Uses of Class
org.anchoranalysis.image.feature.bean.object.single.FeatureSingleObject

Packages that use FeatureSingleObject

Package	Description
org.anchoranalysis.image.feature.bean.object.single	Features that operate on a single ObjectMask.
org.anchoranalysis.plugin.image.feature.bean.object.single	Implementations of FeatureSingleObject.
org.anchoranalysis.plugin.image.feature.bean.object.single.border	Implementations of FeatureSingleObject that determine if an object lies at the border of an image.
org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox	Implementations of FeatureSingleObject that consider an object's bounding-box.
org.anchoranalysis.plugin.image.feature.bean.object.single.energy	Implementations of FeatureSingleObject that reference a particular Channel in the associated EnergyStack.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity	Implementations of FeatureSingleObject that measure an object's intensity on a corresponding Channel.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient	Implementations of FeatureSingleObject that measure an object's gradient from corresponding Channels storing the gradient.
org.anchoranalysis.plugin.image.feature.bean.object.single.moments	Implementations of FeatureSingleObject based on calculating image moments, with or without image intensity.
org.anchoranalysis.plugin.image.feature.bean.object.single.morphological	Implementations of FeatureSingleObject that implement morphological operations.
org.anchoranalysis.plugin.image.feature.bean.object.single.shape	Implementations of FeatureSingleObject that measure the shape of the ObjectMask.
org.anchoranalysis.plugin.image.feature.bean.object.single.shared	Implementations of FeatureSingleObject that use SharedObjects for calculations.
org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting	Implementations of FeatureSingleObject that use SharedObjects for calculations, and measure the degree of intersection between objects.
org.anchoranalysis.plugin.image.feature.bean.object.single.slice	Implementations of FeatureSingleObject that processes an object slice-by-slice in the z-dimension.
org.anchoranalysis.plugin.image.feature.bean.object.single.surface	Implementations of FeatureSingleObject that measures aspects of the surface of an ObjectMask.
org.anchoranalysis.plugin.points.bean.feature	Features related to points and fitting points to conics.

Uses of FeatureSingleObject in org.anchoranalysis.image.feature.bean.object.single

Subclasses of FeatureSingleObject in org.anchoranalysis.image.feature.bean.object.single

Modifier and Type	Class	Description
class	CenterOfGravity	Calculates the center of gravity of a single object along a specified axis.
class	NumberVoxels	Calculates the number of voxels in a single object.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single

Modifier and Type	Class	Description
class	ArbitraryInsidePoint	Calculates deterministically a point that is definitely inside the object-mask and outputs a selected axis value.
class	OutlineKernelBase	Base class for features that apply a kernel to the outline of an object.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.border

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.border

Modifier and Type	Class	Description
class	AtBorderBase	Base class for features that check if an object is at the border of an image.
class	AtBorderXY	Checks if an object's bounding box is at the border of the image in the XY plane.
class	AtBorderZ	Checks if an object's bounding box is at the border of the image in the Z dimension.
class	NumberVoxelsAtBorder	Calculates the number of voxels at the border of an object.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox

Modifier and Type	Class	Description
class	BoundingBoxAlongAxisBase	Base class for features that calculate a value along a specific axis of an object's bounding box.
class	BoundingBoxExtentAlongAxis	Calculates the extent of an object's bounding box along a specified axis.
class	BoundingBoxMaximumAlongAxis	Calculates the maximum coordinate of an object's bounding box along a specified axis.
class	BoundingBoxMinimumAlongAxis	Calculates the minimum coordinate of an object's bounding box along a specified axis.
class	BoundingBoxNumberVoxels	Calculates the number of voxels in the bounding box of an object.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.energy

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.energy

Modifier and Type	Class	Description
class	CountEqual	Counts the number of voxels in an object that have a specific intensity value in a channel.
class	NumberNeighboringVoxels	Calculates the number of voxels on the object that have a neighbor.
class	SpecificEnergyChannelBase	A base class for features that operate on a specific channel from the energy stack.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Modifier and Type	Class	Description
class	FeatureEnergyChannel	A feature that uses a channel from the energy-stack as identified by an index.
class	Intensity	Calculates a statistic from the intensity values covered by a single object-mask in a channel.
class	IntensityMeanMaxSlice	Calculates the maximum mean intensity across all slices of an object in a channel.
class	IntensityMeanShell	Constructs a 'shell' around an object by a number of dilation/erosion operations (not including the original object-mask) and measures the mean intensity of this shell
class	IntensityMeanShellBase	Constructs a shell around an object-mask using a standard dilation and erosion process.
class	IntensityMeanShellMaxSlice	Constructs a 'shell' around an object by a number of dilation/erosion operations (not including the original object-mask) and measures the mean intensity of this shell
class	TextureScore	From Page 727 from Lin et al (A Multi-Model Approach to Simultaneous Segmentation and Classification of Heterogeneous Populations of Cell Nuclei

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient

Modifier and Type	Class	Description
class	GradientMagnitude	Calculates the mean of the intensity-gradient defined by multiple Energy channels in a particular direction
class	GradientMeanForAxis	Calculates the mean of the intensity-gradient defined by multiple Energy channels in a particular direction
class	IntensityGradientBase	Base class for features that calculate intensity gradients from multiple channels.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.moments

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.moments

Modifier and Type	Class	Description
class	ImageMomentsBase	A base class for features that are calculated using image-moments.
class	PrincipalAxisEccentricity	Calculates the eccentricity of the Principal Axes (as defined by Image Moments).
class	PrincipalAxisLength	The length of a principal-axis (as defined by Image Moments).
class	PrincipalAxisOrientation	An element from orientation of a principal-axis (as defined by Image Moments).
class	RatioPrincipalAxisLength	Calculates the ratio of prinicpal-axis length using Image Moments.
class	SpecificAxisBase	A feature based on one specific principal-axis as identified by image moments.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological

Modifier and Type	Class	Description
class	DerivedObject	A base class for features that operate on a derived object mask and calculate a feature on it.
class	Erode	A feature that erodes an object mask and then calculates another feature on the eroded object.
class	NumberRemovedVoxelsAfterClosing	How many pixels are removed after a morphological closing operation on the object-mask.
class	Shell	Creates a shell around an ObjectMask by applying morphological operations.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.shape

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.shape

Modifier and Type	Class	Description
class	ObjectRadiusStandardDeviation	Calculates the standard deviation of distances from surface voxels to the centroid of an ObjectMask.
class	ShapeRegularityCenterSlice	Calculates the shape regularity of the center slice of an ObjectMask.
class	ShapeRegularityMaximumIntensityProjection	Calculates the shape regularity of the maximum intensity projection of an ObjectMask.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.shared

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.shared

Modifier and Type	Class	Description
class	PairedWithMask	Evaluates the object as a pair-feature together with the binary-mask from the shared objects.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting

Modifier and Type	Class	Description
class	FeatureIntersectingObjects	An abstract base class for features that calculate values based on intersecting objects.
class	FeatureIntersectingObjectsSingleElement	A feature that calculates a value based on intersecting objects, considering each intersecting object individually.
class	FeatureIntersectingObjectsThreshold	An abstract feature that calculates a value based on intersecting objects, considering each intersecting object individually and applying a threshold.
class	MaxFeatureIntersectingObjects	1.
class	MinFeatureIntersectingObjectsAboveThreshold	1.
class	NumberIntersectingObjects	A feature that calculates the number of objects intersecting with the input object.
class	NumberIntersectingObjectsAboveThreshold	1.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.slice

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.slice

Modifier and Type	Class	Description
class	MaximumNumberContourVoxelsOnSlice	Maximum number of voxels on any slice's contour (edge voxels) across all slices.
class	MaximumNumberVoxelsOnSlice	Maximum number of voxels in the object-mask across all slices.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.surface

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.image.feature.bean.object.single.surface

Modifier and Type	Class	Description
class	SurfaceNumberVoxelFaces	The number of voxel-faces along the surface (the faces of each voxel that touch outside)
class	SurfaceNumberVoxels	The number of voxels on the surface (all voxels on the exterior of the object)
class	SurfaceNumberVoxelsBase	A base class for features that calculate the number of voxels on the surface of an object.

Uses of FeatureSingleObject in org.anchoranalysis.plugin.points.bean.feature

Subclasses of FeatureSingleObject in org.anchoranalysis.plugin.points.bean.feature

Modifier and Type	Class	Description
class	AxisRatioEllipsoid	Calculates the axis ratio of an Ellipsoid.
class	EllipsoidBase	Base class for features that calculate properties of an Ellipsoid fitted to an object.
class	Ellipsoidicity	Calculates the ellipsoidicity of an object by fitting an Ellipsoid to it.
class	Ellipticity	Calculates the ellipticity of an ObjectMask (on the center of gravity slice if it's a z-stack).