Uses of Class
org.anchoranalysis.image.bean.segment.binary.BinarySegmentation

Packages that use BinarySegmentation

Package	Description
org.anchoranalysis.image.bean.nonbean.init	Classes that aren't AnchorBeans that pertain to the initialization of image-related beans.
org.anchoranalysis.image.bean.segment.binary	Base classes to perform binary-segmentation.
org.anchoranalysis.plugin.image.bean.mask.provider.segment	Implementations of MaskProvider where an ObjectCollection is created by segmenting a Channel.
org.anchoranalysis.plugin.image.bean.object.provider.segment	Implementations of ObjectCollectionProvider involving segmentation.
org.anchoranalysis.plugin.image.bean.object.segment.channel	Implementations of SegmentChannelIntoObjects.
org.anchoranalysis.plugin.image.bean.segment.binary	Implementations of BinarySegmentation.

Uses of BinarySegmentation in org.anchoranalysis.image.bean.nonbean.init

Methods in org.anchoranalysis.image.bean.nonbean.init that return types with arguments of type BinarySegmentation

Modifier and Type	Method	Description
NamedProviderStore<BinarySegmentation>	ImageInitialization.binarySegmentations()	A collection of BinarySegmentations, indexed by name.

Uses of BinarySegmentation in org.anchoranalysis.image.bean.segment.binary

Subclasses of BinarySegmentation in org.anchoranalysis.image.bean.segment.binary

Modifier and Type	Class	Description
class	BinarySegmentationReference	Uses an existing BinarySegmentation that is located by a unique identifier.
class	BinarySegmentationThreshold	Implementation of BinarySegmentation that performs global thresholding.
class	BinarySegmentationUnary	An implementation of BinarySegmentation that delegates to one other BinarySegmentation.

Methods in org.anchoranalysis.image.bean.segment.binary that return BinarySegmentation

Modifier and Type	Method	Description
BinarySegmentation	BinarySegmentationUnary.getSegment()	The delegate BinarySegmentation that may be called.

Methods in org.anchoranalysis.image.bean.segment.binary with parameters of type BinarySegmentation

Modifier and Type	Method	Description
protected abstract BinaryVoxels<UnsignedByteBuffer>	BinarySegmentationUnary.segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)	Performs a binary-segmentation, in a similar manner to segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.
void	BinarySegmentationUnary.setSegment(BinarySegmentation segment)	The delegate BinarySegmentation that may be called.

Uses of BinarySegmentation in org.anchoranalysis.plugin.image.bean.mask.provider.segment

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.segment that return BinarySegmentation

Modifier and Type	Method	Description
BinarySegmentation	SegmentChannel.getSegment()	Segmentation algorithm

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.segment with parameters of type BinarySegmentation

Modifier and Type	Method	Description
void	SegmentChannel.setSegment(BinarySegmentation segment)	Segmentation algorithm

Uses of BinarySegmentation in org.anchoranalysis.plugin.image.bean.object.provider.segment

Methods in org.anchoranalysis.plugin.image.bean.object.provider.segment that return BinarySegmentation

Modifier and Type	Method	Description
BinarySegmentation	BinarySegmentByObject.getBinarySgmn()

Methods in org.anchoranalysis.plugin.image.bean.object.provider.segment with parameters of type BinarySegmentation

Modifier and Type	Method	Description
void	BinarySegmentByObject.setBinarySgmn(BinarySegmentation binarySgmn)

Uses of BinarySegmentation in org.anchoranalysis.plugin.image.bean.object.segment.channel

Methods in org.anchoranalysis.plugin.image.bean.object.segment.channel that return BinarySegmentation

Modifier and Type	Method	Description
BinarySegmentation	ConnectedComponentsFromBinarySegmentation.getSegment()
BinarySegmentation	SegmentOnMaximumIntensityAndExpandInZ.getSegmentStack()

Methods in org.anchoranalysis.plugin.image.bean.object.segment.channel with parameters of type BinarySegmentation

Modifier and Type	Method	Description
void	ConnectedComponentsFromBinarySegmentation.setSegment(BinarySegmentation segment)
void	SegmentOnMaximumIntensityAndExpandInZ.setSegmentStack(BinarySegmentation segmentStack)

Uses of BinarySegmentation in org.anchoranalysis.plugin.image.bean.segment.binary

Subclasses of BinarySegmentation in org.anchoranalysis.plugin.image.bean.segment.binary

Modifier and Type	Class	Description
class	Invert	Performs a segmentation and inverts and on and off bytes
class	Repeat	Repeats a binary segmentation operation for a specified number of iterations.
class	Sequence	Performs a sequence of succesive segmentations
class	ThresholdAgainstChannel	Thresholds each voxels by comparing against another channel that has per-voxel thresholds

Methods in org.anchoranalysis.plugin.image.bean.segment.binary that return types with arguments of type BinarySegmentation

Modifier and Type	Method	Description
List<BinarySegmentation>	Sequence.getList()	A list of binary-segmentations that are applied successively (the output of the predecessor becomes the input of the sucecssor)

Methods in org.anchoranalysis.plugin.image.bean.segment.binary with parameters of type BinarySegmentation

Modifier and Type	Method	Description
BinaryVoxels<UnsignedByteBuffer>	Invert.segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)
BinaryVoxels<UnsignedByteBuffer>	Repeat.segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)

Method parameters in org.anchoranalysis.plugin.image.bean.segment.binary with type arguments of type BinarySegmentation

Modifier and Type	Method	Description
void	Sequence.setList(List<BinarySegmentation> list)	A list of binary-segmentations that are applied successively (the output of the predecessor becomes the input of the sucecssor)