Uses of Class
org.anchoranalysis.image.bean.segment.SegmentationBean

Packages that use SegmentationBean

Package	Description
org.anchoranalysis.image.bean.segment.binary	Base classes to perform binary-segmentation.
org.anchoranalysis.image.bean.segment.object	Base classes to segment a channel into objects.
org.anchoranalysis.image.inference.bean.segment.instance	Instance-segmentation of a Stack.
org.anchoranalysis.plugin.image.bean.object.segment.channel	Implementations of SegmentChannelIntoObjects.
org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong	Implementation of a Watershed transformation based on Yeong et al. 2009.
org.anchoranalysis.plugin.image.bean.segment.binary	Implementations of BinarySegmentation.
org.anchoranalysis.plugin.imagej.bean.object.segment	Implementations of ObjectCollectionProvider that call ImageJ to perform segmentation.
org.anchoranalysis.plugin.onnx.bean.object.segment.stack	Segmenting a Stack using the ONNX Runtime to produce an ObjectCollection.
org.anchoranalysis.plugin.opencv.bean.object.segment.stack	Segmentation of a Stack using OpenCV.

Uses of SegmentationBean in org.anchoranalysis.image.bean.segment.binary

Subclasses of SegmentationBean in org.anchoranalysis.image.bean.segment.binary

Modifier and Type	Class	Description
class	BinarySegmentation	Performs a segmentation on voxels so that each voxel has an on or off state after the operation.
class	BinarySegmentationReference	Uses an existing BinarySegmentation that is located by a unique identifier.
class	BinarySegmentationThreshold	Implementation of BinarySegmentation that performs global thresholding.
class	BinarySegmentationUnary	An implementation of BinarySegmentation that delegates to one other BinarySegmentation.

Uses of SegmentationBean in org.anchoranalysis.image.bean.segment.object

Subclasses of SegmentationBean in org.anchoranalysis.image.bean.segment.object

Modifier and Type	Class	Description
class	SegmentChannelIntoObjects	A base class for algorithms to segment a channel into one or more objects.
class	SegmentChannelIntoObjectsUnary	Implementation of SegmentChannelIntoObjects that calls a single delegate SegmentChannelIntoObjects.

Uses of SegmentationBean in org.anchoranalysis.image.inference.bean.segment.instance

Subclasses of SegmentationBean in org.anchoranalysis.image.inference.bean.segment.instance

Modifier and Type	Class	Description
class	SegmentStackIntoObjectsPooled<T extends InferenceModel>	A base class for algorithms to segment a stack into one or more objects - using a pool of models
class	SegmentStackIntoObjectsScaleDecode<T,S extends ImageInferenceModel<T>>	A SegmentStackIntoObjectsScaleDecode that scales the input image, before performing inference, and then decodes the output.
class	SuppressNonMaximum<T extends InferenceModel>	Applies a segmentation procedure followed by non-maximum suppression.

Uses of SegmentationBean in org.anchoranalysis.plugin.image.bean.object.segment.channel

Subclasses of SegmentationBean in org.anchoranalysis.plugin.image.bean.object.segment.channel

Modifier and Type	Class	Description
class	AtScale	Perform a segmentation at a different scale, and then fit the results back to the original scale.
class	ConnectedComponentsFromBinarySegmentation	Performs a binary-segmentation of the channel and converts its connected-components into objects
class	Filter	Applies an object-filter to the results of an upstream segmentation.
class	ImposeMinima	Imposes minima in seed locations on the input-channel before performing the segmentation
class	Mser	Applies the MSER algorithm from imglib2
class	SegmentOnMaximumIntensityAndExpandInZ	Perform a segmentation in a MIP instead of z-stacks, and fits the result back into a 3D segmentation.

Uses of SegmentationBean in org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong

Subclasses of SegmentationBean in org.anchoranalysis.plugin.image.bean.object.segment.channel.watershed.yeong

Modifier and Type	Class	Description
class	WatershedYeong	A 'rainfall' watershed algorithm

Uses of SegmentationBean in org.anchoranalysis.plugin.image.bean.segment.binary

Subclasses of SegmentationBean in org.anchoranalysis.plugin.image.bean.segment.binary

Modifier and Type	Class	Description
class	Invert	Performs a segmentation and inverts and on and off bytes
class	Repeat	Repeats a binary segmentation operation for a specified number of iterations.
class	Sequence	Performs a sequence of succesive segmentations
class	ThresholdAgainstChannel	Thresholds each voxels by comparing against another channel that has per-voxel thresholds

Uses of SegmentationBean in org.anchoranalysis.plugin.imagej.bean.object.segment

Subclasses of SegmentationBean in org.anchoranalysis.plugin.imagej.bean.object.segment

Modifier and Type	Class	Description
class	FloodFillEachIntensityLevel	Creates an object for each separate intensity-value (beginning at startingColor) by flood-filling.

Uses of SegmentationBean in org.anchoranalysis.plugin.onnx.bean.object.segment.stack

Subclasses of SegmentationBean in org.anchoranalysis.plugin.onnx.bean.object.segment.stack

Modifier and Type	Class	Description
class	SegmentObjectsFromONNXModel	Performs instance-segmentation using the ONNX Runtime and an .onnx model file.

Uses of SegmentationBean in org.anchoranalysis.plugin.opencv.bean.object.segment.stack

Subclasses of SegmentationBean in org.anchoranalysis.plugin.opencv.bean.object.segment.stack

Modifier and Type	Class	Description
class	SegmentObjectsFromTensorFlowModel	Performs instance-segmentation using OpenCV's DNN module and a TensorFlow .pb SavedModel file.