Package | Description |
---|---|
org.anchoranalysis.image.bean.nonbean.init |
Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
|
org.anchoranalysis.image.bean.segment.binary |
Base classes to perform binary-segmentation.
|
org.anchoranalysis.plugin.image.bean.mask.provider.segment | |
org.anchoranalysis.plugin.image.bean.object.provider.segment |
Implementations of
ObjectCollectionProvider
involving segmentation. |
org.anchoranalysis.plugin.image.bean.object.segment.channel |
Implementations of
SegmentChannelIntoObjects . |
org.anchoranalysis.plugin.image.bean.segment.binary |
Implementations of
BinarySegmentation . |
org.anchoranalysis.plugin.mpp.bean.segment.binary |
Implementations of
BinarySegmentation
involving Mark or related classes. |
Modifier and Type | Method and Description |
---|---|
NamedProviderStore<BinarySegmentation> |
ImageInitialization.binarySegmentations()
A collection of
BinarySegmentation s, indexed by name. |
Modifier and Type | Class and Description |
---|---|
class |
BinarySegmentationReference
Uses an existing
BinarySegmentation that is located by a unique identifier. |
class |
BinarySegmentationThreshold
Implementation of
BinarySegmentation that performs global
thresholding. |
class |
BinarySegmentationUnary
An implementation of
BinarySegmentation that delegates to one other BinarySegmentation . |
Modifier and Type | Method and Description |
---|---|
BinarySegmentation |
BinarySegmentationUnary.getSegment()
The delegate
BinarySegmentation that may be called. |
Modifier and Type | Method and Description |
---|---|
protected abstract BinaryVoxels<UnsignedByteBuffer> |
BinarySegmentationUnary.segmentFromExistingSegmentation(VoxelsUntyped voxels,
BinarySegmentationParameters parameters,
Optional<ObjectMask> objectMask,
BinarySegmentation segment)
Performs a binary-segmentation, in a similar manner to
segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but
with the delegate as additional argument. |
void |
BinarySegmentationUnary.setSegment(BinarySegmentation segment)
The delegate
BinarySegmentation that may be called. |
Modifier and Type | Method and Description |
---|---|
BinarySegmentation |
SegmentChannel.getSegment()
Segmentation algorithm
|
Modifier and Type | Method and Description |
---|---|
void |
SegmentChannel.setSegment(BinarySegmentation segment)
Segmentation algorithm
|
Modifier and Type | Method and Description |
---|---|
BinarySegmentation |
BinarySegmentByObject.getBinarySgmn() |
Modifier and Type | Method and Description |
---|---|
void |
BinarySegmentByObject.setBinarySgmn(BinarySegmentation binarySgmn) |
Modifier and Type | Method and Description |
---|---|
BinarySegmentation |
ConnectedComponentsFromBinarySegmentation.getSegment() |
BinarySegmentation |
SegmentOnMaximumIntensityAndExpandInZ.getSegmentStack() |
Modifier and Type | Method and Description |
---|---|
void |
ConnectedComponentsFromBinarySegmentation.setSegment(BinarySegmentation segment) |
void |
SegmentOnMaximumIntensityAndExpandInZ.setSegmentStack(BinarySegmentation segmentStack) |
Modifier and Type | Class and Description |
---|---|
class |
Invert
Performs a segmentation and inverts and on and off bytes
|
class |
Repeat |
class |
Sequence
Performs a sequence of succesive segmentations
|
class |
ThresholdAgainstChannel
Thresholds each voxels by comparing against another channel that has per-voxel thresholds
|
Modifier and Type | Method and Description |
---|---|
List<BinarySegmentation> |
Sequence.getList()
A list of binary-segmentations that are applied successively (the output of the predecessor
becomes the input of the sucecssor)
|
Modifier and Type | Method and Description |
---|---|
BinaryVoxels<UnsignedByteBuffer> |
Repeat.segmentFromExistingSegmentation(VoxelsUntyped voxels,
BinarySegmentationParameters parameters,
Optional<ObjectMask> objectMask,
BinarySegmentation segment) |
BinaryVoxels<UnsignedByteBuffer> |
Invert.segmentFromExistingSegmentation(VoxelsUntyped voxels,
BinarySegmentationParameters parameters,
Optional<ObjectMask> objectMask,
BinarySegmentation segment) |
Modifier and Type | Method and Description |
---|---|
void |
Sequence.setList(List<BinarySegmentation> list)
A list of binary-segmentations that are applied successively (the output of the predecessor
becomes the input of the sucecssor)
|
Modifier and Type | Class and Description |
---|---|
class |
SegmentThresholdAboveMinBound |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.