Uses of Class
org.anchoranalysis.io.input.bean.InputManagerParameters

Packages that use InputManagerParameters

Package	Description
org.anchoranalysis.annotation.io.bean	Beans related to reading / writing / specifying annotations.
org.anchoranalysis.io.input.bean	Beans related to collecting inputs from the file-system for an experiment.
org.anchoranalysis.io.input.bean.files	Methods to provide a collection of Files.
org.anchoranalysis.mpp.io.bean.input	Beans for reading data structures related to marked point processes from the file system.
org.anchoranalysis.plugin.annotation.bean.comparison	Task to compare a set of annotations to a segmentation or another set of annotations.
org.anchoranalysis.plugin.annotation.bean.file	FilesProviders for providing annotations.
org.anchoranalysis.plugin.io.bean.file.group	Grouping files together so that they collectively represent a single entity.
org.anchoranalysis.plugin.io.bean.file.provider	Implementations of FilesProvider.
org.anchoranalysis.plugin.io.bean.input	Implementations of InputManager.
org.anchoranalysis.plugin.io.bean.input.channel	InputManagers that accept a set of named-channels.
org.anchoranalysis.plugin.io.bean.input.files	InputManagers that accept a set of named-files.
org.anchoranalysis.plugin.io.bean.input.files.provider	Implementations of FilesProvider.
org.anchoranalysis.plugin.io.bean.input.filter	Implementations of InputManager that filter inputs.
org.anchoranalysis.plugin.io.bean.input.stack	Implementations of InputManager that process Stacks.

Uses of InputManagerParameters in org.anchoranalysis.annotation.io.bean

Methods in org.anchoranalysis.annotation.io.bean with parameters of type InputManagerParameters

Modifier and Type	Method	Description
InputsWithDirectory<AnnotationWithStrategy<S>>	AnnotationInputManager.inputs(InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.io.input.bean

Methods in org.anchoranalysis.io.input.bean with parameters of type InputManagerParameters

Modifier and Type	Method	Description
abstract InputsWithDirectory<T>	InputManager.inputs(InputManagerParameters parameters)	Creates a list of inputs given particular parameters.
InputsWithDirectory<T>	InputManagerUnary.inputs(InputManagerParameters parameters)
protected abstract InputsWithDirectory<T>	InputManagerUnary.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)	Calculates the inputs to return given the inputs from the delegate.

Uses of InputManagerParameters in org.anchoranalysis.io.input.bean.files

Methods in org.anchoranalysis.io.input.bean.files with parameters of type InputManagerParameters

Modifier and Type	Method	Description
abstract List<File>	FilesProvider.create(InputManagerParameters parameters)	Creates or provides a list of files.
List<File>	FilesProviderUnary.create(InputManagerParameters parameters)
final List<File>	FilesProviderWithDirectory.create(InputManagerParameters parameters)
List<File>	SpecificPathList.create(InputManagerParameters parameters)
abstract List<File>	FilesProviderWithDirectory.matchingFilesForDirectory(Path directory, InputManagerParameters parameters)	The matching files for this provider that exist in a particular directory.
List<File>	FilesProviderWithDirectoryUnary.matchingFilesForDirectory(Path directory, InputManagerParameters parameters)
List<File>	SearchDirectory.matchingFilesForDirectory(Path directory, InputManagerParameters parameters)
List<File>	SingleFile.matchingFilesForDirectory(Path directory, InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.mpp.io.bean.input

Methods in org.anchoranalysis.mpp.io.bean.input with parameters of type InputManagerParameters

Modifier and Type	Method	Description
InputsWithDirectory<MultiInput>	MultiInputManager.inputs(InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.annotation.bean.comparison

Methods in org.anchoranalysis.plugin.annotation.bean.comparison with parameters of type InputManagerParameters

Modifier and Type	Method	Description
InputsWithDirectory<AnnotationComparisonInput<T>>	AnnotationComparisonInputManager.inputs(InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.annotation.bean.file

Methods in org.anchoranalysis.plugin.annotation.bean.file with parameters of type InputManagerParameters

Modifier and Type	Method	Description
List<File>	FromAnnotations.create(InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.file.group

Methods in org.anchoranalysis.plugin.io.bean.file.group with parameters of type InputManagerParameters

Modifier and Type	Method	Description
InputsWithDirectory<NamedChannelsInput>	GroupFiles.inputs(InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.file.provider

Methods in org.anchoranalysis.plugin.io.bean.file.provider with parameters of type InputManagerParameters

Modifier and Type	Method	Description
List<File>	Combine.create(InputManagerParameters parameters)
List<File>	Rooted.create(InputManagerParameters parameters)
List<File>	FileSetFromStringSet.matchingFilesForDirectory(Path directory, InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.input

Methods in org.anchoranalysis.plugin.io.bean.input with parameters of type InputManagerParameters

Modifier and Type	Method	Description
InputsWithDirectory<T>	Concatenate.inputs(InputManagerParameters parameters)
protected InputsWithDirectory<T>	BranchIfDebug.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Exclude.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Limit.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	LimitIfRequested.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	Shuffle.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	ShuffleIfRequested.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	SortAlphabetically.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.input.channel

Methods in org.anchoranalysis.plugin.io.bean.input.channel with parameters of type InputManagerParameters

Modifier and Type	Method	Description
InputsWithDirectory<NamedChannelsInputPart>	NamedChannels.inputs(InputManagerParameters parameters)
InputsWithDirectory<NamedChannelsInputPart>	NamedChannelsAppend.inputs(InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.input.files

Methods in org.anchoranalysis.plugin.io.bean.input.files with parameters of type InputManagerParameters

Modifier and Type	Method	Description
protected InputsWithDirectory<T>	NamedFilesBase.createInputsFromFiles(FilesProvider files, InputManagerParameters parameters, Function<NamedFile,T> mapToInput)	Creates a list of inputs from a FilesProvider which together with the namer can create the inputs.
InputsWithDirectory<FileInput>	NamedFiles.inputs(InputManagerParameters parameters)
InputsWithDirectory<FileWithDirectoryInput>	NamedFilesWithDirectory.inputs(InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.input.files.provider

Methods in org.anchoranalysis.plugin.io.bean.input.files.provider with parameters of type InputManagerParameters

Modifier and Type	Method	Description
List<File>	DirectoryDepth.matchingFilesForDirectory(Path directory, InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.input.filter

Methods in org.anchoranalysis.plugin.io.bean.input.filter with parameters of type InputManagerParameters

Modifier and Type	Method	Description
protected InputsWithDirectory<T>	FilterCSVColumn.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	FilterDescriptiveName.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)
protected InputsWithDirectory<T>	FilterIfDebug.inputsFromDelegate(InputsWithDirectory<T> fromDelegate, InputManagerParameters parameters)

Uses of InputManagerParameters in org.anchoranalysis.plugin.io.bean.input.stack

Methods in org.anchoranalysis.plugin.io.bean.input.stack with parameters of type InputManagerParameters

Modifier and Type	Method	Description
InputsWithDirectory<StackSequenceInput>	ConvertNamedChannelsToStack.inputs(InputManagerParameters parameters)
InputsWithDirectory<StackSequenceInput>	Stacks.inputs(InputManagerParameters parameters)