Uses of Class
org.anchoranalysis.image.bean.segment.object.SegmentChannelIntoObjects

Packages that use SegmentChannelIntoObjects

Package	Description
org.anchoranalysis.image.bean.segment.object	Base classes to segment a channel into objects.
org.anchoranalysis.plugin.image.bean.object.provider.segment	Implementations of ObjectCollectionProvider involving segmentation.
org.anchoranalysis.plugin.image.bean.object.segment.channel	Implementations of SegmentChannelIntoObjects.
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong	Implementation of a Watershed transformation based on Yeong et al. 2009.
org.anchoranalysis.plugin.imagej.bean.object.segment	Implementations of ObjectCollectionProvider that call ImageJ to perform segmentation.

Uses of SegmentChannelIntoObjects in org.anchoranalysis.image.bean.segment.object

Subclasses of SegmentChannelIntoObjects in org.anchoranalysis.image.bean.segment.object

Modifier and Type	Class	Description
class	SegmentChannelIntoObjectsUnary	Implementation of SegmentChannelIntoObjects that calls a single delegate SegmentChannelIntoObjects.

Methods in org.anchoranalysis.image.bean.segment.object that return SegmentChannelIntoObjects

Modifier and Type	Method	Description
SegmentChannelIntoObjects	SegmentChannelIntoObjectsUnary.getSegment()	The delegate SegmentChannelIntoObjects that is called.

Methods in org.anchoranalysis.image.bean.segment.object with parameters of type SegmentChannelIntoObjects

Modifier and Type	Method	Description
protected abstract ObjectCollection	SegmentChannelIntoObjectsUnary.segment(Channel channel, Optional<ObjectMask> object, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)	Creates an ObjectCollection given the segmentation-results provided by the delegate.
void	SegmentChannelIntoObjectsUnary.setSegment(SegmentChannelIntoObjects segment)	The delegate SegmentChannelIntoObjects that is called.

Uses of SegmentChannelIntoObjects in org.anchoranalysis.plugin.image.bean.object.provider.segment

Methods in org.anchoranalysis.plugin.image.bean.object.provider.segment that return SegmentChannelIntoObjects

Modifier and Type	Method	Description
SegmentChannelIntoObjects	SegmentChannel.getSegment()	The segmentation algorithm to use.
SegmentChannelIntoObjects	SegmentChannelByObject.getSegment()
SegmentChannelIntoObjects	SegmentWithSeeds.getSegment()

Methods in org.anchoranalysis.plugin.image.bean.object.provider.segment with parameters of type SegmentChannelIntoObjects

Modifier and Type	Method	Description
void	SegmentChannel.setSegment(SegmentChannelIntoObjects segment)	The segmentation algorithm to use.
void	SegmentChannelByObject.setSegment(SegmentChannelIntoObjects segment)
void	SegmentWithSeeds.setSegment(SegmentChannelIntoObjects segment)

Uses of SegmentChannelIntoObjects in org.anchoranalysis.plugin.image.bean.object.segment.channel

Subclasses of SegmentChannelIntoObjects in org.anchoranalysis.plugin.image.bean.object.segment.channel

Modifier and Type	Class	Description
class	AtScale	Perform a segmentation at a different scale, and then fit the results back to the original scale.
class	ConnectedComponentsFromBinarySegmentation	Performs a binary-segmentation of the channel and converts its connected-components into objects
class	Filter	Applies an object-filter to the results of an upstream segmentation.
class	ImposeMinima	Imposes minima in seed locations on the input-channel before performing the segmentation
class	Mser	Applies the MSER algorithm from imglib2
class	SegmentOnMaximumIntensityAndExpandInZ	Perform a segmentation in a MIP instead of z-stacks, and fits the result back into a 3D segmentation.

Methods in org.anchoranalysis.plugin.image.bean.object.segment.channel with parameters of type SegmentChannelIntoObjects

Modifier and Type	Method	Description
ObjectCollection	AtScale.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)
ObjectCollection	Filter.segment(Channel channel, Optional<ObjectMask> object, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)
ObjectCollection	ImposeMinima.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)
ObjectCollection	SegmentOnMaximumIntensityAndExpandInZ.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)

Uses of SegmentChannelIntoObjects in org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong

Subclasses of SegmentChannelIntoObjects in org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong

Modifier and Type	Class	Description
class	WatershedYeong	A 'rainfall' watershed algorithm

Uses of SegmentChannelIntoObjects in org.anchoranalysis.plugin.imagej.bean.object.segment

Subclasses of SegmentChannelIntoObjects in org.anchoranalysis.plugin.imagej.bean.object.segment

Modifier and Type	Class	Description
class	FloodFillEachIntensityLevel	Creates an object for each separate intensity-value (beginning at startingColor) by flood-filling.