Package | Description |
---|---|
org.anchoranalysis.annotation.io.bean |
Beans related to reading / writing / specifying annotations.
|
org.anchoranalysis.io.input.bean |
Beans related to collecting inputs from the file-system for an experiment.
|
org.anchoranalysis.io.input.bean.files |
Methods to provide a collection of
File s. |
org.anchoranalysis.io.input.bean.path.matcher |
Beans to find a subset of files that match a particular conditions on their paths.
|
org.anchoranalysis.mpp.io.bean.input |
Beans for reading data structures related to marked point processes from the file system.
|
org.anchoranalysis.plugin.annotation.bean.comparison |
Task to compare a set of annotations to a segmentation or another set of annotations.
|
org.anchoranalysis.plugin.annotation.bean.file |
FilesProvider s for providing annotations. |
org.anchoranalysis.plugin.io.bean.file.group |
Grouping files together so that they collectively represent a single entity.
|
org.anchoranalysis.plugin.io.bean.file.provider |
Implementations of
FilesProvider . |
org.anchoranalysis.plugin.io.bean.input |
Implementations of
InputManager . |
org.anchoranalysis.plugin.io.bean.input.channel |
InputManager s that accept a set of
named-channels. |
org.anchoranalysis.plugin.io.bean.input.files |
InputManager s that accept a set of named-files. |
org.anchoranalysis.plugin.io.bean.input.files.provider |
Implementations of
FilesProvider . |
org.anchoranalysis.plugin.io.bean.input.filter |
Implementations of
InputManager that filter inputs. |
org.anchoranalysis.plugin.io.bean.input.stack |
Implementations of
InputManager that process Stack s. |
org.anchoranalysis.plugin.mpp.experiment.bean.objects |
Tasks involving
ObjectMask s. |
org.anchoranalysis.plugin.quick.bean.input |
Specifying inputs when quickly defining an experiment.
|
org.anchoranalysis.plugin.quick.bean.structure |
Specifying a structure of subdirectories and filenames when quickly defining an experiment.
|
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<AnnotationWithStrategy<S>> |
AnnotationInputManager.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<T> |
InputManagerUnary.inputs(InputManagerParameters parameters) |
abstract InputsWithDirectory<T> |
InputManager.inputs(InputManagerParameters parameters)
Creates a list of inputs given particular parameters.
|
protected abstract InputsWithDirectory<T> |
InputManagerUnary.inputsFromDelegate(InputsWithDirectory<T> fromDelegate,
InputManagerParameters parameters)
Calculates the inputs to return given the inputs from the delegate.
|
Modifier and Type | Method and Description |
---|---|
List<File> |
SpecificPathList.create(InputManagerParameters parameters) |
abstract List<File> |
FilesProvider.create(InputManagerParameters parameters)
Creates or provides a list of files.
|
List<File> |
FilesProviderWithDirectory.create(InputManagerParameters parameters) |
List<File> |
FilesProviderUnary.create(InputManagerParameters parameters) |
List<File> |
FilesProviderWithDirectoryUnary.matchingFilesForDirectory(Path directory,
InputManagerParameters parameters) |
List<File> |
SearchDirectory.matchingFilesForDirectory(Path directory,
InputManagerParameters parameters) |
List<File> |
SingleFile.matchingFilesForDirectory(Path directory,
InputManagerParameters parameters) |
abstract List<File> |
FilesProviderWithDirectory.matchingFilesForDirectory(Path directory,
InputManagerParameters parameters)
The matching files for this provider that exist in a particular directory.
|
Modifier and Type | Method and Description |
---|---|
List<File> |
FilePathMatcher.matchingFiles(Path directory,
boolean recursive,
boolean ignoreHidden,
boolean acceptDirectoryErrors,
Optional<Integer> maxDirectoryDepth,
Optional<InputManagerParameters> parameters)
Finds a collection of files that match particular conditions on their paths.
|
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<MultiInput> |
MultiInputManager.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<AnnotationComparisonInput<T>> |
AnnotationComparisonInputManager.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
List<File> |
FromAnnotations.create(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<NamedChannelsInput> |
GroupFiles.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
List<File> |
Rooted.create(InputManagerParameters parameters) |
List<File> |
Combine.create(InputManagerParameters parameters) |
List<File> |
FileSetFromStringSet.matchingFilesForDirectory(Path directory,
InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<NamedChannelsInputPart> |
NamedChannelsAppend.inputs(InputManagerParameters parameters) |
InputsWithDirectory<NamedChannelsInputPart> |
NamedChannels.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
protected InputsWithDirectory<T> |
NamedFilesBase.createInputsFromFiles(FilesProvider files,
InputManagerParameters parameters,
java.util.function.Function<NamedFile,T> mapToInput)
Creates a list of inputs from a
FilesProvider which together with the namer
can create the inputs. |
InputsWithDirectory<FileInput> |
NamedFiles.inputs(InputManagerParameters parameters) |
InputsWithDirectory<FileWithDirectoryInput> |
NamedFilesWithDirectory.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
List<File> |
DirectoryDepth.matchingFilesForDirectory(Path directory,
InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
protected InputsWithDirectory<T> |
FilterCSVColumn.inputsFromDelegate(InputsWithDirectory<T> fromDelegate,
InputManagerParameters parameters) |
protected InputsWithDirectory<T> |
FilterIfDebug.inputsFromDelegate(InputsWithDirectory<T> fromDelegate,
InputManagerParameters parameters) |
protected InputsWithDirectory<T> |
FilterDescriptiveName.inputsFromDelegate(InputsWithDirectory<T> fromDelegate,
InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<StackSequenceInput> |
ConvertNamedChannelsToStack.inputs(InputManagerParameters parameters) |
InputsWithDirectory<StackSequenceInput> |
Stacks.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<FromCSVInput> |
FromCSVInputManager.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
InputsWithDirectory<MultiInput> |
MultiInputManagerQuick.inputs(InputManagerParameters parameters) |
InputsWithDirectory<NamedChannelsInputPart> |
NamedChannelsQuick.inputs(InputManagerParameters parameters) |
Modifier and Type | Method and Description |
---|---|
List<File> |
ExperimentResultsExperimentStructure.create(InputManagerParameters parameters) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.