Uses of Class
org.anchoranalysis.image.bean.nonbean.segment.SegmentationFailedException

Packages that use SegmentationFailedException

Package	Description
org.anchoranalysis.image.bean.segment.binary	Base classes to perform binary-segmentation.
org.anchoranalysis.image.bean.segment.object	Base classes to segment a channel into objects.
org.anchoranalysis.image.inference.bean.segment.instance	Instance-segmentation of a Stack.
org.anchoranalysis.plugin.image.bean.object.segment.channel	Implementations of SegmentChannelIntoObjects.
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong	Implementation of a Watershed transformation based on Yeong et al. 2009.
org.anchoranalysis.plugin.image.bean.segment.binary	Implementations of BinarySegmentation.
org.anchoranalysis.plugin.imagej.bean.object.segment	Implementations of ObjectCollectionProvider that call ImageJ to perform segmentation.
org.anchoranalysis.test.image.segment	Fixtures or other helper classes for testing image segmentation algorithms.

Uses of SegmentationFailedException in org.anchoranalysis.image.bean.segment.binary

Methods in org.anchoranalysis.image.bean.segment.binary that throw SegmentationFailedException

Modifier and Type	Method	Description
abstract BinaryVoxels<UnsignedByteBuffer>	BinarySegmentation.segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask)	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
BinaryVoxels<UnsignedByteBuffer>	BinarySegmentationReference.segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask)
BinaryVoxels<UnsignedByteBuffer>	BinarySegmentationThreshold.segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask)
BinaryVoxels<UnsignedByteBuffer>	BinarySegmentationUnary.segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask)
protected abstract BinaryVoxels<UnsignedByteBuffer>	BinarySegmentationUnary.segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)	Performs a binary-segmentation, in a similar manner to BinarySegmentation.segment(org.anchoranalysis.image.voxel.VoxelsUntyped, org.anchoranalysis.image.bean.nonbean.segment.BinarySegmentationParameters, java.util.Optional<org.anchoranalysis.image.voxel.object.ObjectMask>) but with the delegate as additional argument.

Uses of SegmentationFailedException in org.anchoranalysis.image.bean.segment.object

Methods in org.anchoranalysis.image.bean.segment.object that throw SegmentationFailedException

Modifier and Type	Method	Description
protected static void	SegmentChannelIntoObjects.checkUnsupported3D(Channel channel)	Throws an exception if the channel has more than one z-slice, as 3D is unsupported by the implementation.
protected static void	SegmentChannelIntoObjects.checkUnsupportedObjectMask(Optional<ObjectMask> objectMask)	Throws an exception if object is present, as it is unsupported by the implementation.
protected static void	SegmentChannelIntoObjects.checkUnsupportedSeeds(Optional<ObjectCollection> seeds)	Throws an exception if seeds is present, as it is unsupported by the implementation.
abstract ObjectCollection	SegmentChannelIntoObjects.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds)	Segments a channel to produce an object-collection.
ObjectCollection	SegmentChannelIntoObjectsUnary.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds)
protected abstract ObjectCollection	SegmentChannelIntoObjectsUnary.segment(Channel channel, Optional<ObjectMask> object, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)	Creates an ObjectCollection given the segmentation-results provided by the delegate.

Uses of SegmentationFailedException in org.anchoranalysis.image.inference.bean.segment.instance

Methods in org.anchoranalysis.image.inference.bean.segment.instance that throw SegmentationFailedException

Modifier and Type	Method	Description
SegmentedObjects	SegmentStackIntoObjectsPooled.segment(Stack stack, ExecutionTimeRecorder executionTimeRecorder)	Segments individually using a pool of size 1 just for one stack.
abstract SegmentedObjects	SegmentStackIntoObjectsPooled.segment(Stack stack, ConcurrentModelPool<T> modelPool, ExecutionTimeRecorder executionTimeRecorder)	Segments a stack to produce an object-collection.
SegmentedObjects	SegmentStackIntoObjectsScaleDecode.segment(Stack stack, ConcurrentModelPool<S> modelPool, ExecutionTimeRecorder executionTimeRecorder)
SegmentedObjects	SuppressNonMaximum.segment(Stack stack, ConcurrentModelPool<T> modelPool, ExecutionTimeRecorder executionTimeRecorder)

Uses of SegmentationFailedException in org.anchoranalysis.plugin.image.bean.object.segment.channel

Methods in org.anchoranalysis.plugin.image.bean.object.segment.channel that throw SegmentationFailedException

Modifier and Type	Method	Description
ObjectCollection	AtScale.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)
ObjectCollection	ConnectedComponentsFromBinarySegmentation.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds)
ObjectCollection	Filter.segment(Channel channel, Optional<ObjectMask> object, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)
ObjectCollection	ImposeMinima.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)
ObjectCollection	Mser.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds)
ObjectCollection	SegmentOnMaximumIntensityAndExpandInZ.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds, SegmentChannelIntoObjects upstreamSegmenter)

Uses of SegmentationFailedException in org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong

Methods in org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong that throw SegmentationFailedException

Modifier and Type	Method	Description
ObjectCollection	WatershedYeong.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds)

Uses of SegmentationFailedException in org.anchoranalysis.plugin.image.bean.segment.binary

Methods in org.anchoranalysis.plugin.image.bean.segment.binary that throw SegmentationFailedException

Modifier and Type	Method	Description
BinaryVoxels<UnsignedByteBuffer>	Sequence.segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask)
BinaryVoxels<UnsignedByteBuffer>	ThresholdAgainstChannel.segment(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> object)
BinaryVoxels<UnsignedByteBuffer>	Invert.segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)
BinaryVoxels<UnsignedByteBuffer>	Repeat.segmentFromExistingSegmentation(VoxelsUntyped voxels, BinarySegmentationParameters parameters, Optional<ObjectMask> objectMask, BinarySegmentation segment)

Uses of SegmentationFailedException in org.anchoranalysis.plugin.imagej.bean.object.segment

Methods in org.anchoranalysis.plugin.imagej.bean.object.segment that throw SegmentationFailedException

Modifier and Type	Method	Description
ObjectCollection	FloodFillEachIntensityLevel.segment(Channel channel, Optional<ObjectMask> objectMask, Optional<ObjectCollection> seeds)

Uses of SegmentationFailedException in org.anchoranalysis.test.image.segment

Methods in org.anchoranalysis.test.image.segment that throw SegmentationFailedException

Modifier and Type	Method	Description
void	InstanceSegmentationTestBase.testGrayscale8Bit()	Tests the segmentation on a grayscale 8-bit image.
void	InstanceSegmentationTestBase.testRGB()	Tests the segmentation on an RGB image.