Uses of Class
org.anchoranalysis.image.core.stack.named.NamedStacks

Packages that use NamedStacks

Package	Description
org.anchoranalysis.image.core.stack.named	A collection of Stacks, each with a unique identifier as a name.
org.anchoranalysis.image.io.channel.map	Non-bean classes for a mapping of names to Channels.
org.anchoranalysis.image.io.stack.input	Non-bean classes for reading a Stack from the filesystem.
org.anchoranalysis.plugin.image.task.bean.format.convertstyle	Different approaches for converting sets of channels (RGB, independently etc.) to another image format.
org.anchoranalysis.plugin.image.task.grouped	Non-bean classes about grouping channels or other inputs.

Uses of NamedStacks in org.anchoranalysis.image.core.stack.named

Methods in org.anchoranalysis.image.core.stack.named that return NamedStacks

Modifier and Type	Method	Description
NamedStacks	NamedStacks.applyOperation(UnaryOperator<Stack> operation, Optional<Dimensions> dimensions)	Applies an operation on each Stack in the collection and returns a new derived collection.
NamedStacks	NamedStacksUniformSize.asNamedStacks()	Exposes the stacks as a NamedStacks.
NamedStacks	NamedStacks.subset(StringSet identifiersToInclude)	Creates a new collection containing only items whose keys exist in a particular set.

Uses of NamedStacks in org.anchoranalysis.image.io.channel.map

Methods in org.anchoranalysis.image.io.channel.map with parameters of type NamedStacks

Modifier and Type	Method	Description
void	NamedChannelsConcatenate.addAsSeparateChannels(NamedStacks stackCollection, int t, Logger logger)
void	NamedChannelsMap.addAsSeparateChannels(NamedStacks destination, int timeIndex, Logger logger)	Adds each Channel as a separate Stack in a NamedStacks.
void	OpenedNamedChannels.addAsSeparateChannels(NamedStacks destination, int timeIndex, Logger logger)

Uses of NamedStacks in org.anchoranalysis.image.io.stack.input

Methods in org.anchoranalysis.image.io.stack.input that return NamedStacks

Modifier and Type	Method	Description
default NamedStacks	ProvidesStackInput.asSet(Logger logger)	Exposes the input as a set of named stacks (inferring the names).

Uses of NamedStacks in org.anchoranalysis.plugin.image.task.bean.format.convertstyle

Methods in org.anchoranalysis.plugin.image.task.bean.format.convertstyle that return NamedStacks

Modifier and Type	Method	Description
abstract NamedStacks	ChannelConvertStyle.convert(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, Logger logger)	Converts a particular set of channels.
NamedStacks	ExtractToRGB.convert(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, Logger logger)
NamedStacks	IndependentChannels.convert(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, Logger logger)
NamedStacks	RGBIfNamesMatch.convert(Set<String> channelNames, ChannelGetterForTimepoint channelGetter, Logger logger)

Uses of NamedStacks in org.anchoranalysis.plugin.image.task.grouped

Methods in org.anchoranalysis.plugin.image.task.grouped that return NamedStacks

Modifier and Type	Method	Description
NamedStacks	ChannelSource.getStackStore()	A named set of Stacks from which Channels may be extracted.

Constructors in org.anchoranalysis.plugin.image.task.grouped with parameters of type NamedStacks

Modifier	Constructor	Description
	ChannelSource(NamedStacks stackStore, ConsistentChannelChecker channelChecker, Optional<SizeXY> resizeTo, VoxelsResizer resizer)	Creates a new ChannelSource instance.