Package | Description |
---|---|
org.anchoranalysis.annotation.io.bean |
Beans related to reading / writing / specifying annotations.
|
org.anchoranalysis.experiment.bean.io |
Generic experiments that handle input and output in structured ways.
|
org.anchoranalysis.experiment.io |
Interfaces for replacing attributes of an experiment: input, output, task etc.
|
org.anchoranalysis.image.io.bean.stack.reader |
Bean classes for reading raster-files from the filesystem.
|
org.anchoranalysis.io.input.bean |
Beans related to collecting inputs from the file-system for an experiment.
|
org.anchoranalysis.mpp.io.bean.input |
Beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.plugin.annotation.bean.comparison |
Task to compare a set of annotations to a segmentation or another set of annotations.
|
org.anchoranalysis.plugin.io.bean.file.group |
Grouping files together so that they collectively represent a single entity.
|
org.anchoranalysis.plugin.io.bean.input |
Implementations of
InputManager . |
org.anchoranalysis.plugin.io.bean.input.channel |
InputManager s that accept a set of
named-channels. |
org.anchoranalysis.plugin.io.bean.input.files |
InputManager s that accept a set of named-files. |
org.anchoranalysis.plugin.io.bean.input.filter |
Implementations of
InputManager that filter inputs. |
org.anchoranalysis.plugin.io.bean.input.stack |
Implementations of
InputManager that process Stack s. |
org.anchoranalysis.plugin.mpp.experiment.bean.objects |
Tasks involving
ObjectMask s. |
org.anchoranalysis.plugin.quick.bean.experiment |
Quickly defining experiments via several assumptions, including particular file-paths.
|
org.anchoranalysis.plugin.quick.bean.input |
Specifying inputs when quickly defining an experiment.
|
org.anchoranalysis.plugin.quick.bean.structure |
Specifying a structure of subdirectories and filenames when quickly defining an experiment.
|
Modifier and Type | Class and Description |
---|---|
class |
AnnotationInputManager<T extends ProvidesStackInput,S extends AnnotatorStrategy>
An
InputManager that provides annotations corresponding to images. |
Modifier and Type | Method and Description |
---|---|
InputManager<T> |
AnnotationInputManager.getInput()
The inputs to be annotated.
|
Modifier and Type | Method and Description |
---|---|
void |
AnnotationInputManager.setInput(InputManager<T> input)
The inputs to be annotated.
|
Modifier and Type | Method and Description |
---|---|
InputManager<T> |
InputOutputExperiment.getInput()
The input-manager to specify where/which/how necessary inputs for the experiment occur.
|
Modifier and Type | Method and Description |
---|---|
void |
InputOutputExperiment.replaceInputManager(InputManager<T> inputManager) |
void |
InputOutputExperiment.setInput(InputManager<T> input)
The input-manager to specify where/which/how necessary inputs for the experiment occur.
|
Modifier and Type | Method and Description |
---|---|
void |
ReplaceInputManager.replaceInputManager(InputManager<T> inputManager)
Replace the existing @{link InputManager} associated with this class.
|
Modifier and Type | Class and Description |
---|---|
class |
InputManagerWithStackReader<T extends InputFromManager>
Extends an
InputManager to add a StackReader bean property. |
Modifier and Type | Class and Description |
---|---|
class |
InputManagerUnary<T extends InputFromManager>
Base class for an
InputManager that delegates to another InputManager with the
same input-type. |
Modifier and Type | Method and Description |
---|---|
InputManager<T> |
InputManagerUnary.getInput()
The delegate input-manager which will be circumstantially called by the current
input-manager.
|
Modifier and Type | Method and Description |
---|---|
void |
InputManagerUnary.setInput(InputManager<T> input)
The delegate input-manager which will be circumstantially called by the current
input-manager.
|
Modifier and Type | Class and Description |
---|---|
class |
MultiInputManager |
Modifier and Type | Method and Description |
---|---|
InputManager<? extends ProvidesStackInput> |
MultiInputManager.getInput() |
Modifier and Type | Method and Description |
---|---|
void |
MultiInputManager.setInput(InputManager<? extends ProvidesStackInput> input) |
Constructor and Description |
---|
MultiInputManager(String inputName,
InputManager<? extends ProvidesStackInput> input) |
Modifier and Type | Class and Description |
---|---|
class |
AnnotationComparisonInputManager<T extends InputFromManager> |
Modifier and Type | Method and Description |
---|---|
InputManager<T> |
AnnotationComparisonInputManager.getInput() |
Modifier and Type | Method and Description |
---|---|
void |
AnnotationComparisonInputManager.setInput(InputManager<T> input) |
Modifier and Type | Class and Description |
---|---|
class |
GroupFiles
An
InputManagerWithStackReader that can unify separate images in separate files to form a
single Stack . |
Modifier and Type | Class and Description |
---|---|
class |
BranchIfDebug<T extends InputFromManager>
Uses one input-manager normally, but a different one if in debug mode.
|
class |
Concatenate<T extends InputFromManager>
Concatenates the inputs from multiple
InputManager s that all provide the same input-type. |
class |
Exclude<T extends InputFromManager>
Excludes all inputs whose identifiers match a regular expression.
|
class |
Limit<T extends InputFromManager>
Limits the number of input-objects to a certain hard-maximum
|
class |
LimitIfRequested<T extends InputFromManager>
Like
Limit if it is requested in the InputContextParameters , makes no change to
the inputs. |
class |
Shuffle<T extends InputFromManager>
Randomly shuffles the order of the inputs.
|
class |
ShuffleIfRequested<T extends InputFromManager>
Like
Shuffle if requested in the InputContextParameters otherwise makes no change
to the inputs. |
class |
SortAlphabetically<T extends InputFromManager>
Sorts the input-items in alphabetical order of their input-name.
|
Modifier and Type | Method and Description |
---|---|
InputManager<T> |
BranchIfDebug.getInputDebug()
If defined, this provides an input to the manager when in debug-mode, rather than than
otherwise
inputs . |
Modifier and Type | Method and Description |
---|---|
List<InputManager<T>> |
Concatenate.getList()
The list of
InputManager s that will be concatenated. |
Modifier and Type | Method and Description |
---|---|
void |
BranchIfDebug.setInputDebug(InputManager<T> inputDebug)
If defined, this provides an input to the manager when in debug-mode, rather than than
otherwise
inputs . |
Modifier and Type | Method and Description |
---|---|
void |
Concatenate.setList(List<InputManager<T>> list)
The list of
InputManager s that will be concatenated. |
Modifier and Type | Class and Description |
---|---|
class |
NamedChannels
An image viewed as a set of channels, each with a unique name.
|
class |
NamedChannelsAppend |
class |
NamedChannelsBase
Parent for all the
NamedChannels classes |
Modifier and Type | Method and Description |
---|---|
InputManager<FileInput> |
NamedChannels.getFileInput() |
InputManager<NamedChannelsInputPart> |
NamedChannelsAppend.getInput() |
Modifier and Type | Method and Description |
---|---|
void |
NamedChannels.setFileInput(InputManager<FileInput> fileInput) |
void |
NamedChannelsAppend.setInput(InputManager<NamedChannelsInputPart> input) |
Modifier and Type | Class and Description |
---|---|
class |
NamedFiles
Implementation of
NamedFilesBase that is an InputManager that accepts FileInput as input and derives a name. |
class |
NamedFilesBase<T extends InputFromManager>
Base class for an
InputManager that produces inputs that are created from a NamedFile . |
class |
NamedFilesWithDirectory
|
Modifier and Type | Class and Description |
---|---|
class |
FilterCSVColumn<T extends InputFromManager>
Finds a CSV file with the names of an input as the first-column.
|
class |
FilterDescriptiveName<T extends InputFromManager>
Filters all the input objects for only those with certain types of descriptive-names.
|
class |
FilterIfDebug<T extends InputFromManager>
Filters a list of inputs when in debug-mode
|
Modifier and Type | Class and Description |
---|---|
class |
ConvertNamedChannelsToStack
Manager that converts (one channel)
NamedChannelsInput to StackSequenceInput . |
class |
Stacks
An
InputManager where each file provides one or more
Stack s. |
Modifier and Type | Method and Description |
---|---|
InputManager<FileInput> |
Stacks.getFileInput() |
InputManager<NamedChannelsInput> |
ConvertNamedChannelsToStack.getInput() |
Modifier and Type | Method and Description |
---|---|
void |
Stacks.setFileInput(InputManager<FileInput> fileInput) |
void |
ConvertNamedChannelsToStack.setInput(InputManager<NamedChannelsInput> input) |
Constructor and Description |
---|
Stacks(InputManager<FileInput> fileInput) |
Modifier and Type | Class and Description |
---|---|
class |
FromCSVInputManager |
Modifier and Type | Method and Description |
---|---|
void |
QuickMultiDatasetExperiment.replaceInputManager(InputManager<T> inputManager) |
Modifier and Type | Class and Description |
---|---|
class |
MultiInputManagerQuick
A multi-input manager that makes various assumptions, so it can be more quickly specified.
|
class |
NamedChannelsQuick
A particular type of NamedChannels which allows easier input of data, making several assumptions.
|
class |
QuickBase<T extends InputFromManager>
A base for quick managers that make various assumptions about file-structure.
|
Modifier and Type | Method and Description |
---|---|
protected InputManager<FileInput> |
QuickBase.fileInputManager() |
Modifier and Type | Method and Description |
---|---|
void |
QuickMultiDatasetStructuredExperiment.replaceInputManager(InputManager<T> inputManager) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.