensions

Modifier and Type	Method	Description
Dimensions	OrientationChange.dimensions(Dimensions dimensions)	A Dimensions that describes {code dimensions} after the orientation change.
boolean	Dimensions.equals(Dimensions other, boolean compareResolution)	Checks equality between this object and another Dimensions, but possibly skipping a comparison of image-resolution in the check.

Uses of Dimensions in org.anchoranalysis.image.core.mask

Methods in org.anchoranalysis.image.core.mask that return Dimensions

Modifier and Type	Method	Description
Dimensions	Mask.dimensions()	The size and voxel-resolution of the channel.

Methods in org.anchoranalysis.image.core.mask with parameters of type Dimensions

Modifier and Type	Method	Description
static Mask	MaskFromObjects.createFromNotObjects(ObjectCollection objects, Dimensions dimensions, BinaryValuesInt outValues)	Create a Mask corresponding to all off voxels in an ObjectCollection.
static Mask	MaskFromObjects.createFromObjects(ObjectCollection objects, Dimensions dimensions, BinaryValuesInt outValues)	Create a Mask corresponding to all on voxels in an ObjectCollection.
static Mask	MaskFactory.createMaskOff(Dimensions dimensions)	Creates a binary-mask for specific dimensions with all voxels set to off.
static Mask	MaskFactory.createMaskOff(Dimensions dimensions, BinaryValuesInt binaryValues)	Creates a binary-mask for specific dimensions with all voxels set to off.
static Mask	MaskFactory.createMaskOn(Dimensions dimensions)	Creates a binary-mask for specific dimensions with all voxels set to on.
static Mask	MaskFactory.createMaskOn(Dimensions dimensions, BinaryValuesInt binaryValues)	Creates a binary-mask for specific dimensions with all voxels set to on.

Constructors in org.anchoranalysis.image.core.mask with parameters of type Dimensions

Modifier	Constructor	Description
	Mask(Dimensions dimensions, BinaryValuesInt binaryValues)	Creates a new empty mask of particular dimensions and with particular BinaryValuesInt.

Uses of Dimensions in org.anchoranalysis.image.core.stack

Methods in org.anchoranalysis.image.core.stack that return Dimensions

Modifier and Type	Method	Description
Dimensions	DisplayStack.dimensions()	The dimensions of all channels in the stack.
Dimensions	RGBStack.dimensions()	The dimensions of all channels in the stack.
Dimensions	Stack.dimensions()	The dimensions of all channels in the stack.
Dimensions	ImageMetadata.getDimensions()	The dimensions of the image.

Constructors in org.anchoranalysis.image.core.stack with parameters of type Dimensions

Modifier	Constructor	Description
	ImageMetadata(Dimensions dimensions, int numberChannels, int numberFrames, int numberSeries, boolean rgb, int bitDepthPerChannel, ImageFileAttributes fileAttributes, Optional<ZonedDateTime> acquisitionTime, Optional<ImagePyramidMetadata> pyramid)	Creates a new ImageMetadata instance.
	RGBStack(Dimensions dimensions, ChannelFactorySingleType factory)	Creates a particularly-sized stack with all channels initialized to 0.
	Stack(Dimensions dimensions, ChannelFactorySingleType factory, int numberChannels, boolean rgb)	Create with a particular number of empty Channels.

Uses of Dimensions in org.anchoranalysis.image.core.stack.named

Method parameters in org.anchoranalysis.image.core.stack.named with type arguments of type Dimensions

Modifier and Type	Method	Description
NamedStacks	NamedStacks.applyOperation(UnaryOperator<Stack> operation, Optional<Dimensions> dimensions)	Applies an operation on each Stack in the collection and returns a new derived collection.

Uses of Dimensions in org.anchoranalysis.image.feature.input

Methods in org.anchoranalysis.image.feature.input that return Dimensions

Modifier and Type	Method	Description
Dimensions	FeatureInputImageMetadata.dimensions()

Uses of Dimensions in org.anchoranalysis.image.inference

Methods in org.anchoranalysis.image.inference that return types with arguments of type Dimensions

Modifier and Type	Method	Description
DualScale<Dimensions>	ImageInferenceContext.getDimensions()	The size of the image for which we wish to segment, before and after any scaling for model inference.

Constructor parameters in org.anchoranalysis.image.inference with type arguments of type Dimensions

Modifier	Constructor	Description
	ImageInferenceContext(DualScale<Dimensions> dimensions, ScaleFactor scaleFactor, Optional<List<String>> classLabels, VoxelsResizer resizer, ExecutionTimeRecorder executionTimeRecorder, Logger logger)	Creates a new ImageInferenceContext instance.

Uses of Dimensions in org.anchoranalysis.image.io.channel.input

Methods in org.anchoranalysis.image.io.channel.input that return Dimensions

Modifier and Type	Method	Description
abstract Dimensions	NamedChannelsInput.dimensions(int seriesIndex, Logger logger)	Dimensions of a particular series.

Uses of Dimensions in org.anchoranalysis.image.io.channel.map

Methods in org.anchoranalysis.image.io.channel.map that return Dimensions

Modifier and Type	Method	Description
Dimensions	NamedChannelsConcatenate.dimensions(Logger logger)
Dimensions	NamedChannelsMap.dimensions(Logger logger)	The dimensions of each Channel.
Dimensions	OpenedNamedChannels.dimensions(Logger logger)

Uses of Dimensions in org.anchoranalysis.image.io.object.output.grayscale

Methods in org.anchoranalysis.image.io.object.output.grayscale that return Dimensions

Modifier and Type	Method	Description
Dimensions	ObjectsAsGrayscaleGenerator.dimensions()	The dimensions associated with the objects (assumed to be constant across any change in element).

Constructors in org.anchoranalysis.image.io.object.output.grayscale with parameters of type Dimensions

Modifier	Constructor	Description
protected	ObjectsAsGrayscaleGenerator(Dimensions dimensions)	Creates a new ObjectsAsGrayscaleGenerator instance.
	ObjectsAsUniqueValueGenerator(Dimensions dimensions)	Create with a particular dimensions.
	ObjectsMergedAsMaskGenerator(Dimensions dimensions)	Create with particular size for the mask image.

Uses of Dimensions in org.anchoranalysis.image.io.object.output.rgb

Methods in org.anchoranalysis.image.io.object.output.rgb that return types with arguments of type Dimensions

Modifier and Type	Method	Description
io.vavr.control.Either<Dimensions,DisplayStack>	ObjectsAsRGBGenerator.getBackground()	A background image or dimensions to define an empty background.

Methods in org.anchoranalysis.image.io.object.output.rgb with parameters of type Dimensions

Modifier and Type	Method	Description
protected static RGBStack	ObjectsAsRGBGenerator.createEmptyStackFor(Dimensions dimensions)	Creates an empty RGBStack.

Method parameters in org.anchoranalysis.image.io.object.output.rgb with type arguments of type Dimensions

Modifier and Type	Method	Description
protected RGBStack	DrawCroppedObjectsGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)
protected RGBStack	DrawObjectsGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)
protected abstract RGBStack	ObjectsAsRGBGenerator.generateBackgroundRegion(ObjectCollectionWithProperties objects, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a RGBStack containing the background, without objects being drawn upon it.
static DrawObjectsGenerator	DrawObjectsGenerator.outlineVariedColors(int numberColors, int outlineWidth, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a generator that draws an outline around objects on a background using varied colors for the objects.
void	ObjectsAsRGBGenerator.setBackground(io.vavr.control.Either<Dimensions,DisplayStack> background)	A background image or dimensions to define an empty background.

Constructor parameters in org.anchoranalysis.image.io.object.output.rgb with type arguments of type Dimensions

Modifier	Constructor	Description
	ObjectsAsRGBGenerator(DrawObject drawObject, ObjectDrawAttributes attributes, io.vavr.control.Either<Dimensions,DisplayStack> background)	Creates a new ObjectsAsRGBGenerator instance.

Uses of Dimensions in org.anchoranalysis.image.io.stack.input

Methods in org.anchoranalysis.image.io.stack.input that return Dimensions

Modifier and Type	Method	Description
Dimensions	OpenedImageFile.dimensionsForSeries(int seriesIndex, Logger logger)	The Dimensions associated with a particular series.

Uses of Dimensions in org.anchoranalysis.io.bioformats

Methods in org.anchoranalysis.io.bioformats that return Dimensions

Modifier and Type	Method	Description
Dimensions	DimensionsCreator.apply(loci.formats.IFormatReader reader, ReadOptions readOptions, int seriesIndex)	Infers the dimensions from an image file.

Uses of Dimensions in org.anchoranalysis.io.bioformats.copyconvert

Methods in org.anchoranalysis.io.bioformats.copyconvert that return Dimensions

Modifier and Type	Method	Description
Dimensions	ImageFileShape.getImageDimensions()

Methods in org.anchoranalysis.io.bioformats.copyconvert with parameters of type Dimensions

Modifier and Type	Method	Description
void	ConvertTo.copyAllChannels(Dimensions dimensions, ByteBuffer source, DestinationChannelForIndex destination, int z, ImageFileEncoding sourceImageEncoding, OrientationChange orientationCorrection)	Copies the channels in the source buffer into a particular DestinationChannelForIndex.
protected void	ConvertTo.setupBefore(Dimensions dimensions, ImageFileEncoding sourceImageEncoding)	Always called before any batch of calls to ConvertTo.convertSliceOfSingleChannel(java.nio.ByteBuffer, int, org.anchoranalysis.image.core.dimensions.OrientationChange).

Constructors in org.anchoranalysis.io.bioformats.copyconvert with parameters of type Dimensions

Modifier	Constructor	Description
	ImageFileShape(Dimensions imageDimensions, int numberChannels, int numberFrames)

Uses of Dimensions in org.anchoranalysis.io.bioformats.copyconvert.tofloat

Methods in org.anchoranalysis.io.bioformats.copyconvert.tofloat with parameters of type Dimensions

Modifier and Type	Method	Description
protected void	FloatFromUnsignedByte.setupBefore(Dimensions dimensions, ImageFileEncoding encoding)

Uses of Dimensions in org.anchoranalysis.mpp.bean.mark

Methods in org.anchoranalysis.mpp.bean.mark with parameters of type Dimensions

Modifier and Type	Method	Description
abstract VoxelStatistics	MarkRegion.createStatisticsFor(VoxelizedMarkMemo memo, Dimensions dimensions)	Creates voxel statistics for the mark region based on the given memo and dimensions.

Uses of Dimensions in org.anchoranalysis.mpp.bean.points

Methods in org.anchoranalysis.mpp.bean.points with parameters of type Dimensions

Modifier and Type	Method	Description
Optional<Mark>	CreateMarkFromPoints.fitMarkToPointsFromMarks(MarkCollection marks, Dimensions dimensions)	Extracts points from marks, creates a new mark, and fits this mark to the extracted points.

Uses of Dimensions in org.anchoranalysis.mpp.bean.points.fitter

Methods in org.anchoranalysis.mpp.bean.points.fitter with parameters of type Dimensions

Modifier and Type	Method	Description
abstract void	PointsFitter.fit(List<Point3f> points, Mark mark, Dimensions dimensions)	Fits a mark to a set of points within given dimensions.

Uses of Dimensions in org.anchoranalysis.mpp.bean.proposer

Methods in org.anchoranalysis.mpp.bean.proposer with parameters of type Dimensions

Modifier and Type	Method	Description
abstract Optional<Orientation>	OrientationProposer.propose(Mark mark, Dimensions dimensions, RandomNumberGenerator randomNumberGenerator)	Proposes an orientation for a given mark.
abstract Optional<List<Point3i>>	PointsProposer.propose(Point3d point, Mark mark, Dimensions dimensions, RandomNumberGenerator randomNumberGenerator, ErrorNode errorNode)	Proposes a list of points based on the given parameters.
abstract Optional<Point3d>	RadiiProposer.propose(Point3d position, RandomNumberGenerator randomNumberGenerator, Dimensions dimensions, Orientation orientation)	Proposes a new point representing radii based on the given parameters.

Uses of Dimensions in org.anchoranalysis.mpp.feature.addcriteria

Methods in org.anchoranalysis.mpp.feature.addcriteria with parameters of type Dimensions

Modifier and Type	Method	Description
boolean	AddCriteriaOr.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)
abstract boolean	AddCriteriaPair.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)	Determines whether to include a pair of marks based on specific criteria.
boolean	ArbitraryPointCommon.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)
boolean	BoundingBoxIntersection.includeMarks(VoxelizedMarkMemo mark1, VoxelizedMarkMemo mark2, Dimensions dimensions, Optional<FeatureCalculatorMulti<FeatureInputPairMemo>> session, boolean do3D)

Uses of Dimensions in org.anchoranalysis.mpp.feature.bean.mark

Methods in org.anchoranalysis.mpp.feature.bean.mark that return Dimensions

Modifier and Type	Method	Description
Dimensions	FeatureInputMark.getDimensionsRequired()	Gets the dimensions associated with this feature input, throwing an exception if not present.

Methods in org.anchoranalysis.mpp.feature.bean.mark that return types with arguments of type Dimensions

Modifier and Type	Method	Description
Optional<Dimensions>	FeatureInputMark.getDimensionsOptional()	Gets the optional dimensions associated with this feature input.

Constructors in org.anchoranalysis.mpp.feature.bean.mark with parameters of type Dimensions

Modifier	Constructor	Description
	FeatureInputMark(Mark mark, Dimensions dimensions, Dictionary dictionary)	Constructs a new instance with a mark, dimensions, and dictionary.

Constructor parameters in org.anchoranalysis.mpp.feature.bean.mark with type arguments of type Dimensions

Modifier	Constructor	Description
	FeatureInputMark(Mark mark, Optional<Dimensions> dimensions)	Constructs a new instance with a mark and optional dimensions.
	FeatureInputMark(Mark mark, Optional<Dimensions> dimensions, Optional<Dictionary> dictionary)	Creates a new FeatureInputMark instance.

Uses of Dimensions in org.anchoranalysis.mpp.feature.bean.mark.collection

Methods in org.anchoranalysis.mpp.feature.bean.mark.collection that return types with arguments of type Dimensions

Modifier and Type	Method	Description
Optional<Dimensions>	FeatureInputMarkCollection.dimensions()	Gets the optional dimensions associated with the mark collection.

Constructor parameters in org.anchoranalysis.mpp.feature.bean.mark.collection with type arguments of type Dimensions

Modifier	Constructor	Description
	FeatureInputMarkCollection(MarkCollection marks, Optional<Dimensions> dimensions)	Creates a new FeatureInputMarkCollection instance.

Uses of Dimensions in org.anchoranalysis.mpp.mark

Methods in org.anchoranalysis.mpp.mark with parameters of type Dimensions

Modifier and Type	Method	Description
abstract BoundingBox	Mark.box(Dimensions dimensions, int regionID)	Calculates the bounding box for a specific region of the mark.
abstract BoundingBox	Mark.boxAllRegions(Dimensions dimensions)	Calculates the bounding box for all regions of the mark.
List<BoundingBox>	MarkCollection.boxList(Dimensions dimensions, int regionID)	Creates a list of bounding boxes for all marks in the collection.
static Point3d	PointClamper.clamp(Point3d point, Dimensions dimensions)	Clamps a double-precision point to be within the given dimensions.
static Point3i	PointClamper.clamp(Point3i point, Dimensions dimensions)	Clamps an integer point to be within the given dimensions.
ObjectMask	Mark.deriveObject(Dimensions dimensions, RegionMembershipWithFlags region, BinaryValuesByte binaryValues)	Creates an ObjectMask representation of the mark.
ObjectCollection	MarkCollection.deriveObjects(Dimensions dimensions, RegionMembershipWithFlags regionMembership)	Derives objects from the marks in the collection.
ColoredMarks	ColoredMarks.subsetWhereBBoxIntersects(Dimensions dimensions, int regionID, List<BoundingBox> intersectList)	Creates a subset of marks whose bounding boxes intersect with given boxes.

Constructors in org.anchoranalysis.mpp.mark with parameters of type Dimensions

Modifier	Constructor	Description
	MarkToObjectConverter(Optional<ScaleFactor> scaleFactor, Dimensions dimensions)	Create for particular Dimensions with a scaling-factor.
	MarkToObjectConverter(Optional<ScaleFactor> scaleFactor, Dimensions dimensions, RegionMembershipWithFlags regionMembership, BinaryValuesByte binaryValuesOut)	Creates a new MarkToObjectConverter instance.
	MarkToObjectConverter(Dimensions dimensions)	Create for particular Dimensions without a scaling-factor.

Uses of Dimensions in org.anchoranalysis.mpp.mark.conic

Methods in org.anchoranalysis.mpp.mark.conic with parameters of type Dimensions

Modifier and Type	Method	Description
BoundingBox	Ellipse.box(Dimensions dimensions, int regionID)
BoundingBox	Ellipsoid.box(Dimensions dimensions, int regionID)
BoundingBox	MarkWithPositionAndSingleRadius.box(Dimensions dimensions, int regionID)
BoundingBox	Ellipse.boxAllRegions(Dimensions dimensions)
BoundingBox	Ellipsoid.boxAllRegions(Dimensions dimensions)
BoundingBox	MarkWithPositionAndSingleRadius.boxAllRegions(Dimensions dimensions)
static BoundingBox	BoundingBoxCalculator.boxFromBounds(Point3d pos, double radius, boolean do3D, Dimensions dimensions)	Calculates a bounding box for a point with a scalar radius in all dimensions.
static BoundingBox	BoundingBoxCalculator.boxFromBounds(Point3d center, cern.colt.matrix.DoubleMatrix1D radiiMatrix, boolean do3D, Dimensions dimensions)	Calculates a bounding box for a point with varying radii in each dimension (that have already been resolved into a matrix)

Uses of Dimensions in org.anchoranalysis.mpp.mark.points

Methods in org.anchoranalysis.mpp.mark.points with parameters of type Dimensions

Modifier and Type	Method	Description
BoundingBox	LineSegment.box(Dimensions dimensions, int regionID)
BoundingBox	PointListBase.box(Dimensions dimensions, int regionID)
BoundingBox	RotatableBoundingBox.box(Dimensions dimensions, int regionID)
BoundingBox	LineSegment.boxAllRegions(Dimensions dimensions)
BoundingBox	PointList.boxAllRegions(Dimensions dimensions)
BoundingBox	Polygon.boxAllRegions(Dimensions dimensions)
BoundingBox	PolygonCurve.boxAllRegions(Dimensions dimensions)
BoundingBox	RotatableBoundingBox.boxAllRegions(Dimensions dimensions)

Uses of Dimensions in org.anchoranalysis.mpp.overlay

Methods in org.anchoranalysis.mpp.overlay with parameters of type Dimensions

Modifier and Type	Method	Description
BoundingBox	OverlayMark.box(DrawOverlay overlayWriter, Dimensions dim)
ObjectWithProperties	OverlayMark.createObject(Dimensions dimensionsEntireImage, BinaryValuesByte binaryValuesOut)

Uses of Dimensions in org.anchoranalysis.mpp.proposer

Methods in org.anchoranalysis.mpp.proposer that return Dimensions

Modifier and Type	Method	Description
Dimensions	ProposerContext.dimensions()	Gets the dimensions of the energy stack.

Uses of Dimensions in org.anchoranalysis.overlay

Methods in org.anchoranalysis.overlay with parameters of type Dimensions

Modifier and Type	Method	Description
abstract BoundingBox	Overlay.box(DrawOverlay overlayWriter, Dimensions dimensions)	A bounding-box around the overlay.
abstract ObjectWithProperties	Overlay.createObject(Dimensions dimensionsEntireImage, BinaryValuesByte binaryValuesOut)	Derives an object-mask representation of the overlay to be drawn with overlayWriter.

Uses of Dimensions in org.anchoranalysis.overlay.collection

Methods in org.anchoranalysis.overlay.collection with parameters of type Dimensions

Modifier and Type	Method	Description
ColoredOverlayCollection	ColoredOverlayCollection.subsetWhereBoxIntersects(Dimensions scene, DrawOverlay drawOverlay, List<BoundingBox> toIntersectWith)	Find overlays whose bounding-boxes intersect with any of the boxes in toIntersectWith.

Uses of Dimensions in org.anchoranalysis.overlay.object

Methods in org.anchoranalysis.overlay.object with parameters of type Dimensions

Modifier and Type	Method	Description
BoundingBox	OverlayObjectMask.box(DrawOverlay overlayWriter, Dimensions dimensions)
ObjectWithProperties	OverlayObjectMask.createObject(Dimensions dimensionsEntireImage, BinaryValuesByte binaryValuesOut)

Uses of Dimensions in org.anchoranalysis.plugin.annotation.bean.comparer

Methods in org.anchoranalysis.plugin.annotation.bean.comparer with parameters of type Dimensions

Modifier and Type	Method	Description
Findable<ObjectCollection>	MaskAsObject.loadAsObjects(Path reference, Dimensions dimensions, boolean debugMode, OperationContext context)
Findable<ObjectCollection>	Objects.loadAsObjects(Path filePathSource, Dimensions dimensions, boolean debugMode, OperationContext context)

Uses of Dimensions in org.anchoranalysis.plugin.annotation.bean.comparison.assigner

Methods in org.anchoranalysis.plugin.annotation.bean.comparison.assigner with parameters of type Dimensions

Modifier and Type	Method	Description
abstract T	AnnotationComparisonAssigner.createAssignment(ObjectsToCompare objectsToCompare, Dimensions dimensions, boolean useMIP, InputOutputContext context)	Creates an assignment based on the objects to compare.
OverlappingObjects	FeatureCostAssigner.createAssignment(ObjectsToCompare objectsToCompare, Dimensions dimensions, boolean useMIP, InputOutputContext context)
ObjectVoxelIntersection	MaskIntersectionAssigner.createAssignment(ObjectsToCompare objectsToCompare, Dimensions dimensions, boolean useMIP, InputOutputContext context)

Uses of Dimensions in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance

Methods in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance with parameters of type Dimensions

Modifier and Type	Method	Description
protected Channel	DistanceTransformForEachObject3D.createFromDimensions(Dimensions dimensions)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.blur

Methods in org.anchoranalysis.plugin.image.bean.blur with parameters of type Dimensions

Modifier and Type	Method	Description
void	BlurGaussian3D.blur(VoxelsUntyped voxels, Dimensions dimensions, MessageLogger logger)
void	BlurGaussianEachSlice2D.blur(VoxelsUntyped voxels, Dimensions dimensions, MessageLogger logger)
abstract void	BlurStrategy.blur(VoxelsUntyped voxels, Dimensions dimensions, MessageLogger logger)	Applies the blur operation to the given voxels.
protected double	BlurStrategy.calculateSigma(Dimensions dimensions, MessageLogger logger)	Calculates the sigma value to use for blurring, considering the dimensions and whether sigma is in meters.

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.channel.aggregator

Methods in org.anchoranalysis.plugin.image.bean.channel.aggregator that return types with arguments of type Dimensions

Modifier and Type	Method	Description
protected Optional<Dimensions>	ProjectableBufferAggregator.existingDimensions()

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.channel.provider

Methods in org.anchoranalysis.plugin.image.bean.channel.provider with parameters of type Dimensions

Modifier and Type	Method	Description
protected Channel	CreateNew.createFromDimensions(Dimensions dimensions)
protected abstract Channel	FromDimensionsBase.createFromDimensions(Dimensions dimensions)	Creates a channel from the given dimensions.

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.slice with parameters of type Dimensions

Modifier and Type	Method	Description
protected Channel	RepeatSlice.createFromDimensions(Dimensions dimensions)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.dimensions.provider

Methods in org.anchoranalysis.plugin.image.bean.dimensions.provider that return Dimensions

Modifier and Type	Method	Description
Dimensions	FromChannel.get()
Dimensions	GuessDimensions.get()
Dimensions	SpecifyDimensions.get()

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.mask.provider

Methods in org.anchoranalysis.plugin.image.bean.mask.provider with parameters of type Dimensions

Modifier and Type	Method	Description
protected Mask	AllValuesOff.createFromDimensions(Dimensions dimensions)
protected Mask	AllValuesOn.createFromDimensions(Dimensions dimensions)
protected abstract Mask	FromDimensionsBase.createFromDimensions(Dimensions dimensions)	Creates a Mask from the given Dimensions.

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.mask.provider.convert

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.convert with parameters of type Dimensions

Modifier and Type	Method	Description
protected Mask	FromObjects.createFromDimensions(Dimensions dimensions)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.mask.provider.morphological

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.morphological with parameters of type Dimensions

Modifier and Type	Method	Description
protected Mask	Box.createFromDimensions(Dimensions dimensions)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.object.filter

Method parameters in org.anchoranalysis.plugin.image.bean.object.filter with type arguments of type Dimensions

Modifier and Type	Method	Description
ObjectCollection	ObjectFilterPredicate.filter(ObjectCollection objectsToFilter, Optional<Dimensions> dimensions)
protected abstract boolean	ObjectFilterPredicate.match(ObjectMask object, Optional<Dimensions> dimensions)	A predicate condition for an object to be kept in the collection.
protected boolean	ObjectFilterRelation.match(ObjectMask object, Optional<Dimensions> dimensions)
protected abstract boolean	ObjectFilterRelation.match(ObjectMask object, Optional<Dimensions> dim, DoubleBiPredicate relation)	Performs the matching operation using the resolved relation.
protected void	ObjectFilterPredicate.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)	Performs any necessary initialization before filtering begins.
protected void	ObjectFilterRelation.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.object.filter.collective

Method parameters in org.anchoranalysis.plugin.image.bean.object.filter.collective with type arguments of type Dimensions

Modifier and Type	Method	Description
protected boolean	DiscardOutliers.match(ObjectMask object, Optional<Dimensions> dimensions)
protected boolean	RelationWithMatches.match(ObjectMask object, Optional<Dimensions> dim, DoubleBiPredicate relation)
protected void	DiscardOutliers.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)
protected void	RelationWithMatches.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.object.filter.combine

Method parameters in org.anchoranalysis.plugin.image.bean.object.filter.combine with type arguments of type Dimensions

Modifier and Type	Method	Description
ObjectCollection	And.filter(ObjectCollection objects, Optional<Dimensions> dim)
ObjectCollection	Or.filter(ObjectCollection objectsToFilter, Optional<Dimensions> dim)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.object.filter.independent

Method parameters in org.anchoranalysis.plugin.image.bean.object.filter.independent with type arguments of type Dimensions

Modifier and Type	Method	Description
protected boolean	GreaterIntersectionWith.match(ObjectMask object, Optional<Dimensions> dimensions)
protected boolean	IntensityGreaterEqualThan.match(ObjectMask object, Optional<Dimensions> dimensions)
protected boolean	IntersectsWith.match(ObjectMask objectToIntersectWith, Optional<Dimensions> dimensions)
protected boolean	NotTouchingSceneBorder.match(ObjectMask object, Optional<Dimensions> dimensions)
protected boolean	ThresholdedFeature.match(ObjectMask object, Optional<Dimensions> dim, DoubleBiPredicate relation)
protected boolean	ThresholdedVolume.match(ObjectMask object, Optional<Dimensions> dim, DoubleBiPredicate relation)
protected void	GreaterIntersectionWith.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)
protected void	IntensityGreaterEqualThan.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)
protected void	IntersectsWith.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)
protected void	ThresholdedFeature.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)
protected void	ThresholdedVolume.start(Optional<Dimensions> dimensions, ObjectCollection objectsToFilter)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.object.provider

Methods in org.anchoranalysis.plugin.image.bean.object.provider that return Dimensions

Modifier and Type	Method	Description
protected Dimensions	WithDimensionsBase.createDimensions()	Creates the dimensions using the specified DimensionsProvider.

Methods in org.anchoranalysis.plugin.image.bean.object.provider that return types with arguments of type Dimensions

Modifier and Type	Method	Description
protected Optional<Dimensions>	WithOptionalDimensionsBase.createDims()	Creates the dimensions if a DimensionsProvider is specified.

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.object.provider.filter

Method parameters in org.anchoranalysis.plugin.image.bean.object.provider.filter with type arguments of type Dimensions

Modifier and Type	Method	Description
protected ObjectCollection	ObjectCollectionProviderFilterBase.filter(ObjectCollection objects, Optional<Dimensions> dimensions, Optional<List<ObjectMask>> objectsRejected)	Filters the given object collection using the specified filter.

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.scale

Method parameters in org.anchoranalysis.plugin.image.bean.scale with type arguments of type Dimensions

Modifier and Type	Method	Description
ScaleFactor	ConstantScaleFactor.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	FitTo.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	Invert.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	MinimumXYResolution.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	ToDimensions.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)
ScaleFactor	ToSuggested.calculate(Optional<Dimensions> dimensionsToBeScaled, Optional<ImageSizeSuggestion> suggestedSize)

Uses of Dimensions in org.anchoranalysis.plugin.image.bean.stack.provider.color

Methods in org.anchoranalysis.plugin.image.bean.stack.provider.color with parameters of type Dimensions

Modifier and Type	Method	Description
protected abstract ColoredObjectCollection	ColoredBase.coloredObjectsToDraw(Dimensions backgroundDimensions)	Creates colored-objects to be drawn.
protected ColoredObjectCollection	ColoredBaseWithGenerator.coloredObjectsToDraw(Dimensions backgroundDimensions)
protected ColoredObjectCollection	ColoredMask.coloredObjectsToDraw(Dimensions backgroundDimensions)
protected ColoredObjectCollection	ThreeColoredObjects.coloredObjectsToDraw(Dimensions backgroundDimensions)
protected abstract ObjectCollection	ColoredBaseWithGenerator.objectsToDraw(Dimensions backgroundDimensions)	The objects to draw (without any colors) on the background.
protected ObjectCollection	ColoredObjects.objectsToDraw(Dimensions backgroundDimensions)

Uses of Dimensions in org.anchoranalysis.plugin.image.channel

Methods in org.anchoranalysis.plugin.image.channel with parameters of type Dimensions

Modifier and Type	Method	Description
static void	DimensionsChecker.check(Channel channelToCheck, String channelToCheckName, Dimensions dimFromChannel)	Checks a channel to make sure it's the same size as an existing channel.
static void	DimensionsChecker.check(Mask maskToCheck, String channelToCheckName, Dimensions dimensionsFromChannel)	Checks a mask to make sure it's the same size as an existing channel.

Uses of Dimensions in org.anchoranalysis.plugin.image.feature.bean.dimensions

Methods in org.anchoranalysis.plugin.image.feature.bean.dimensions with parameters of type Dimensions

Modifier and Type	Method	Description
protected double	Extent.calculateForAxis(Dimensions dimensions, Axis axis)
protected abstract double	ForSpecificAxis.calculateForAxis(Dimensions dimensions, Axis axis)	Calculates a feature value for a specific axis of the given dimensions.
protected double	VoxelPhysicalSize.calculateForAxis(Dimensions dimensions, Axis axis)
protected double	Area.calculateFromDimensions(Dimensions dim)
protected double	ForSpecificAxis.calculateFromDimensions(Dimensions dim)
protected abstract double	FromDimensionsBase.calculateFromDimensions(Dimensions dimensions)	Calculates a feature value from the given dimensions.
protected double	Volume.calculateFromDimensions(Dimensions dim)

Uses of Dimensions in org.anchoranalysis.plugin.image.object

Methods in org.anchoranalysis.plugin.image.object with parameters of type Dimensions

Modifier and Type	Method	Description
static ObjectCollection	ObjectIntersectionRemover.removeIntersectingVoxels(ObjectCollection objects, Dimensions dimensions, boolean errorDisconnectedObjects)	Removes intersecting voxels from a collection of objects.

Uses of Dimensions in org.anchoranalysis.plugin.io.multifile

Methods in org.anchoranalysis.plugin.io.multifile that return Dimensions

Modifier and Type	Method	Description
Dimensions	OpenedMultiFile.dimensionsForSeries(int seriesIndex, Logger logger)

Uses of Dimensions in org.anchoranalysis.plugin.mpp.bean.stack.provider

Methods in org.anchoranalysis.plugin.mpp.bean.stack.provider with parameters of type Dimensions

Modifier and Type	Method	Description
protected ObjectCollection	ColoredMarks.objectsToDraw(Dimensions backgroundDimensions)

Uses of Dimensions in org.anchoranalysis.plugin.points.bean.fitter

Methods in org.anchoranalysis.plugin.points.bean.fitter that return Dimensions

Modifier and Type	Method	Description
Dimensions	PointsFitterToMark.createDim()	Creates and returns the Dimensions using the specified provider.

Methods in org.anchoranalysis.plugin.points.bean.fitter with parameters of type Dimensions

Modifier and Type	Method	Description
protected abstract void	LinearLeastSquaresViaNormalEquationBase.applyCoefficientsToMark(cern.colt.matrix.DoubleMatrix2D matrixV, Mark mark, Dimensions dimensions)	Applies the calculated coefficients to the mark.
void	FitResult.applyFitResultToMark(Ellipsoid mark, Dimensions sceneDim, double shell)	Applies the fit result to an Ellipsoid mark.
void	LinearLeastSquaresEllipseFitter.fit(List<Point3f> points, Mark mark, Dimensions dimensions)
void	LinearLeastSquaresEllipsoidFitter.fit(List<Point3f> points, Mark mark, Dimensions dimensions)
void	LinearLeastSquaresViaNormalEquationBase.fit(List<Point3f> points, Mark mark, Dimensions dimensions)
void	Reference.fit(List<Point3f> points, Mark mark, Dimensions dimensions)
void	ReflectInAxesWithinDistance.fit(List<Point3f> points, Mark mark, Dimensions dimensions)
void	PointsFitterToMark.fitPointsToMark(List<Point3f> pointsForFitter, Mark mark, Dimensions dim)	Fits a list of points to a mark using the specified points fitter.

Uses of Dimensions in org.anchoranalysis.plugin.points.calculate.ellipsoid

Methods in org.anchoranalysis.plugin.points.calculate.ellipsoid with parameters of type Dimensions

Modifier and Type	Method	Description
static Ellipsoid	EllipsoidFactory.createMarkEllipsoidLeastSquares(CheckedSupplier<List<Point3i>,CreateException> opPoints, Dimensions dimensions, boolean suppressZCovariance, double shell)	Creates a Ellipsoid using least-squares fitting to a supplied list of points.
static Ellipsoid	EllipsoidFactory.createMarkEllipsoidLeastSquares(ObjectMask object, Dimensions dimensions, boolean suppressZCovariance, double shell)	Creates a Ellipsoid using least-squares fitting to the points on the outline of an ObjectMask.

Uses of Dimensions in org.anchoranalysis.test.image.object

Constructors in org.anchoranalysis.test.image.object with parameters of type Dimensions

Modifier	Constructor	Description
	CutOffCornersObjectFixture(Dimensions dimensions)	Create with any check on dimensions.