Package | Description |
---|---|
org.anchoranalysis.io.bioformats |
Non-bean classes for filesystem I/O using Bioformats.
|
org.anchoranalysis.io.bioformats.bean |
Beans for filesystem I/O using Bioformats.
|
org.anchoranalysis.io.bioformats.bean.options |
User-specified options that can modify metadata or other attributes of a loaded Bioformats image.
|
org.anchoranalysis.io.bioformats.copyconvert |
Converts the byte stream opened by Bioformats into channels of particular data-type.
|
Modifier and Type | Method and Description |
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Dimensions |
DimensionsCreator.apply(loci.formats.IFormatReader reader,
ReadOptions readOptions,
int seriesIndex) |
Modifier and Type | Method and Description |
---|---|
ReadOptions |
BioformatsReader.getOptions()
Options that influence how stack is read.
|
Modifier and Type | Method and Description |
---|---|
void |
BioformatsReader.setOptions(ReadOptions options)
Options that influence how stack is read.
|
Constructor and Description |
---|
BioformatsReader(ReadOptions options)
Create with particular options.
|
Modifier and Type | Class and Description |
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class |
Default |
class |
ForceBitsPerPixel |
class |
ForceChannelsPerByteArray |
class |
ForceNumberChannels |
class |
ForceNumberFrames |
class |
ForceTimeSeriesToStack
Treats a time-series as if it was a z-stack
|
class |
ReadOptionsDelegate
Forces a particular settings, but otherwise uses settings from a delegate
|
class |
SwitchChannelTime
Treats the channel index as if it's time, and vice versa
|
Modifier and Type | Method and Description |
---|---|
protected ReadOptions |
ReadOptionsDelegate.delegate() |
ReadOptions |
ReadOptionsDelegate.getOptions() |
Modifier and Type | Method and Description |
---|---|
void |
ReadOptionsDelegate.setOptions(ReadOptions options) |
Modifier and Type | Method and Description |
---|---|
static void |
CopyConvert.copyAllFrames(loci.formats.IFormatReader reader,
List<Channel> destination,
ImageFileShape targetShape,
ConvertTo<?> convertTo,
ReadOptions readOptions,
OrientationChange orientationCorrection)
Copies all frames, channels, z-slices (in a byte-array) into a destination set of
Channel s converting them if necessary along the way. |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.