Package | Description |
---|---|
org.anchoranalysis.image.core.stack.named |
A collection of
Stack s, each with a unique identifier
as a name. |
org.anchoranalysis.image.io.channel.map |
Non-bean classes for a mapping of names to
Channel s. |
org.anchoranalysis.image.io.stack.input |
Non-bean classes for reading a
Stack from the
filesystem. |
org.anchoranalysis.plugin.image.task.bean.format.convertstyle |
Different approaches for converting sets of channels (RGB, independently etc.) to another image
format.
|
org.anchoranalysis.plugin.image.task.grouped |
Non-bean classes about grouping channels or other inputs.
|
Modifier and Type | Method and Description |
---|---|
NamedStacks |
NamedStacks.applyOperation(java.util.function.UnaryOperator<Stack> operation,
Optional<Dimensions> dimensions)
Applies an operation on each
Stack in the collection and returns a new derived
collection. |
NamedStacks |
NamedStacksUniformSize.asNamedStacks()
Exposes the stacks as a
NamedStacks . |
NamedStacks |
NamedStacks.subset(StringSet identifiersToInclude)
Creates a new collection containing only items whose keys exist in a particular set.
|
Modifier and Type | Method and Description |
---|---|
void |
OpenedNamedChannels.addAsSeparateChannels(NamedStacks destination,
int timeIndex,
Logger logger) |
void |
NamedChannelsConcatenate.addAsSeparateChannels(NamedStacks stackCollection,
int t,
Logger logger) |
void |
NamedChannelsMap.addAsSeparateChannels(NamedStacks destination,
int timeIndex,
Logger logger)
|
Modifier and Type | Method and Description |
---|---|
default NamedStacks |
ProvidesStackInput.asSet(Logger logger)
Exposes the input as a set of named stacks (inferring the names).
|
Modifier and Type | Method and Description |
---|---|
NamedStacks |
IndependentChannels.convert(Set<String> channelNames,
ChannelGetterForTimepoint channelGetter,
Logger logger) |
abstract NamedStacks |
ChannelConvertStyle.convert(Set<String> channelNames,
ChannelGetterForTimepoint channelGetter,
Logger logger)
Converts a particular set of channels.
|
NamedStacks |
RGBIfNamesMatch.convert(Set<String> channelNames,
ChannelGetterForTimepoint channelGetter,
Logger logger) |
NamedStacks |
ExtractToRGB.convert(Set<String> channelNames,
ChannelGetterForTimepoint channelGetter,
Logger logger) |
Modifier and Type | Method and Description |
---|---|
NamedStacks |
ChannelSource.getStackStore()
|
Constructor and Description |
---|
ChannelSource(NamedStacks stackStore,
ConsistentChannelChecker channelChecker,
Optional<SizeXY> resizeTo,
VoxelsResizer resizer) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.