Uses of Interface
org.anchoranalysis.image.core.stack.ProviderAsStack

Packages that use ProviderAsStack

Package	Description
org.anchoranalysis.image.bean.provider	Base classes for providers of different core data entities related to images.
org.anchoranalysis.image.bean.provider.stack	A provider of Stacks.
org.anchoranalysis.image.io.bean.stack.combine	Beans to combine multiple stacks into a single stack before outputting.
org.anchoranalysis.plugin.fiji.bean.channel.provider	Implementations of ChannelProvider that use FIJI.
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance	Euclidean Distance Transform implementations via FIJI.
org.anchoranalysis.plugin.fiji.bean.mask.provider	Implementations of MaskProvider that use FIJI.
org.anchoranalysis.plugin.image.bean.channel.provider	Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic	Implementations of ChannelProvider that perform arithmetic on voxels in one or more Channels.
org.anchoranalysis.plugin.image.bean.channel.provider.assign	Implementations of ChannelProvider that sets the values of the voxels in a Channel.
org.anchoranalysis.plugin.image.bean.channel.provider.convert	Implementations of ChannelProvider that converts a Channel from one voxel-type to another.
org.anchoranalysis.plugin.image.bean.channel.provider.gradient	Implementations of ChannelProvider that calculate the gradient of a Channel's voxels in one or more dimensions.
org.anchoranalysis.plugin.image.bean.channel.provider.intensity	Implementations of ChannelProvider that manipulate the intensity-values of the voxels of a Channel's voxels.
org.anchoranalysis.plugin.image.bean.channel.provider.mask	Implementations of ChannelProvider that involve conversion from or application of Masks.
org.anchoranalysis.plugin.image.bean.channel.provider.object	Implementations of ChannelProvider that involve conversion from or application of ObjectMasks.
org.anchoranalysis.plugin.image.bean.channel.provider.score	Implementations of ChannelProvider that assign a score to particular subregions of a channel.
org.anchoranalysis.plugin.image.bean.channel.provider.slice	Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.image.bean.mask.provider	Implementations of MaskProvider.
org.anchoranalysis.plugin.image.bean.mask.provider.combine	Implementations of MaskProvider that combine existing providers.
org.anchoranalysis.plugin.image.bean.mask.provider.convert	Implementations of MaskProvider that convert providers of other types to ObjectMasks.
org.anchoranalysis.plugin.image.bean.mask.provider.morphological	Implementations of MaskProvider that implement morphological operations.
org.anchoranalysis.plugin.image.bean.mask.provider.predicate	Provides if-else conditions to a MaskProvider.
org.anchoranalysis.plugin.image.bean.mask.provider.segment	Implementations of MaskProvider where an ObjectCollection is created by segmenting a Channel.
org.anchoranalysis.plugin.image.bean.mask.provider.slice	Implementations of MaskProvider that process 3D masks slice-by-slice.
org.anchoranalysis.plugin.image.bean.object.provider.segment	Implementations of ObjectCollectionProvider involving segmentation.
org.anchoranalysis.plugin.image.bean.stack.provider	Implementations of StackProvider.
org.anchoranalysis.plugin.image.bean.stack.provider.color	Implementations of StackProvider that color portions of an image.
org.anchoranalysis.plugin.imagej.bean.channel.provider	Implementations of ChannelProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter	Filters using ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments	Non-linear filters using ImageJ that use the statistical moments of the intensity values in the kernel.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank	Non-linear filters using ImageJ that use the statistical rank of the intensity values in the kernel.
org.anchoranalysis.plugin.imagej.bean.mask.provider	Implementations of MaskProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.stack.provider	Implementations of StackProvider that call ImageJ.
org.anchoranalysis.plugin.mpp.bean.stack.provider	Implementations of StackProvider involving Mark or related classes.
org.anchoranalysis.plugin.opencv.bean.color	Operations involving color-spaces and OpenCV.
org.anchoranalysis.plugin.points.bean.convexhull	Convex hull operations.

Uses of ProviderAsStack in org.anchoranalysis.image.bean.provider

Classes in org.anchoranalysis.image.bean.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	BeanProviderAsStackBase<T,S>	A provider base-class that as well as providing type S, also provides a Stack.
class	ChannelProvider	Base class for beans that implement Provider to provide a Channel and associated Stack.
class	ChannelProviderBinary	Implementation of ChannelProvider that calls two ChannelProviders that must provide Channels of the same dimensions.
class	ChannelProviderTernary	Implementation of ChannelProvider that calls three ChannelProviders that must provide Channels of the same dimensions.
class	ChannelProviderUnary	Implementation of ChannelProvider that calls a single delegate ChannelProvider.
class	MaskProvider	Base class for beans that implement Provider to provide a Mask and associated Stack.
class	MaskProviderUnary	Implementation of MaskProvider that calls a single delegate MaskProvider.

Uses of ProviderAsStack in org.anchoranalysis.image.bean.provider.stack

Classes in org.anchoranalysis.image.bean.provider.stack that implement ProviderAsStack

Modifier and Type	Class	Description
class	Arrange	Creates a stack that combines other stacks.
class	StackProvider	Base class for beans that implement Provider to provide a Stack.
class	StackProviderUnary	Implementation of StackProvider that calls a single delegate Provider<Stack>.

Uses of ProviderAsStack in org.anchoranalysis.image.io.bean.stack.combine

Classes in org.anchoranalysis.image.io.bean.stack.combine that implement ProviderAsStack

Modifier and Type	Class	Description
class	TileWithLabels	Tiles a number of StackProviderWithLabels as a single StackProvider.
class	WriteText	Creates an image that contains text only.

Uses of ProviderAsStack in org.anchoranalysis.plugin.fiji.bean.channel.provider

Classes in org.anchoranalysis.plugin.fiji.bean.channel.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	AnisotropicDiffusion	Performs Perona-Malik Anisotropic Diffusion.
class	MinimumFilter	Applies a minimum filter to a channel using ImageJ's MinMaxMedian plugin.

Uses of ProviderAsStack in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance

Classes in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance that implement ProviderAsStack

Modifier and Type	Class	Description
class	DistanceTransform3D	Euclidian Distance Transform from ImageJ that works on 2D as well as 3D z-stacks.
class	DistanceTransformForEachObject3D	Like DistanceTransform3D but applies the distance transform separately for each object in a collection.

Uses of ProviderAsStack in org.anchoranalysis.plugin.fiji.bean.mask.provider

Classes in org.anchoranalysis.plugin.fiji.bean.mask.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	AutoLocalThreshold	Applies local thresholding algorithm using Fiji's {link Auto_Local_Threshold} plugin

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider

Classes in org.anchoranalysis.plugin.image.bean.channel.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	CreateNew	Creates a new channel with all values initialized to a constant (by default zero)
class	Duplicate	Creates a duplicate of the input channel.
class	FromDimensionsBase	An abstract base class for creating a channel from specified dimensions.
class	FromInput	Finds the input-stack using a conventional name of input_image - and extracts the first channel
class	FromStack	Extracts a channel from a provider of a stack.
class	IfParamEquals	Provides a channel based on a condition from a dictionary.
class	Reference	Provides a channel by referencing it from a a set of named-channels.
class	TwoVoxelMappingBase	Takes the two channels and creates a NEW third channel whose pixels are a function of the two channels
class	UnaryWithObjectsBase	An abstract base class for creating a channel from an existing channel and a collection of objects.
class	UnaryWithValueBase	A ChannelProviderUnary which has a scalar value field.

Methods in org.anchoranalysis.plugin.image.bean.channel.provider that return ProviderAsStack

Modifier and Type	Method	Description
ProviderAsStack	FromStack.getStack()	Provides a stack.

Methods in org.anchoranalysis.plugin.image.bean.channel.provider with parameters of type ProviderAsStack

Modifier and Type	Method	Description
void	FromStack.setStack(ProviderAsStack stack)	Provides a stack.

Constructors in org.anchoranalysis.plugin.image.bean.channel.provider with parameters of type ProviderAsStack

Modifier	Constructor	Description
	FromStack(ProviderAsStack stack)	Creates a new instance with a specified stack provider.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic that implement ProviderAsStack

Modifier and Type	Class	Description
final class	AddConstant	Adds a constant value to each voxel in a channel.
class	ArithmeticWithConstantBase	Base-class for operations that perform a binary arithmetic operation with each voxel-value and a constant.
class	ArithmeticWithConstantConditionallyWriteBase	Base class for arithmetic operations that conditionally overwrite voxel values with a constant.
class	Invert	Inverts the intensity values of a Channel by subtracting each voxel from the maximum value for the channel's data type.
class	MaxTwoChannels	Creates a new channel by taking the maximum value of corresponding voxels from two input channels.
class	MaxWithConstant	Replaces voxel values with a constant value if the constant is greater than the original voxel value.
class	MeanThreeChannels	Creates a new channel that is the mean of three input channels.
class	MinTwoChannels	Creates a new channel by taking the minimum value of corresponding voxels from two input channels.
class	MinWithConstant	Replaces voxel values with a constant value if the constant is less than the original voxel value.
class	MultiplyConstant	Multiplies each voxel value in a channel by a constant value.
class	MultiplyTwoChannels	Creates a new channel by multiplying corresponding voxels from two input channels.
class	SubtractFromConstant	Subtracts each voxel value in a channel from a constant value.
class	SubtractMean	Subtracts the mean intensity (of the entire channel or a masked portion thereof) from every voxel.
class	SubtractTwoChannels	Creates a new channel by subtracting corresponding voxels of the second channel from the first channel.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.assign

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.assign that implement ProviderAsStack

Modifier and Type	Class	Description
class	AssignFromChannel	Copies the pixels from channelAssignFrom to channel (possibly masking).
class	AssignFromDictionary	Assigns a value from a dictionary to all voxels in a channel.
class	AssignFromIntersectingObjects	Matches source-objects to target objects, based upon intersection, and assigns the value in the respective source object to the target object
class	AssignValue	Assigns a constant (scalar) value to the portion of the image covered by a mask

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.convert

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.convert that implement ProviderAsStack

Modifier and Type	Class	Description
class	Convert<T>	Converts a channel by applying a converter (no histogram is involved in the conversion).
class	ConvertBase	Base class for channel providers that perform conversions on a single input channel.
class	ConvertWithHistogram<T>	Converts a channel to a different voxel data-type by applying a converter with an associated histogram.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.gradient

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.gradient that implement ProviderAsStack

Modifier and Type	Class	Description
class	GradientBase	Base class to calculate the gradient of the voxels in a Channel.
class	GradientBaseAddSum	Like GradientBase but allows an arbitrary constant to be added to voxels storing the gradient.
class	GradientForAxis	Extracts the gradient in the direction of a particular axis (identified by an index)
class	GradientXY	Calculates a Channel's gradient along the x and y axes.
class	Sobel	3x3 Sobel Filter

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.intensity

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.intensity that implement ProviderAsStack

Modifier and Type	Class	Description
class	Blur	Blurs an image using a particular strategy (defaults to a gaussian blur in each slice)
class	IfVoxelZero	Creates a new channel which is a merged version of two input channels according to rules.
class	Median	Applies a median-filter with square kernel
class	NormalizeDifferenceToMedian	Corrects a channel in the following way
class	NormalizeObjectIntensity	Rewrites the intensity for each object-mask (assume no overlap) so that its mean is 128
class	QuantileStretch	Changes the voxel values to map the range of 0th quantile to xth quantile across the entire voxel data range
class	ScaleXY	Scales the channel in the X and Y dimensions.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.mask

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.mask that implement ProviderAsStack

Modifier and Type	Class	Description
class	FromMask	Creates a Channel directly from a Mask without any modification.
class	FromMaskBase	A base class for a ChannelProvider which also uses a binary-mask, but which doesn't use any other ChannelProvider as an input.
class	UnaryWithMaskBase	A base class for a ChannelProviderUnary which also uses a binary mask.
class	ZeroOutsideMask	Set pixels NOT IN the mask to 0, but keep pixels IN the mask identical.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.object

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.object that implement ProviderAsStack

Modifier and Type	Class	Description
class	LevelPerObjectBase	Creates a channel with a level calculated for each object using various methods.
class	LevelPerObjectIndependently	Creates a channel with different threshold-levels for each object, calculating the level only from the histogram of the particular object.
class	LevelPerObjectNeighbors	Calculates a threshold-level for each object collectively based on other objects

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.score

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.score that implement ProviderAsStack

Modifier and Type	Class	Description
class	IdentifyObjects	Assigns a unique id number to each object.
class	ScoreObjects	Creates a channel by scoring objects based on a feature calculation.
class	ScoreVoxels	Assigns a score (a value indicating how probable something is) to each voxel

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Classes in org.anchoranalysis.plugin.image.bean.channel.provider.slice that implement ProviderAsStack

Modifier and Type	Class	Description
class	ExtractCenterSlice	Extracts the slice at the center (rounding down) of the range of z-stacks.
class	ExtractSliceRange	Extracts slices from sliceStart (inclusive) to sliceEnd (inclusive).
class	MaximumIntensityProjection	Creates a maximum intensity projection of a 3D Channel.
class	MeanIntensityProjection	Creates a mean intensity projection of a 3D Channel.
class	RepeatSlice	Creates a new channel with specific dimensions that repeatedly duplicates a slice from an existing channel

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.mask.provider

Classes in org.anchoranalysis.plugin.image.bean.mask.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	AllValuesOff	Creates a new mask of particular dimensionality where all values are off.
class	AllValuesOn	Creates a new mask of particular dimensionality where all values are on.
class	Duplicate	A provider that creates a duplicate of a given Mask.
class	FromChannelBase	Base-class for MaskProviders that accept a Channel as input.
class	FromDimensionsBase	Base class for MaskProviders that create a mask based on given dimensions.
class	Invert	Switches on voxels to off and vice-versa.
class	Reference	A provider that references an existing Mask by its identifier.
class	ScaleXY	Scales the mask in XY dimensions, but not in Z dimension.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.mask.provider.combine

Classes in org.anchoranalysis.plugin.image.bean.mask.provider.combine that implement ProviderAsStack

Modifier and Type	Class	Description
class	And	Outputs the logical operation and voxelwise on both masks, modifying {mask} with the result.
class	CombineBase	Base class for combining two masks.
class	IfHighLow	Outputs the logical operation iff first==HIGH and second==LOW then LOW voxelwise on both masks, modifying {mask} with the result.
class	Or	Outputs the logical operation or voxelwise on both masks, modifying {mask} with the result.
class	Xor	Outputs the logical operation xor (exclusive or) voxelwise on both masks, modifying {mask} with the result.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.mask.provider.convert

Classes in org.anchoranalysis.plugin.image.bean.mask.provider.convert that implement ProviderAsStack

Modifier and Type	Class	Description
class	FromChannel	Creates a mask from an existing channel, reusing the channel's buffer and considering all 0 values as off, and 255 values as on.
class	FromObjects	Creates a Mask from a collection of object-masks.
class	FromStackChannel	Creates a Mask from a specific channel in a stack.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.mask.provider.morphological

Classes in org.anchoranalysis.plugin.image.bean.mask.provider.morphological that implement ProviderAsStack

Modifier and Type	Class	Description
class	Box	Creates a Mask where all pixels are on within a box region.
class	Dilate	Performs a dilation morphological operation on BinaryVoxels.
class	Erode	Performs an erosion morphological operation on BinaryVoxels.
class	ExteriorContour	Finds the exterior outer contour for a Mask that forms its outline.
class	FitBoxToOnVoxels	Fits a box around the on voxels.
class	MorphologicalOperatorBase	Base class for performing morphological operations on BinaryVoxels.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.mask.provider.predicate

Classes in org.anchoranalysis.plugin.image.bean.mask.provider.predicate that implement ProviderAsStack

Modifier and Type	Class	Description
class	IfKeyValueCondition	The current mask is returned if a condition on key-values is satisfied otherwise maskElse is returned.
class	IfNotEmpty	The current mask is returned if it's non-empty (at least one on voxel) otherwise maskElse is returned.
class	IfObjectFilter	The current mask is returned if the mask (treated as an object) passed an object-filter, otherwise maskElse is returned.
class	IfPredicateBase	Base class which multiplexes between the current mask and an alternative depending if a condition is met.
class	IfStackExists	The current mask is a particular stack exists (at least one on voxel) otherwise maskElse is returned.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.mask.provider.segment

Classes in org.anchoranalysis.plugin.image.bean.mask.provider.segment that implement ProviderAsStack

Modifier and Type	Class	Description
class	SegmentChannel	Applies a BinarySegmentation algorithm to derive a mask from a channel
class	Threshold	Thresholds a channel to produce a mask, reusing (and modifying) the input-buffers of the channel if possible.

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.mask.provider.slice

Classes in org.anchoranalysis.plugin.image.bean.mask.provider.slice that implement ProviderAsStack

Modifier and Type	Class	Description
class	FlattenZ	Flattens a mask in the z-dimension, so it is 2D instead of 3D (like a maximum intensity projection).
class	RepeatSlice	Creates a new mask with specific dimensions that repeatedly duplicates a slice from an existing mask

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.object.provider.segment

Methods in org.anchoranalysis.plugin.image.bean.object.provider.segment that return ProviderAsStack

Modifier and Type	Method	Description
ProviderAsStack	SegmentStack.getStack()	The stack to segment

Methods in org.anchoranalysis.plugin.image.bean.object.provider.segment with parameters of type ProviderAsStack

Modifier and Type	Method	Description
void	SegmentStack.setStack(ProviderAsStack stack)	The stack to segment

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.stack.provider

Classes in org.anchoranalysis.plugin.image.bean.stack.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	Concatenate	Combines all the channels from one or more sources (stacks, channels etc.)
class	FromChannelOrMask	Creates a Stack from a Channel or Mask (reusing the voxel buffers).
class	FromInput	Finds the input-stack using a conventional name of input_image
class	Reference	Retrieves an existing stack.

Methods in org.anchoranalysis.plugin.image.bean.stack.provider that return types with arguments of type ProviderAsStack

Modifier and Type	Method	Description
List<ProviderAsStack>	Concatenate.getList()

Method parameters in org.anchoranalysis.plugin.image.bean.stack.provider with type arguments of type ProviderAsStack

Modifier and Type	Method	Description
void	Concatenate.setList(List<ProviderAsStack> list)

Uses of ProviderAsStack in org.anchoranalysis.plugin.image.bean.stack.provider.color

Classes in org.anchoranalysis.plugin.image.bean.stack.provider.color that implement ProviderAsStack

Modifier and Type	Class	Description
class	ColoredBase	Base class for providers that draw entities (an outline or filled) on a background.
class	ColoredBaseWithGenerator	Like ColoredBase but uses a generator to determine the colors for the objects.
class	ColoredMask	Draws a colored representation (outline or filled) of a ObjectMask on a background
class	ColoredObjects	Draws a colored representation (outline or filled) of an ObjectCollection on a background
class	ThreeChannels	Provides a Stack by combining up to three channels (red, green, blue) into an RGB image.
class	ThreeColoredObjects	Colors three collections of objects in RED, GREEN, BLUE channels on top of a background.

Methods in org.anchoranalysis.plugin.image.bean.stack.provider.color that return ProviderAsStack

Modifier and Type	Method	Description
ProviderAsStack	ColoredBase.getBackground()	The background.

Methods in org.anchoranalysis.plugin.image.bean.stack.provider.color with parameters of type ProviderAsStack

Modifier and Type	Method	Description
void	ColoredBase.setBackground(ProviderAsStack background)	The background.

Uses of ProviderAsStack in org.anchoranalysis.plugin.imagej.bean.channel.provider

Classes in org.anchoranalysis.plugin.imagej.bean.channel.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	BackgroundSubtractor	Subtracts background from a channel using ImageJ's BackgroundSubtracter.
class	WithFilterBase	A base class for applying ImageJ rank filters to channels.
class	WithRadiusBase	A ChannelProviderUnary with a 'radius' parameter.

Uses of ProviderAsStack in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter

Classes in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter that implement ProviderAsStack

Modifier and Type	Class	Description
class	EdgeFilterIJ	Applies an edge detection filter to each slice of a Channel independently using ImageJ's FIND_EDGES filter.
class	GaussianBlur2D	Applies a 2D Gaussian blur filter to each slice of a Channel independently.

Uses of ProviderAsStack in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments

Classes in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments that implement ProviderAsStack

Modifier and Type	Class	Description
class	MeanFilter2D	Applies a 2D mean filter to a channel using ImageJ's RankFilters.
class	VarianceFilter2D	Applies a 2D variance filter to a channel using ImageJ's RankFilters.

Uses of ProviderAsStack in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank

Classes in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank that implement ProviderAsStack

Modifier and Type	Class	Description
class	MedianFilter2D	Applies a 2D median filter to a channel using ImageJ's RankFilters.
class	MedianFilter3D	Applies a 3D median filter to a channel using a hybrid 3D median filter ImageJ plugin.

Uses of ProviderAsStack in org.anchoranalysis.plugin.imagej.bean.mask.provider

Classes in org.anchoranalysis.plugin.imagej.bean.mask.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	FillHoles	Fills holes in a mask, with options to skip holes touching the border or exceeding a maximum volume.
class	MorphologicalOperation	Applies an ImageJ (2D) morphological operation to each slice

Uses of ProviderAsStack in org.anchoranalysis.plugin.imagej.bean.stack.provider

Classes in org.anchoranalysis.plugin.imagej.bean.stack.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	MontageSlices	Creates a montage of slices from a stack.

Uses of ProviderAsStack in org.anchoranalysis.plugin.mpp.bean.stack.provider

Classes in org.anchoranalysis.plugin.mpp.bean.stack.provider that implement ProviderAsStack

Modifier and Type	Class	Description
class	ColoredMarks	Draws a colored representation (outline or filled) of an MarkCollection on a background

Uses of ProviderAsStack in org.anchoranalysis.plugin.opencv.bean.color

Classes in org.anchoranalysis.plugin.opencv.bean.color that implement ProviderAsStack

Modifier and Type	Class	Description
class	ColorConverterBase	Converts a RGB stack into another color space using OpenCV.
class	ConvertRGBToHSV	Converts a RGB image to the HSV color space.
class	ConvertRGBToLab	Converts a RGB image to the Lab color space.

Uses of ProviderAsStack in org.anchoranalysis.plugin.points.bean.convexhull

Classes in org.anchoranalysis.plugin.points.bean.convexhull that implement ProviderAsStack

Modifier and Type	Class	Description
class	ConvexHull2D	Sets particular voxels to high only if they exist on the convex-hull of the outline of a mask.
class	ConvexHull3D	Calculates a 3D convex hull from a binary mask.
class	ConvexHullBase	Base class for convex hull implementations.