Uses of Package
org.anchoranalysis.image.core.stack
Packages that use org.anchoranalysis.image.core.stack
Package
Description
Generates output images to illustrate a
Assignment between annotations.What to compare an annotation (ground truth) against?
A particular stack used in feature-calculations called a
EnergyStack together with related classes.Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
Non-beans to specify how to form a single-image by spatially combining other images.
Base classes for providers of different core data entities related to images.
A provider of
Stacks.Beans to specify how to form a single-image by spatially combining other images.
Conversions and operations involving Java AWT's
BufferedImage.Converts a channel to other data-types.
Defines the key data object,
Stack, and related
classes.A collection of
Stacks, each with a unique identifier
as a name.Beans pertaining to feature definition and calculation.
Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
Image-related implementations of
FeatureInput.Instance-segmentation of a
Stack.Non-beans pertaining to segmentation of images via model inference.
How to represent an object-mask in a raster that is being drawn.
Beans to combine multiple stacks into a single stack before outputting.
Bean classes for reading
ImageMetadata from the
file-system.Bean classes for reading raster-files from the filesystem.
Bean classes for writing raster-files to the filesystem.
Non-bean classes for reading a
Channel from the
filesystem.Non-bean classes for a mapping of names to
Channels.Non-bean classes for writing a
Channel to the
filesystem.Writing an
ObjectCollection to the filesystem as a
single-channeled stack.Writing an
ObjectCollection to the filesystem as
multiple binary singled-channeled images.Writing an
ObjectCollection to the filesystem as
RGB raster-images.Non-bean classes for reading / writing a
Stack from
and to the filesystem.Non-bean classes for reading a
Stack from the
filesystem.Non-bean classes for writing a
Stack to the
filesystem.Base classes for generators that ultimately write only a bounding-box portion of a
Stack to the filesystem.Base classes for generators that ultimately write a
Stack to the filesystem.A time-sequence of
Stacks.Writing stacks to the file system using the Bioformats library.
Raster-writers that use ImageJ to write images to the filesystem.
Converts to and from ImageJ data-structures for images.
Non-beans for writing data structures related to marked point processes from the file system.
Beans relating to drawing an
Overlay on an image.Drawing an overlay on an image.
Implementations of
ChannelProvider that use FIJI.Euclidean Distance Transform
implementations via FIJI.
Implementations of
MaskProvider that use FIJI.Implementations of
ChannelProvider that are
generic base-classes or otherwise abstract or general.Implementations of
ChannelProvider that perform
arithmetic on voxels in one or more Channels.Implementations of
ChannelProvider that sets the
values of the voxels in a Channel.Implementations of
ChannelProvider that converts a
Channel from one voxel-type to another.Implementations of
ChannelProvider that calculate
the gradient of a Channel's voxels in one or more
dimensions.Implementations of
ChannelProvider that manipulate
the intensity-values of the voxels of a Channel's
voxels.Implementations of
ChannelProvider that involve
conversion from or application of Masks.Implementations of
ChannelProvider that involve
conversion from or application of ObjectMasks.Implementations of
ChannelProvider that assign a
score to particular subregions of a channel.Implementations of
ChannelProvider that process 3D
channels slice-by-slice.Implementations of
MaskProvider.Implementations of
MaskProvider that combine
existing providers.Implementations of
MaskProvider that convert
providers of other types to ObjectMasks.Implementations of
MaskProvider that implement
morphological operations.Provides if-else conditions to a
MaskProvider.Implementations of
MaskProvider that process 3D
masks slice-by-slice.Implementations of
ObjectCollectionProvider
involving segmentation.Implementations of
StackProvider.Implementations of
StackProvider that color
portions of an image.Implementations of
ThumbnailFromObjects.Implementations of
ThumbnailFromStack.Implementations of
FeatureImageMetadata.Tasks for converting image-formats.
Tasks to scale an image.
Non-bean classes pertaining to
Features as used in tasks.Non-bean classes about grouping channels or other inputs.
Non-bean classes pertaining to combining stacks into a single stack.
Non-bean classes for thumbnail creation.
Implementations of
ChannelProvider that call ImageJ.Non-linear filters using ImageJ that use the statistical moments of the
intensity values in the kernel.
Non-linear filters using ImageJ that use the statistical rank of the intensity values in the
kernel.
Implementations of
MaskProvider that call ImageJ.Implementations of
StackProvider that call
ImageJ.Different types of image-file-formats whose headers can provide
ImageMetadata.Implementations of
ImageMetadataReader.Implementations of
StackWriter.Non-bean classes to help use multiple files to represent a single
Stack.Buffers used in
org.anchoranalysis.plugin.io.multifile.Implementations of
StackProvider involving
Mark or related classes.Segmenting a
Stack using the ONNX Runtime to produce
an ObjectCollection.Operations involving color-spaces and OpenCV.
Segmentation of a
Stack using OpenCV.Conversion to/from OpenCV data-structures.
Convex hull operations.
Testing utilities and fixtures with no greater downstream dependency than anchor-image-io
or anchor-io-bioformats or anchor-imagej.
Utilities for testing-related reading and writing to the filesystem.
Load test image data.
Fixtures or other helper classes for testing image segmentation algorithms.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.annotation.io.assignment.generatorClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.annotation.io.bean.comparerClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.feature.energy
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.bean.displayerClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.A stack with exactly three channels, respectively for red, green and blue colors.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.bean.nonbean.init
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.bean.providerClassDescriptionProvides a stack-representation of an entity.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.bean.provider.stackClassDescriptionProvides a stack-representation of an entity.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.bean.spatial.arrangeClassDescriptionA stack with exactly three channels, respectively for red, green and blue colors.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.core.bufferedimage
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.core.channel.convert
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.core.stackClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.Timestamps and other metadata associated with an image file-path, but not with the file's contents.Metadata to describe a pyramid-representation of images, if at least one exists in a file.A stack with exactly three channels, respectively for red, green and blue colors.One or more single-channel images that all have the same dimensions.A list of
Channels that are permitted to vary in size. -
Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.core.stack.named
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.feature.beanClassDescriptionInformation about an image, but not about the intensity or content of image voxels.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.feature.inputClassDescriptionInformation about an image, but not about the intensity or content of image voxels.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.inference.segmentClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.bean.object.drawClassDescriptionA stack with exactly three channels, respectively for red, green and blue colors.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.bean.stack.combineClassDescriptionProvides a stack-representation of an entity.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.bean.stack.metadata.readerClassDescriptionInformation about an image, but not about the intensity or content of image voxels.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.bean.stack.reader
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.bean.stack.writer
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.channel.inputClassDescriptionInformation about an image, but not about the intensity or content of image voxels.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.channel.map
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.channel.output
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.object.output.rgbClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.A stack with exactly three channels, respectively for red, green and blue colors.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.stackClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.A stack with exactly three channels, respectively for red, green and blue colors.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.stack.inputClassDescriptionTimestamps and other metadata associated with an image file-path, but not with the file's contents.Information about an image, but not about the intensity or content of image voxels.Metadata to describe a pyramid-representation of images, if at least one exists in a file.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.stack.output
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.stack.output.boxClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.stack.output.generatorClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.image.io.stack.time
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.io.bioformats.bean.writer
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.io.imagej.convert
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.mpp.io.outputClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.overlay.beanClassDescriptionA stack with exactly three channels, respectively for red, green and blue colors.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.overlay.writerClassDescriptionA stack with exactly three channels, respectively for red, green and blue colors.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.bean.stack.providerClassDescriptionProvides a stack-representation of an entity.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.bean.stack.provider.colorClassDescriptionProvides a stack-representation of an entity.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.bean.thumbnail.stackClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.feature.bean.metadataClassDescriptionInformation about an image, but not about the intensity or content of image voxels.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.task.featureClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.task.grouped
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.task.sliceClassDescriptionA stack with exactly three channels, respectively for red, green and blue colors.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.image.thumbnailClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.imagej.bean.stack.providerClassDescriptionProvides a stack-representation of an entity.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.io.bean.metadata.headerClassDescriptionTimestamps and other metadata associated with an image file-path, but not with the file's contents.Information about an image, but not about the intensity or content of image voxels.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.io.bean.metadata.readerClassDescriptionInformation about an image, but not about the intensity or content of image voxels.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.io.multifileClassDescriptionMetadata to describe a pyramid-representation of images, if at least one exists in a file.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.io.multifile.buffer
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.opencv.bean.colorClassDescriptionProvides a stack-representation of an entity.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.opencv.bean.stack
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.plugin.opencv.convert
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.test.imageClassDescriptionStack that contains 1 or 3 channels so that we and display it as either grayscale or as an RGB unsigned 8-bit image, respectively.One or more single-channel images that all have the same dimensions.
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.test.image.io
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.test.image.load
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Classes in org.anchoranalysis.image.core.stack used by org.anchoranalysis.test.image.segment