Uses of Class
org.anchoranalysis.io.input.bean.InputManager

Packages that use InputManager

Package	Description
org.anchoranalysis.annotation.io.bean	Beans related to reading / writing / specifying annotations.
org.anchoranalysis.experiment.bean.io	Generic experiments that handle input and output in structured ways.
org.anchoranalysis.experiment.io	Interfaces for replacing attributes of an experiment: input, output, task etc.
org.anchoranalysis.image.io.bean.stack.reader	Bean classes for reading raster-files from the filesystem.
org.anchoranalysis.io.input.bean	Beans related to collecting inputs from the file-system for an experiment.
org.anchoranalysis.mpp.io.bean.input	Beans for reading data structures related to marked point processes from the file system.
org.anchoranalysis.plugin.annotation.bean.comparison	Task to compare a set of annotations to a segmentation or another set of annotations.
org.anchoranalysis.plugin.io.bean.file.group	Grouping files together so that they collectively represent a single entity.
org.anchoranalysis.plugin.io.bean.input	Implementations of InputManager.
org.anchoranalysis.plugin.io.bean.input.channel	InputManagers that accept a set of named-channels.
org.anchoranalysis.plugin.io.bean.input.files	InputManagers that accept a set of named-files.
org.anchoranalysis.plugin.io.bean.input.filter	Implementations of InputManager that filter inputs.
org.anchoranalysis.plugin.io.bean.input.stack	Implementations of InputManager that process Stacks.

Uses of InputManager in org.anchoranalysis.annotation.io.bean

Subclasses of InputManager in org.anchoranalysis.annotation.io.bean

Modifier and Type	Class	Description
class	AnnotationInputManager<T extends ProvidesStackInput,S extends AnnotatorStrategy>	An InputManager that provides annotations corresponding to images.

Methods in org.anchoranalysis.annotation.io.bean that return InputManager

Modifier and Type	Method	Description
InputManager<T>	AnnotationInputManager.getInput()	The inputs to be annotated.

Methods in org.anchoranalysis.annotation.io.bean with parameters of type InputManager

Modifier and Type	Method	Description
void	AnnotationInputManager.setInput(InputManager<T> input)	The inputs to be annotated.

Uses of InputManager in org.anchoranalysis.experiment.bean.io

Methods in org.anchoranalysis.experiment.bean.io that return InputManager

Modifier and Type	Method	Description
InputManager<T>	InputOutputExperiment.getInput()	The input-manager to specify where/which/how necessary inputs for the experiment occur.

Methods in org.anchoranalysis.experiment.bean.io with parameters of type InputManager

Modifier and Type	Method	Description
void	InputOutputExperiment.replaceInputManager(InputManager<T> inputManager)
void	InputOutputExperiment.setInput(InputManager<T> input)	The input-manager to specify where/which/how necessary inputs for the experiment occur.

Uses of InputManager in org.anchoranalysis.experiment.io

Methods in org.anchoranalysis.experiment.io with parameters of type InputManager

Modifier and Type	Method	Description
void	ReplaceInputManager.replaceInputManager(InputManager<T> inputManager)	Replace the existing @{link InputManager} associated with this class.

Uses of InputManager in org.anchoranalysis.image.io.bean.stack.reader

Subclasses of InputManager in org.anchoranalysis.image.io.bean.stack.reader

Modifier and Type	Class	Description
class	InputManagerWithStackReader<T extends InputFromManager>	Extends an InputManager to add a StackReader bean property.

Uses of InputManager in org.anchoranalysis.io.input.bean

Subclasses of InputManager in org.anchoranalysis.io.input.bean

Modifier and Type	Class	Description
class	InputManagerUnary<T extends InputFromManager>	Base class for an InputManager that delegates to another InputManager with the same input-type.

Methods in org.anchoranalysis.io.input.bean that return InputManager

Modifier and Type	Method	Description
InputManager<T>	InputManagerUnary.getInput()	The delegate input-manager which will be circumstantially called by the current input-manager.

Methods in org.anchoranalysis.io.input.bean with parameters of type InputManager

Modifier and Type	Method	Description
void	InputManagerUnary.setInput(InputManager<T> input)	The delegate input-manager which will be circumstantially called by the current input-manager.

Uses of InputManager in org.anchoranalysis.mpp.io.bean.input

Subclasses of InputManager in org.anchoranalysis.mpp.io.bean.input

Modifier and Type	Class	Description
class	MultiInputManager	Manages input for MultiInput objects, combining various input sources.

Methods in org.anchoranalysis.mpp.io.bean.input that return InputManager

Modifier and Type	Method	Description
InputManager<? extends ProvidesStackInput>	MultiInputManager.getInput()	The input manager for the main stack.

Methods in org.anchoranalysis.mpp.io.bean.input with parameters of type InputManager

Modifier and Type	Method	Description
void	MultiInputManager.setInput(InputManager<? extends ProvidesStackInput> input)	The input manager for the main stack.

Constructors in org.anchoranalysis.mpp.io.bean.input with parameters of type InputManager

Modifier	Constructor	Description
	MultiInputManager(String inputName, InputManager<? extends ProvidesStackInput> input)	Creates a new MultiInputManager with specified input name and input manager.

Uses of InputManager in org.anchoranalysis.plugin.annotation.bean.comparison

Subclasses of InputManager in org.anchoranalysis.plugin.annotation.bean.comparison

Modifier and Type	Class	Description
class	AnnotationComparisonInputManager<T extends InputFromManager>	An input manager for annotation comparison that extends InputManagerWithStackReader.

Methods in org.anchoranalysis.plugin.annotation.bean.comparison that return InputManager

Modifier and Type	Method	Description
InputManager<T>	AnnotationComparisonInputManager.getInput()	The input manager for the base input type T.

Methods in org.anchoranalysis.plugin.annotation.bean.comparison with parameters of type InputManager

Modifier and Type	Method	Description
void	AnnotationComparisonInputManager.setInput(InputManager<T> input)	The input manager for the base input type T.

Uses of InputManager in org.anchoranalysis.plugin.io.bean.file.group

Subclasses of InputManager in org.anchoranalysis.plugin.io.bean.file.group

Modifier and Type	Class	Description
class	GroupFiles	An InputManagerWithStackReader that can unify separate images in separate files to form a single Stack.

Uses of InputManager in org.anchoranalysis.plugin.io.bean.input

Subclasses of InputManager in org.anchoranalysis.plugin.io.bean.input

Modifier and Type	Class	Description
class	BranchIfDebug<T extends InputFromManager>	Uses one input-manager normally, but a different one if in debug mode.
class	Concatenate<T extends InputFromManager>	Concatenates the inputs from multiple InputManagers that all provide the same input-type.
class	Exclude<T extends InputFromManager>	Excludes all inputs whose identifiers match a regular expression.
class	Limit<T extends InputFromManager>	Limits the number of input-objects to a certain hard-maximum
class	LimitIfRequested<T extends InputFromManager>	Like Limit if it is requested in the InputContextParameters, makes no change to the inputs.
class	Shuffle<T extends InputFromManager>	Randomly shuffles the order of the inputs.
class	ShuffleIfRequested<T extends InputFromManager>	Like Shuffle if requested in the InputContextParameters otherwise makes no change to the inputs.
class	SortAlphabetically<T extends InputFromManager>	Sorts the input-items in alphabetical order of their input-name.

Methods in org.anchoranalysis.plugin.io.bean.input that return InputManager

Modifier and Type	Method	Description
InputManager<T>	BranchIfDebug.getInputDebug()	If defined, this provides an input to the manager when in debug-mode, rather than than otherwise inputs.

Methods in org.anchoranalysis.plugin.io.bean.input that return types with arguments of type InputManager

Modifier and Type	Method	Description
List<InputManager<T>>	Concatenate.getList()	The list of InputManagers that will be concatenated.

Methods in org.anchoranalysis.plugin.io.bean.input with parameters of type InputManager

Modifier and Type	Method	Description
void	BranchIfDebug.setInputDebug(InputManager<T> inputDebug)	If defined, this provides an input to the manager when in debug-mode, rather than than otherwise inputs.

Method parameters in org.anchoranalysis.plugin.io.bean.input with type arguments of type InputManager

Modifier and Type	Method	Description
void	Concatenate.setList(List<InputManager<T>> list)	The list of InputManagers that will be concatenated.

Uses of InputManager in org.anchoranalysis.plugin.io.bean.input.channel

Subclasses of InputManager in org.anchoranalysis.plugin.io.bean.input.channel

Modifier and Type	Class	Description
class	NamedChannels	An image viewed as a set of channels, each with a unique name.
class	NamedChannelsAppend
class	NamedChannelsBase	Parent for all the NamedChannels classes

Methods in org.anchoranalysis.plugin.io.bean.input.channel that return InputManager

Modifier and Type	Method	Description
InputManager<FileInput>	NamedChannels.getFileInput()
InputManager<NamedChannelsInputPart>	NamedChannelsAppend.getInput()

Methods in org.anchoranalysis.plugin.io.bean.input.channel with parameters of type InputManager

Modifier and Type	Method	Description
void	NamedChannels.setFileInput(InputManager<FileInput> fileInput)
void	NamedChannelsAppend.setInput(InputManager<NamedChannelsInputPart> input)

Uses of InputManager in org.anchoranalysis.plugin.io.bean.input.files

Subclasses of InputManager in org.anchoranalysis.plugin.io.bean.input.files

Modifier and Type	Class	Description
class	NamedFiles	Implementation of NamedFilesBase that is an InputManager that accepts FileInput as input and derives a name.
class	NamedFilesBase<T extends InputFromManager>	Base class for an InputManager that produces inputs that are created from a NamedFile.
class	NamedFilesWithDirectory	Like NamedFiles but rather accepts a FileWithDirectoryInput rather than a FileInput.

Uses of InputManager in org.anchoranalysis.plugin.io.bean.input.filter

Subclasses of InputManager in org.anchoranalysis.plugin.io.bean.input.filter

Modifier and Type	Class	Description
class	FilterCSVColumn<T extends InputFromManager>	Finds a CSV file with the names of an input as the first-column.
class	FilterDescriptiveName<T extends InputFromManager>	Filters all the input objects for only those with certain types of descriptive-names.
class	FilterIfDebug<T extends InputFromManager>	Filters a list of inputs when in debug-mode

Uses of InputManager in org.anchoranalysis.plugin.io.bean.input.stack

Subclasses of InputManager in org.anchoranalysis.plugin.io.bean.input.stack

Modifier and Type	Class	Description
class	ConvertNamedChannelsToStack	Manager that converts (one channel) NamedChannelsInput to StackSequenceInput.
class	Stacks	An InputManager where each file provides one or more Stacks.

Methods in org.anchoranalysis.plugin.io.bean.input.stack that return InputManager

Modifier and Type	Method	Description
InputManager<FileInput>	Stacks.getFileInput()
InputManager<NamedChannelsInput>	ConvertNamedChannelsToStack.getInput()

Methods in org.anchoranalysis.plugin.io.bean.input.stack with parameters of type InputManager

Modifier and Type	Method	Description
void	Stacks.setFileInput(InputManager<FileInput> fileInput)
void	ConvertNamedChannelsToStack.setInput(InputManager<NamedChannelsInput> input)

Constructors in org.anchoranalysis.plugin.io.bean.input.stack with parameters of type InputManager

Modifier	Constructor	Description
	Stacks(InputManager<FileInput> fileInput)