Package | Description |
---|---|
org.anchoranalysis.image.bean.segment.object |
Base classes to segment a channel into objects.
|
org.anchoranalysis.plugin.image.bean.object.provider.segment |
Implementations of
ObjectCollectionProvider
involving segmentation. |
org.anchoranalysis.plugin.image.bean.object.segment.channel |
Implementations of
SegmentChannelIntoObjects . |
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong |
Implementation of a Watershed transformation
based on Yeong et al.
|
org.anchoranalysis.plugin.imagej.bean.object.segment |
Modifier and Type | Class and Description |
---|---|
class |
SegmentChannelIntoObjectsUnary
Implementation of
SegmentChannelIntoObjects that calls a single delegate SegmentChannelIntoObjects . |
Modifier and Type | Method and Description |
---|---|
SegmentChannelIntoObjects |
SegmentChannelIntoObjectsUnary.getSegment()
The delegate
SegmentChannelIntoObjects that is called. |
Modifier and Type | Method and Description |
---|---|
protected abstract ObjectCollection |
SegmentChannelIntoObjectsUnary.segment(Channel channel,
Optional<ObjectMask> object,
Optional<ObjectCollection> seeds,
SegmentChannelIntoObjects upstreamSegmenter)
Creates an
ObjectCollection given the segmentation-results provided by the delegate. |
void |
SegmentChannelIntoObjectsUnary.setSegment(SegmentChannelIntoObjects segment)
The delegate
SegmentChannelIntoObjects that is called. |
Modifier and Type | Method and Description |
---|---|
SegmentChannelIntoObjects |
SegmentChannelByObject.getSegment() |
SegmentChannelIntoObjects |
SegmentChannel.getSegment() |
SegmentChannelIntoObjects |
SegmentWithSeeds.getSegment() |
Modifier and Type | Method and Description |
---|---|
void |
SegmentChannelByObject.setSegment(SegmentChannelIntoObjects segment) |
void |
SegmentChannel.setSegment(SegmentChannelIntoObjects segment) |
void |
SegmentWithSeeds.setSegment(SegmentChannelIntoObjects segment) |
Modifier and Type | Class and Description |
---|---|
class |
AtScale
Perform a segmentation at a different scale, and then fit the results back to the original scale.
|
class |
ConnectedComponentsFromBinarySegmentation
Performs a binary-segmentation of the channel and converts its connected-components into objects
|
class |
Filter
Applies an object-filter to the results of an upstream segmentation.
|
class |
ImposeMinima
Imposes minima in seed locations on the input-channel before performing the segmentation
|
class |
Mser
Applies the MSER algorithm from imglib2
|
class |
SegmentOnMaximumIntensityAndExpandInZ
Perform a segmentation in a MIP instead of z-stacks, and fits the result back into a 3D
segmentation.
|
Modifier and Type | Method and Description |
---|---|
ObjectCollection |
ImposeMinima.segment(Channel channel,
Optional<ObjectMask> objectMask,
Optional<ObjectCollection> seeds,
SegmentChannelIntoObjects upstreamSegmenter) |
ObjectCollection |
Filter.segment(Channel channel,
Optional<ObjectMask> object,
Optional<ObjectCollection> seeds,
SegmentChannelIntoObjects upstreamSegmenter) |
ObjectCollection |
SegmentOnMaximumIntensityAndExpandInZ.segment(Channel channel,
Optional<ObjectMask> objectMask,
Optional<ObjectCollection> seeds,
SegmentChannelIntoObjects upstreamSegmenter) |
ObjectCollection |
AtScale.segment(Channel channel,
Optional<ObjectMask> objectMask,
Optional<ObjectCollection> seeds,
SegmentChannelIntoObjects upstreamSegmenter) |
Modifier and Type | Class and Description |
---|---|
class |
WatershedYeong
A 'rainfall' watershed algorithm
|
Modifier and Type | Class and Description |
---|---|
class |
FloodFillEachIntensityLevel
Creates an object for each separate intensity-value (beginning at
startingColor ) by
flood-filling. |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.