Uses of Class
org.anchoranalysis.feature.bean.Feature

Packages that use Feature

Package	Description
org.anchoranalysis.feature.bean	Beans pertaining to feature-calculation.
org.anchoranalysis.feature.bean.list	A feature-list (custom list type for features) and associated providers.
org.anchoranalysis.feature.bean.operator	Features that are sufficiently generic to work on any input-type.
org.anchoranalysis.feature.bean.provider	Provider of a single feature.
org.anchoranalysis.feature.bean.results	Defines base class FeatureResults together with some implementations.
org.anchoranalysis.feature.calculate	Sub-feature units of calculation that can be cached.
org.anchoranalysis.feature.calculate.cache	Classes to cache feature-results or parts of feature-results that occur repeatedly among features or across calculations of the same feature.
org.anchoranalysis.feature.input	Base classes providing inputs to feature calculations.
org.anchoranalysis.feature.name	Data objects for the names of features.
org.anchoranalysis.feature.session	A defined context in which one or more features are provided inputs and produce results.
org.anchoranalysis.feature.shared	Features shared for referencing among calculations.
org.anchoranalysis.feature.store	A collection of named-Features.
org.anchoranalysis.image.feature.bean	Beans pertaining to feature definition and calculation.
org.anchoranalysis.image.feature.bean.evaluator	Beans that define context (which feature, which energy-stack) for evaluating feature-inputs.
org.anchoranalysis.image.feature.bean.histogram	Features that operate on a Histogram.
org.anchoranalysis.image.feature.bean.object.collection	Features that operate on a ObjectCollection.
org.anchoranalysis.image.feature.bean.object.pair	Features that operate on a pair of ObjectMasks.
org.anchoranalysis.image.feature.bean.object.single	Features that operate on a single ObjectMask.
org.anchoranalysis.image.feature.bean.physical	Features that convert to/from physical spatial units (e.g. meters) as opposed to pixels/voxels.
org.anchoranalysis.mpp.feature.bean.energy.element	Implementations and helper classes for calculating energy during an energy-minimization optimization scheme.
org.anchoranalysis.mpp.feature.energy.scheme	Factorized form of storing the energy during an energy-minimization optimization scheme.
org.anchoranalysis.plugin.image.bean.channel.provider.score	Implementations of ChannelProvider that assign a score to particular subregions of a channel.
org.anchoranalysis.plugin.image.feature.bean.dimensions	Features that are calculated from Dimensions.
org.anchoranalysis.plugin.image.feature.bean.histogram.statistic	Implementations of FeatureHistogram that calculate statistics.
org.anchoranalysis.plugin.image.feature.bean.histogram.threshold	Implementations of FeatureHistogram that perform thresholding.
org.anchoranalysis.plugin.image.feature.bean.list.pair	Implementations of FeatureListProvider with input-type FeatureInputPairObjects.
org.anchoranalysis.plugin.image.feature.bean.list.permute	Implementations of FeatureListProvider that derive new features with permuted property-values.
org.anchoranalysis.plugin.image.feature.bean.metadata	Implementations of FeatureImageMetadata.
org.anchoranalysis.plugin.image.feature.bean.object.collection	Implementations of FeatureObjectCollection.
org.anchoranalysis.plugin.image.feature.bean.object.pair	Features from pairs of ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap	Features that calculate the degree of overlap between two ObjectMasks.
org.anchoranalysis.plugin.image.feature.bean.object.pair.touching	Features that calculate how many other objects an ObjectMask directly neighbors.
org.anchoranalysis.plugin.image.feature.bean.object.single	Implementations of FeatureSingleObject.
org.anchoranalysis.plugin.image.feature.bean.object.single.border	Implementations of FeatureSingleObject that determine if an object lies at the border of an image.
org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox	Implementations of FeatureSingleObject that consider an object's bounding-box.
org.anchoranalysis.plugin.image.feature.bean.object.single.energy	Implementations of FeatureSingleObject that reference a particular Channel in the associated EnergyStack.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity	Implementations of FeatureSingleObject that measure an object's intensity on a corresponding Channel.
org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient	Implementations of FeatureSingleObject that measure an object's gradient from corresponding Channels storing the gradient.
org.anchoranalysis.plugin.image.feature.bean.object.single.moments	Implementations of FeatureSingleObject based on calculating image moments, with or without image intensity.
org.anchoranalysis.plugin.image.feature.bean.object.single.morphological	Implementations of FeatureSingleObject that implement morphological operations.
org.anchoranalysis.plugin.image.feature.bean.object.single.shape	Implementations of FeatureSingleObject that measure the shape of the ObjectMask.
org.anchoranalysis.plugin.image.feature.bean.object.single.shared	Implementations of FeatureSingleObject that use SharedObjects for calculations.
org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting	Implementations of FeatureSingleObject that use SharedObjects for calculations, and measure the degree of intersection between objects.
org.anchoranalysis.plugin.image.feature.bean.object.single.slice	Implementations of FeatureSingleObject that processes an object slice-by-slice in the z-dimension.
org.anchoranalysis.plugin.image.feature.bean.object.single.surface	Implementations of FeatureSingleObject that measures aspects of the surface of an ObjectMask.
org.anchoranalysis.plugin.image.feature.bean.physical	Beans involving physical units for measurement.
org.anchoranalysis.plugin.image.feature.bean.shared	Beans involving SharedObjects.
org.anchoranalysis.plugin.image.feature.bean.shared.object	Beans involving SharedObjects and ObjectCollection.
org.anchoranalysis.plugin.image.feature.bean.stack.intensity	Implementations of FeatureStack or other features that involve processing a Stack.
org.anchoranalysis.plugin.image.feature.bean.stack.object	Implementations of FeatureStack that process an ObjectCollection.
org.anchoranalysis.plugin.image.feature.object.calculation.delegate	Implementations of CalculationPart as used by features elsewhere in this package.
org.anchoranalysis.plugin.opencv.bean.feature	Extracting features using OpenCV.
org.anchoranalysis.plugin.operator.feature.bean	Features that combine or convert other features in a generic way.
org.anchoranalysis.plugin.operator.feature.bean.arithmetic	Arithmetic involving features.
org.anchoranalysis.plugin.operator.feature.bean.conditional	Conditional operations involving features.
org.anchoranalysis.plugin.operator.feature.bean.list	Operations that extract a single value from a list of features.
org.anchoranalysis.plugin.operator.feature.bean.range	Features that compare against a range of values.
org.anchoranalysis.plugin.operator.feature.bean.replace	Replaces particular values if they are returned from a feature.
org.anchoranalysis.plugin.operator.feature.bean.statistics	Converts feature values based upon a statistical measure of distribution.
org.anchoranalysis.plugin.operator.feature.physical	Converting to/from physical units.
org.anchoranalysis.plugin.points.bean.feature	Features related to points and fitting points to conics.
org.anchoranalysis.test.feature.plugins	Testing utilities and fixtures with no greater downstream dependency than anchor-image-feature or anchor-mpp.
org.anchoranalysis.test.feature.plugins.mockfeature	A mocked feature internally using a feature-calculation.

Uses of Feature in org.anchoranalysis.feature.bean

Methods in org.anchoranalysis.feature.bean that return Feature

Modifier and Type	Method	Description
<S extends T> Feature<S>	Feature.castAs()	Casts the feature to having a different input-type.
Feature<T>	Feature.duplicateChangeName(String customName)	Duplicates the feature as per AnchorBean.duplicateBean() but sets a particular custom-name.

Methods in org.anchoranalysis.feature.bean with parameters of type Feature

Modifier and Type	Method	Description
protected void	Feature.assignTo(Feature<FeatureInput> target)	Copies fields in this (base) class to target.

Uses of Feature in org.anchoranalysis.feature.bean.list

Methods in org.anchoranalysis.feature.bean.list that return Feature

Modifier and Type	Method	Description
Feature<T>	FeatureList.get(int index)	Returns the element at the specified position in this list.
Feature<T>	DefineSingle.getItem()	The sole feature that forms the list.

Methods in org.anchoranalysis.feature.bean.list that return types with arguments of type Feature

Modifier and Type	Method	Description
List<Feature<T>>	FeatureList.asList()	Exposes the underlying list of features in this data-structure.
List<Feature<T>>	Define.getList()	The list that specifies features.
List<Feature<T>>	FeatureList.getList()	The list of features.
Iterator<Feature<T>>	FeatureList.iterator()

Methods in org.anchoranalysis.feature.bean.list with parameters of type Feature

Modifier and Type	Method	Description
void	FeatureList.add(Feature<? extends T> feature)	Adds a feature to the current list.
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.from(Feature<T>... feature)	Creates a list for one or more features
void	DefineSingle.setItem(Feature<T> item)	The sole feature that forms the list.

Method parameters in org.anchoranalysis.feature.bean.list with type arguments of type Feature

Modifier and Type	Method	Description
<S extends FeatureInput, E extends Exception> FeatureList<S>	FeatureList.filterAndMap(Predicate<Feature<T>> predicate, CheckedFunction<Feature<T>,Feature<S>,E> mappingFunction)	Filters inputs and then performs a FeatureList.map(org.anchoranalysis.core.functional.checked.CheckedFunction<org.anchoranalysis.feature.bean.Feature<T>, org.anchoranalysis.feature.bean.Feature<S>, E>).
<S extends FeatureInput, E extends Exception> FeatureList<S>	FeatureList.filterAndMap(Predicate<Feature<T>> predicate, CheckedFunction<Feature<T>,Feature<S>,E> mappingFunction)	Filters inputs and then performs a FeatureList.map(org.anchoranalysis.core.functional.checked.CheckedFunction<org.anchoranalysis.feature.bean.Feature<T>, org.anchoranalysis.feature.bean.Feature<S>, E>).
<S extends FeatureInput, E extends Exception> FeatureList<S>	FeatureList.filterAndMap(Predicate<Feature<T>> predicate, CheckedFunction<Feature<T>,Feature<S>,E> mappingFunction)	Filters inputs and then performs a FeatureList.map(org.anchoranalysis.core.functional.checked.CheckedFunction<org.anchoranalysis.feature.bean.Feature<T>, org.anchoranalysis.feature.bean.Feature<S>, E>).
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromIterable(Iterable<Feature<T>> iterable)	Creates a list of features from an iterable
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromProvider(Provider<Feature<T>> featureProvider)	Creates a list for a single-feature created from a provider
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromStream(Stream<Feature<T>> stream)	Creates a list of features from a stream
<S extends FeatureInput, E extends Exception> FeatureList<S>	FeatureList.map(CheckedFunction<Feature<T>,Feature<S>,E> mapFunc)	Creates a new feature-list where each feature is the result of applying a map-function to an existing feature.
<S extends FeatureInput, E extends Exception> FeatureList<S>	FeatureList.map(CheckedFunction<Feature<T>,Feature<S>,E> mapFunc)	Creates a new feature-list where each feature is the result of applying a map-function to an existing feature.
static <S, T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.mapFrom(Iterable<S> iterable, CheckedFunction<S,Feature<T>,E> mapFunc)	Creates a new feature-list by mapping an Iterable to Feature
static <S, T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.mapFromFiltered(Iterable<S> iterable, Predicate<S> predicate, CheckedFunction<S,Feature<T>,E> mapFunc)	Creates a new feature-list by filtering an iterable and then mapping it to a feature
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.mapFromRange(int startInclusive, int endExclusive, IntFunction<Feature<T>> mapFunc)	Creates a new feature-list by mapping integers (from a range) each to a feature
static <T extends FeatureInput, E extends Exception> FeatureList<T>	FeatureListFactory.mapFromRangeOptional(int startInclusive, int endExclusive, Class<? extends Exception> throwableClass, CheckedIntFunction<Optional<Feature<T>>,E> mapFunc)	Creates a new feature-list by mapping integers (from a range) each to an optional feature
void	Define.setList(List<Feature<T>> list)	The list that specifies features.
void	FeatureList.setList(List<Feature<T>> list)	The list of features.
FeatureList<T>	FeatureList.sort(Comparator<Feature<T>> comparator)	Creates a new feature-list sorted in a particular order.
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.wrapDuplicate(List<Feature<T>> list)	Wraps an existing list, WITHOUT reusing the list in the internals of the FeatureList i.e. create a new list internally
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.wrapReuse(List<Feature<T>> list)	Wraps an existing list, reusing the list in the internals of the FeatureList

Constructors in org.anchoranalysis.feature.bean.list with parameters of type Feature

Modifier	Constructor	Description
	Define(Feature<T> feature)	Create from a single Feature.
	DefineSingle(Feature<T> item)	Creates a new DefineSingle instance.
	FeatureList(Feature<T> feature)	Creates with a single Feature.

Constructor parameters in org.anchoranalysis.feature.bean.list with type arguments of type Feature

Modifier	Constructor	Description
	Define(List<Feature<T>> list)	Creates a new Define instance.
	FeatureList(List<Feature<T>> list)	Wraps an existing list.
	FeatureList(Stream<Feature<T>> stream)	Creates from a stream of Features.

Uses of Feature in org.anchoranalysis.feature.bean.operator

Subclasses of Feature in org.anchoranalysis.feature.bean.operator

Modifier and Type	Class	Description
class	Constant<T extends FeatureInput>	A constant value that is entirely invariant to the feature-input.
class	FeatureBinary<T extends FeatureInput>	A base class for a Feature that is a binary-function of the results from two other features.
class	FeatureFromList<T extends FeatureInput>	A base class for a Feature that is a function of the results from a list of other features.
class	FeatureGeneric<T extends FeatureInput>	Base class for features that broadly accept any type of feature-input.
class	FeatureUnary<T extends FeatureInput,S extends FeatureInput>	A feature that contains another feature as a bean-parameter.
class	FeatureUnaryGeneric<T extends FeatureInput>	A FeatureUnary that accepts any FeatureInput irrespective of type.
class	Reference<T extends FeatureInput>	Uses another feature to calculate the value.
class	Sum<T extends FeatureInput>	Sums the results after calculating a list of Features.

Methods in org.anchoranalysis.feature.bean.operator that return Feature

Modifier and Type	Method	Description
Feature<S>	FeatureUnary.getItem()
Feature<T>	FeatureBinary.getItem1()	Provides the first value for the binary-function.
Feature<T>	FeatureBinary.getItem2()	Provides the second value for the binary-function.

Methods in org.anchoranalysis.feature.bean.operator that return types with arguments of type Feature

Modifier and Type	Method	Description
List<Feature<T>>	FeatureFromList.getList()	The features whose results will be somehow combined, to form the result of this class.

Methods in org.anchoranalysis.feature.bean.operator with parameters of type Feature

Modifier and Type	Method	Description
void	FeatureUnary.setItem(Feature<S> item)
void	FeatureBinary.setItem1(Feature<T> item1)	Provides the first value for the binary-function.
void	FeatureBinary.setItem2(Feature<T> item2)	Provides the second value for the binary-function.

Method parameters in org.anchoranalysis.feature.bean.operator with type arguments of type Feature

Modifier and Type	Method	Description
void	FeatureFromList.setList(List<Feature<T>> list)	Assigns the list of features to use.

Constructors in org.anchoranalysis.feature.bean.operator with parameters of type Feature

Modifier	Constructor	Description
	FeatureUnary(Feature<S> item)
protected	FeatureUnaryGeneric(Feature<T> feature)	Create with a specific feature, that provides the input to the unary function.

Uses of Feature in org.anchoranalysis.feature.bean.provider

Methods in org.anchoranalysis.feature.bean.provider that return Feature

Modifier and Type	Method	Description
Feature<T>	FeatureProviderDefine.get()
Feature<FeatureInput>	FeatureProviderReference.get()
Feature<T>	FeatureProviderDefine.getFeature()	The feature to provide.

Methods in org.anchoranalysis.feature.bean.provider with parameters of type Feature

Modifier and Type	Method	Description
void	FeatureProviderDefine.setFeature(Feature<T> feature)	The feature to provide.

Constructors in org.anchoranalysis.feature.bean.provider with parameters of type Feature

Modifier	Constructor	Description
	FeatureProviderDefine(Feature<T> feature)	Creates a new FeatureProviderDefine instance.

Uses of Feature in org.anchoranalysis.feature.bean.results

Subclasses of Feature in org.anchoranalysis.feature.bean.results

Modifier and Type	Class	Description
class	Count	The sum of the results from a particular feature.
class	FeatureResults	Features that process ResultsVectorList.
class	FeatureResultsStatistic	Base class for an instance of FeatureResults that calculating a statistic across all results in the ResultsVectorList for a particular feature-value.
class	Maximum	The maximum of the results from a particular feature.
class	Mean	The mean of the results from a particular feature.
class	Minimum	The minimum of the results from a particular feature.
class	Quantile	A quantile of the results from a particular feature.
class	StandardDeviation	The standard-deviation of the results from a particular feature.
class	Sum	The sum of the results from a particular feature.

Uses of Feature in org.anchoranalysis.feature.calculate

Methods in org.anchoranalysis.feature.calculate with parameters of type Feature

Modifier and Type	Method	Description
double	FeatureCalculationInput.calculate(Feature<T> feature)	Calculates the result of a feature using this input.
double	FeatureCalculator.calculate(Feature<T> feature, FeatureCalculationInput<T> input)	Calculate the result of feature with a particular input.

Uses of Feature in org.anchoranalysis.feature.calculate.cache

Methods in org.anchoranalysis.feature.calculate.cache with parameters of type Feature

Modifier and Type	Method	Description
<S extends FeatureInput> double	CalculateForChild.calculate(Feature<S> feature, CalculationPart<S,T> calculation, ChildCacheName childCacheName)	Calculates a feature in a child-cache using a new input created from a CalculationPart.
<S extends FeatureInput> double	CalculateForChild.calculate(Feature<S> feature, S input, ChildCacheName childCacheName)	Calculates a feature in a child-cache.

Uses of Feature in org.anchoranalysis.feature.input

Methods in org.anchoranalysis.feature.input with parameters of type Feature

Modifier and Type	Method	Description
static Class<? extends FeatureInput>	FeatureInputType.prefer(Feature<?> feature1, Feature<?> feature2)	Like FeatureInputType.prefer(Class, Class) but accepts features directly as input.

Method parameters in org.anchoranalysis.feature.input with type arguments of type Feature

Modifier and Type	Method	Description
static <T extends FeatureInput> Class<? extends FeatureInput>	FeatureInputType.determineInputType(List<Feature<T>> list)	Finds a common input-type for classes in the list, throwing an exception if any two types aren't compatible.

Uses of Feature in org.anchoranalysis.feature.name

Methods in org.anchoranalysis.feature.name with parameters of type Feature

Modifier and Type	Method	Description
static void	AssignFeatureNameUtilities.assignWithPrefix(Feature<? extends FeatureInput> feature, String existingName, String prefix)	Assigns a new custom-name to a feature, by combining an existing-name with a prefix.

Uses of Feature in org.anchoranalysis.feature.session

Methods in org.anchoranalysis.feature.session with parameters of type Feature

Modifier and Type	Method	Description
double	SessionInputSequential.calculate(Feature<T> feature)
static <T extends FeatureInput> double	FeatureSession.calculateWith(Feature<T> feature, T input, Logger logger)	Starts a feature-session for a single feature - and performs a calculation.
static <T extends FeatureInput> FeatureCalculatorSingle<T>	FeatureSession.with(Feature<T> feature, Logger logger)	Starts a feature-session for a single feature.
static <T extends FeatureInput> FeatureCalculatorSingle<T>	FeatureSession.with(Feature<T> feature, FeatureInitialization initialization, SharedFeatures sharedFeatures, Logger logger)	Starts a feature-session for a single feature, with specific initialization.
static <T extends FeatureInput> FeatureCalculatorSingle<T>	FeatureSession.with(Feature<T> feature, SharedFeatures sharedFeatures, Logger logger)	Starts a feature-session for a single feature, with default initialization.

Uses of Feature in org.anchoranalysis.feature.shared

Methods in org.anchoranalysis.feature.shared that return Feature

Modifier and Type	Method	Description
Feature<T>	SharedFeaturesSubset.getException(String name)	Gets a feature by name, throwing an exception if it doesn't exist.

Methods in org.anchoranalysis.feature.shared that return types with arguments of type Feature

Modifier and Type	Method	Description
Optional<Feature<FeatureInput>>	SharedFeatures.getOptional(String key)
Iterator<NameValue<Feature<FeatureInput>>>	SharedFeatures.iterator()

Methods in org.anchoranalysis.feature.shared with parameters of type Feature

Modifier and Type	Method	Description
boolean	SharedFeatures.contains(Feature<FeatureInput> feature)	Whether a particular feature is contained in this instance.

Method parameters in org.anchoranalysis.feature.shared with type arguments of type Feature

Modifier and Type	Method	Description
void	SharedFeaturesSubset.forEach(Consumer<Feature<T>> consumer)	Iterates over each feature in the instance.

Constructor parameters in org.anchoranalysis.feature.shared with type arguments of type Feature

Modifier	Constructor	Description
	SharedFeaturesSubset(NameValueMap<Feature<T>> map)	Creates a new SharedFeaturesSubset instance.

Uses of Feature in org.anchoranalysis.feature.store

Methods in org.anchoranalysis.feature.store that return types with arguments of type Feature

Modifier and Type	Method	Description
NamedBean<Feature<T>>	NamedFeatureStore.get(int index)	Gets a feature at a particular position.
NamedBean<Feature<T>>	NamedFeatureStore.get(String name)	Gets a feature corresponding to a particular name.
Iterator<NamedBean<Feature<T>>>	NamedFeatureStore.iterator()

Methods in org.anchoranalysis.feature.store with parameters of type Feature

Modifier and Type	Method	Description
void	NamedFeatureStore.add(String name, Feature<T> feature)	Adds a named-feature to the store.

Uses of Feature in org.anchoranalysis.image.feature.bean

Subclasses of Feature in org.anchoranalysis.image.feature.bean

Modifier and Type	Class	Description
class	FeatureEnergy<T extends FeatureInputEnergy>	A base class for features that only require an input that extends from FeatureInputEnergy
class	FeatureHistogram	A base class for features that accept a histogram as input.
class	FeatureImageMetadata	A base class for a feature that accepts a FeatureInputImageMetadata as input.
class	FeatureStack	An abstract base class for features that operate on image stacks.

Uses of Feature in org.anchoranalysis.image.feature.bean.evaluator

Methods in org.anchoranalysis.image.feature.bean.evaluator that return Feature

Modifier and Type	Method	Description
Feature<T>	FeatureEvaluator.getFeature()	The single feature that will be calculated (possibly repeatedly) in the session.

Methods in org.anchoranalysis.image.feature.bean.evaluator with parameters of type Feature

Modifier and Type	Method	Description
void	FeatureEvaluator.setFeature(Feature<T> feature)	The single feature that will be calculated (possibly repeatedly) in the session.

Uses of Feature in org.anchoranalysis.image.feature.bean.histogram

Subclasses of Feature in org.anchoranalysis.image.feature.bean.histogram

Modifier and Type	Class	Description
class	FeatureHistogramStatistic	Base class for FeatureHistogram implementations that calculate a statistic from the Histogram.
class	Mean	Calculates the mean value of a histogram.

Uses of Feature in org.anchoranalysis.image.feature.bean.object.collection

Subclasses of Feature in org.anchoranalysis.image.feature.bean.object.collection

Modifier and Type	Class	Description
class	FeatureObjectCollection	A base class for a feature that accepts a ObjectCollection as input.

Uses of Feature in org.anchoranalysis.image.feature.bean.object.pair

Subclasses of Feature in org.anchoranalysis.image.feature.bean.object.pair

Modifier and Type	Class	Description
class	FeatureDeriveFromPair	Base class for evaluating FeaturePairObjects in terms of another feature that operates on elements (first, second, merged etc.).
class	FeaturePairObjects	An abstract base class for features that operate on pairs of objects.
class	First	Evaluates a feature on the first object in a pair of objects.
class	Merged	Evaluates a feature on the merged object created from a pair of objects.
class	Minimum	Calculates the minimum value of a feature applied to both objects in a pair.
class	RatioFirstToSecond	Ratio of first-object to second-object in a pair.
class	Second	Evaluates a feature on the second object in a pair of objects.
class	SubtractSecondFromFirst	Subtract second-object from first-object in a pair.

Methods in org.anchoranalysis.image.feature.bean.object.pair that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputSingleObject>	FeatureDeriveFromPair.getItem()	The feature to be applied to individual objects.

Methods in org.anchoranalysis.image.feature.bean.object.pair with parameters of type Feature

Modifier and Type	Method	Description
void	FeatureDeriveFromPair.setItem(Feature<FeatureInputSingleObject> item)	The feature to be applied to individual objects.

Constructors in org.anchoranalysis.image.feature.bean.object.pair with parameters of type Feature

Modifier	Constructor	Description
	FeatureDeriveFromPair(Feature<FeatureInputSingleObject> item)	Creates a new FeatureDeriveFromPair instance.
	First(Feature<FeatureInputSingleObject> item)	Creates a new instance that will evaluate the given feature on the first object of a pair.
	Merged(Feature<FeatureInputSingleObject> item)	Creates a new instance that will evaluate the given feature on the merged object of a pair.
	Minimum(Feature<FeatureInputSingleObject> item)	Creates a new instance that will calculate the minimum feature value from a pair of objects.
	Second(Feature<FeatureInputSingleObject> item)	Creates a new instance that will evaluate the given feature on the second object of a pair.

Uses of Feature in org.anchoranalysis.image.feature.bean.object.single

Subclasses of Feature in org.anchoranalysis.image.feature.bean.object.single

Modifier and Type	Class	Description
class	CenterOfGravity	Calculates the center of gravity of a single object along a specified axis.
class	FeatureSingleObject	An abstract base class for features that operate on a single object.
class	NumberVoxels	Calculates the number of voxels in a single object.

Uses of Feature in org.anchoranalysis.image.feature.bean.physical

Subclasses of Feature in org.anchoranalysis.image.feature.bean.physical

Modifier and Type	Class	Description
class	ConvertFromPhysicalVolume<T extends FeatureInputWithResolution>	Converts a feature from physical volume units to voxel units.
class	ConvertToPhysicalAreaXY<T extends FeatureInputWithResolution>	Converts a feature value representing area in pixel units to physical area units in an isometric XY plane.
class	ConvertToPhysicalDistance<T extends FeatureInputWithResolution>	Converts a distance feature to physical units along a specified direction.
class	ConvertToPhysicalVolume<T extends FeatureInputWithResolution>	Converts a feature value representing volume in voxel units to physical volume units.
class	FeatureConvertUnits<T extends FeatureInputWithResolution>	An abstract base class for features that convert units between physical and voxel space.
class	WithResolutionBase<T extends FeatureInputWithResolution>	Base class for a feature that requires input resolution to be calculated.

Constructors in org.anchoranalysis.image.feature.bean.physical with parameters of type Feature

Modifier	Constructor	Description
	ConvertToPhysicalDistance(Feature<T> feature, SpatialUnits.UnitSuffix unitType, DirectionVector directionVector)	Creates a new instance with specified feature, unit type, and direction vector.
protected	FeatureConvertUnits(Feature<T> feature, SpatialUnits.UnitSuffix unitType)	Constructs a FeatureConvertUnits with a specified feature and unit type.
protected	WithResolutionBase(Feature<T> feature)	Creates a new instance with a specified feature.

Uses of Feature in org.anchoranalysis.mpp.feature.bean.energy.element

Subclasses of Feature in org.anchoranalysis.mpp.feature.bean.energy.element

Modifier and Type	Class	Description
class	AsSingle	Extracts one of the memos from the pair, and processes as a FeatureSingleMemo
class	FeatureAllMemo	An abstract base class for features that operate on FeatureInputAllMemo.
class	FeaturePairMemo	An abstract base class for features that operate on pairs of memoized objects.
class	FeatureSingleMemo	An abstract base class for features that operate on a single memoized object.

Uses of Feature in org.anchoranalysis.mpp.feature.energy.scheme

Methods in org.anchoranalysis.mpp.feature.energy.scheme that return types with arguments of type Feature

Modifier and Type	Method	Description
List<NamedBean<Feature<FeatureInputStack>>>	EnergyScheme.getListImageFeatures()	A list of features of the image that are calculated first, and exposed to the other features as parameters.

Constructor parameters in org.anchoranalysis.mpp.feature.energy.scheme with type arguments of type Feature

Modifier	Constructor	Description
	EnergyScheme(FeatureList<FeatureInputSingleMemo> individual, FeatureList<FeatureInputPairMemo> pair, FeatureList<FeatureInputAllMemo> all, RegionMap regionMap, AddCriteriaPair pairAddCriteria, Optional<DictionaryProvider> dictionary, List<NamedBean<Feature<FeatureInputStack>>> listImageFeatures)	Creates an energy scheme with the specified features, region map, and additional options.

Uses of Feature in org.anchoranalysis.plugin.image.bean.channel.provider.score

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.score that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputSingleObject>	ScoreObjects.getFeature()	Feature that calculates the score for an object.

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.score with parameters of type Feature

Modifier and Type	Method	Description
void	ScoreObjects.setFeature(Feature<FeatureInputSingleObject> feature)	Feature that calculates the score for an object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.dimensions

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.dimensions

Modifier and Type	Class	Description
class	Area<T extends FeatureInputEnergy>	Area of the stack (XY dimensions only, Z dimension is not considered).
class	Extent<T extends FeatureInputEnergy>	Width/height/depth of energy-stack in pixels depending on axis.
class	ForSpecificAxis<T extends FeatureInputEnergy>	Dimensions-calculation for one specific axis only.
class	FromDimensionsBase<T extends FeatureInputDimensions>	Base class for features that are calculated from Dimensions.
class	Volume<T extends FeatureInputEnergy>	Calculates the volume (x, y and z dimensions) of the scene from the dimensions
class	VoxelPhysicalSize<T extends FeatureInputEnergy>	The physical size of a pixel in a specific dimension.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.histogram.statistic

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.histogram.statistic

Modifier and Type	Class	Description
class	CoefficientOfVariation	Calculates the coefficient of variation of all the values in the histogram.
class	Count	Counts the number of items in a histogram (posssibly in relation to a threshold: above, below etc.)
class	Kurtosis	Calculates the kurtosis of all the values in the histogram.
class	Maximum	Calculates the maximum value in a histogram.
class	MeanRaisedToPower	Calculates the mean value in a Histogram, and raises it to a power.
class	Median	Calculates the median value in a Histogram.
class	Minimum	Calculates the minimum value in a Histogram.
class	Mode	Calculates the skewness of all the values in the histogram.
class	NumberDistinctValues	Number of unique values in histogram.
class	Quantile	Calculates a specified quantile value from a Histogram.
class	Range	The range (difference in values) between two quantiles
class	RatioNonMode	Calculates the ratio of non-mode pixels to total pixels in a Histogram.
class	Skewness	Calculates the skewness of all the values in the histogram.
class	StandardDeviation	Calculates the standard deviation of values in a Histogram.
class	Sum	Calculates the sum of all values in a Histogram.
class	TotalCount	Calculates the total count of all entries in a Histogram.
class	Variance	Calculates the variance of all the values in the histogram.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.histogram.threshold

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.histogram.threshold

Modifier and Type	Class	Description
class	LevelFromHistogram	Calculates a level (a threshold-value) from a histogram.
class	RatioThreshold	Calculates the ratio of values in a Histogram that satisfy a specified threshold condition.
class	ThresholdHistogram	Thresholds the histogram (using a weightedOtsu) and then applies a feature to the thresholded version.

Methods in org.anchoranalysis.plugin.image.feature.bean.histogram.threshold that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputHistogram>	ThresholdHistogram.getItem()

Methods in org.anchoranalysis.plugin.image.feature.bean.histogram.threshold with parameters of type Feature

Modifier and Type	Method	Description
void	ThresholdHistogram.setItem(Feature<FeatureInputHistogram> item)

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.list.pair

Methods in org.anchoranalysis.plugin.image.feature.bean.list.pair that return Feature

Modifier and Type	Method	Description
protected abstract Feature<FeatureInputPairObjects>	FeatureListProviderAggregatePair.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)	Creates an aggregate feature from individual features for first, second, and merged objects.
protected Feature<FeatureInputPairObjects>	ReduceFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	ReduceRatioFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	SubtractReducedFromMerged.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)

Methods in org.anchoranalysis.plugin.image.feature.bean.list.pair with parameters of type Feature

Modifier and Type	Method	Description
protected abstract Feature<FeatureInputPairObjects>	FeatureListProviderAggregatePair.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)	Creates an aggregate feature from individual features for first, second, and merged objects.
protected Feature<FeatureInputPairObjects>	ReduceFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	ReduceRatioFirstAndSecond.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected Feature<FeatureInputPairObjects>	SubtractReducedFromMerged.createAggregateFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second, Feature<FeatureInputPairObjects> merged)
protected FeatureFromList<FeatureInputPairObjects>	FeatureListProviderAggregatePair.createReducedFeature(Feature<FeatureInputPairObjects> first, Feature<FeatureInputPairObjects> second)	Creates a reduced feature from features for the first and second objects.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.list.permute

Methods in org.anchoranalysis.plugin.image.feature.bean.list.permute that return Feature

Modifier and Type	Method	Description
protected Feature<T>	PermuteFeatureSequenceInteger.createParam(String suffix, boolean appendNumber)	Creates a parameter feature for the permutation.
Feature<T>	PermuteFeatureBase.getFeature()	The feature to be permuted.

Methods in org.anchoranalysis.plugin.image.feature.bean.list.permute with parameters of type Feature

Modifier and Type	Method	Description
protected PermuteFeature<Integer,T>	PermuteDivideByParam.createDelegate(Feature<T> feature)
protected abstract PermuteFeature<Integer,T>	PermuteFeatureSequenceInteger.createDelegate(Feature<T> feature)	Creates a delegate PermuteFeature for the given feature.
protected PermuteFeature<Integer,T>	PermuteFirstSecondOrder.createDelegate(Feature<T> feature)
protected FeatureList<T>	PermuteFeature.createPermutedFeaturesFor(Feature<T> feature)
protected abstract FeatureList<T>	PermuteFeatureBase.createPermutedFeaturesFor(Feature<T> feature)	Creates permuted features for the given feature.
protected FeatureList<T>	PermuteFeatureSequenceInteger.createPermutedFeaturesFor(Feature<T> feature)
void	PermuteFeatureBase.setFeature(Feature<T> feature)	The feature to be permuted.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.metadata

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.metadata

Modifier and Type	Class	Description
class	BitDepthPerChannel	The bit-depth of the image per channel.
class	NumberChannels	The number of channels in an image.
class	NumberFrames	The number of frames in an image.
class	NumberResolutionLevels	The number of resolution-levels in an image in a file.
class	NumberSeries	The number of series in an image-file.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.collection

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.collection

Modifier and Type	Class	Description
class	NumberObjects	Calculates the number of objects in a FeatureInputObjectCollection.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.pair

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.pair

Modifier and Type	Class	Description
class	Intersection	Finds the intersection of two objects and calculates a feature on it

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.pair.overlap

Modifier and Type	Class	Description
class	CostOverlapWithinMidpointDistance	TODO the center-of-gravity calculation can be turned into a FeatureCalculation which is cacheable
class	OverlapRelative	Expresses the number of intersecting pixels between two objects as a ratio to a denominator.
class	OverlapRelativeToFirst	Calculates the overlap ratio between two objects relative to the size of the first object.
class	OverlapRelativeToMaxVolume	Overlap ratio to the maximum number of pixels
class	OverlapRelativeToMerged	Calculates the overlap ratio between two objects relative to the size of the merged object.
class	OverlapRelativeToSecond	Calculates the overlap ratio between two objects relative to the size of the second object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.pair.touching

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.pair.touching

Modifier and Type	Class	Description
class	HasTouchingVoxels	A simple scheme for counting the touching voxels.
class	NumberTouchingVoxelFaces	A scheme for counting the touching voxels by intersection of object-masks
class	NumberTouchingVoxels	A scheme for counting touching voxels.
class	TouchingVoxels	Base class for features that calculate touching with a dilated bounding box intersection.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single

Modifier and Type	Class	Description
class	ArbitraryInsidePoint	Calculates deterministically a point that is definitely inside the object-mask and outputs a selected axis value.
class	OutlineKernelBase	Base class for features that apply a kernel to the outline of an object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.border

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.border

Modifier and Type	Class	Description
class	AtBorderBase	Base class for features that check if an object is at the border of an image.
class	AtBorderXY	Checks if an object's bounding box is at the border of the image in the XY plane.
class	AtBorderZ	Checks if an object's bounding box is at the border of the image in the Z dimension.
class	NumberVoxelsAtBorder	Calculates the number of voxels at the border of an object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.boundingbox

Modifier and Type	Class	Description
class	BoundingBoxAlongAxisBase	Base class for features that calculate a value along a specific axis of an object's bounding box.
class	BoundingBoxExtentAlongAxis	Calculates the extent of an object's bounding box along a specified axis.
class	BoundingBoxMaximumAlongAxis	Calculates the maximum coordinate of an object's bounding box along a specified axis.
class	BoundingBoxMinimumAlongAxis	Calculates the minimum coordinate of an object's bounding box along a specified axis.
class	BoundingBoxNumberVoxels	Calculates the number of voxels in the bounding box of an object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.energy

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.energy

Modifier and Type	Class	Description
class	CountEqual	Counts the number of voxels in an object that have a specific intensity value in a channel.
class	NumberNeighboringVoxels	Calculates the number of voxels on the object that have a neighbor.
class	SpecificEnergyChannelBase	A base class for features that operate on a specific channel from the energy stack.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity

Modifier and Type	Class	Description
class	FeatureEnergyChannel	A feature that uses a channel from the energy-stack as identified by an index.
class	Intensity	Calculates a statistic from the intensity values covered by a single object-mask in a channel.
class	IntensityMeanMaxSlice	Calculates the maximum mean intensity across all slices of an object in a channel.
class	IntensityMeanShell	Constructs a 'shell' around an object by a number of dilation/erosion operations (not including the original object-mask) and measures the mean intensity of this shell
class	IntensityMeanShellBase	Constructs a shell around an object-mask using a standard dilation and erosion process.
class	IntensityMeanShellMaxSlice	Constructs a 'shell' around an object by a number of dilation/erosion operations (not including the original object-mask) and measures the mean intensity of this shell
class	TextureScore	From Page 727 from Lin et al (A Multi-Model Approach to Simultaneous Segmentation and Classification of Heterogeneous Populations of Cell Nuclei

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputHistogram>	Intensity.getItem()	Feature to apply to the histogram

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity with parameters of type Feature

Modifier and Type	Method	Description
void	Intensity.setItem(Feature<FeatureInputHistogram> item)	Feature to apply to the histogram

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.intensity.gradient

Modifier and Type	Class	Description
class	GradientMagnitude	Calculates the mean of the intensity-gradient defined by multiple Energy channels in a particular direction
class	GradientMeanForAxis	Calculates the mean of the intensity-gradient defined by multiple Energy channels in a particular direction
class	IntensityGradientBase	Base class for features that calculate intensity gradients from multiple channels.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.moments

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.moments

Modifier and Type	Class	Description
class	ImageMomentsBase	A base class for features that are calculated using image-moments.
class	PrincipalAxisEccentricity	Calculates the eccentricity of the Principal Axes (as defined by Image Moments).
class	PrincipalAxisLength	The length of a principal-axis (as defined by Image Moments).
class	PrincipalAxisOrientation	An element from orientation of a principal-axis (as defined by Image Moments).
class	RatioPrincipalAxisLength	Calculates the ratio of prinicpal-axis length using Image Moments.
class	SpecificAxisBase	A feature based on one specific principal-axis as identified by image moments.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological

Modifier and Type	Class	Description
class	DerivedObject	A base class for features that operate on a derived object mask and calculate a feature on it.
class	Erode	A feature that erodes an object mask and then calculates another feature on the eroded object.
class	NumberRemovedVoxelsAfterClosing	How many pixels are removed after a morphological closing operation on the object-mask.
class	Shell	Creates a shell around an ObjectMask by applying morphological operations.

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputSingleObject>	DerivedObject.getItem()	The feature to calculate on the derived object.

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.morphological with parameters of type Feature

Modifier and Type	Method	Description
void	DerivedObject.setItem(Feature<FeatureInputSingleObject> item)	The feature to calculate on the derived object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.shape

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.shape

Modifier and Type	Class	Description
class	ObjectRadiusStandardDeviation	Calculates the standard deviation of distances from surface voxels to the centroid of an ObjectMask.
class	ShapeRegularityCenterSlice	Calculates the shape regularity of the center slice of an ObjectMask.
class	ShapeRegularityMaximumIntensityProjection	Calculates the shape regularity of the maximum intensity projection of an ObjectMask.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.shared

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.shared

Modifier and Type	Class	Description
class	PairedWithMask	Evaluates the object as a pair-feature together with the binary-mask from the shared objects.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting

Modifier and Type	Class	Description
class	FeatureIntersectingObjects	An abstract base class for features that calculate values based on intersecting objects.
class	FeatureIntersectingObjectsSingleElement	A feature that calculates a value based on intersecting objects, considering each intersecting object individually.
class	FeatureIntersectingObjectsThreshold	An abstract feature that calculates a value based on intersecting objects, considering each intersecting object individually and applying a threshold.
class	MaxFeatureIntersectingObjects	1.
class	MinFeatureIntersectingObjectsAboveThreshold	1.
class	NumberIntersectingObjects	A feature that calculates the number of objects intersecting with the input object.
class	NumberIntersectingObjectsAboveThreshold	1.

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputPairObjects>	FeatureIntersectingObjectsSingleElement.getItem()	The feature to calculate for each intersecting object pair.

Methods in org.anchoranalysis.plugin.image.feature.bean.object.single.shared.intersecting with parameters of type Feature

Modifier and Type	Method	Description
void	FeatureIntersectingObjectsSingleElement.setItem(Feature<FeatureInputPairObjects> item)	The feature to calculate for each intersecting object pair.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.slice

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.slice

Modifier and Type	Class	Description
class	MaximumNumberContourVoxelsOnSlice	Maximum number of voxels on any slice's contour (edge voxels) across all slices.
class	MaximumNumberVoxelsOnSlice	Maximum number of voxels in the object-mask across all slices.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.surface

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.object.single.surface

Modifier and Type	Class	Description
class	SurfaceNumberVoxelFaces	The number of voxel-faces along the surface (the faces of each voxel that touch outside)
class	SurfaceNumberVoxels	The number of voxels on the surface (all voxels on the exterior of the object)
class	SurfaceNumberVoxelsBase	A base class for features that calculate the number of voxels on the surface of an object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.physical

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.physical

Modifier and Type	Class	Description
class	UnitsWithinRange<T extends FeatureInputWithResolution>	Checks if a value lies within a range defined by units (a minimum and maximum boundary)

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.shared

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.shared

Modifier and Type	Class	Description
class	ParamFromCollection<T extends FeatureInput>	Retrieves a parameter as stored in a Dictionary in SharedObjects.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.shared.object

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.shared.object

Modifier and Type	Class	Description
class	FeatureSingleObjectFromShared<T extends FeatureInputEnergy>	Calculates object-masks from entities in shared, using the feature-input only for an energy-stack.
class	MaskAsSingleObject<T extends FeatureInputEnergy>	Calculates a feature, treating a mask as a single-object on the energy-stack.
class	MeanAcrossObjects<T extends FeatureInputEnergy>	Calculates the mean of a feature applied to each connected component
class	ObjectAggregationBase<T extends FeatureInputEnergy>	Calculates a feature for a set of objects using this stack as an energy-stack, and aggregates.
class	QuantileAcrossObjects<T extends FeatureInputEnergy>	Calculates the quantile of a feature applied to each connected component

Methods in org.anchoranalysis.plugin.image.feature.bean.shared.object that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputSingleObject>	FeatureSingleObjectFromShared.getItem()	The feature to be calculated on a single object.

Methods in org.anchoranalysis.plugin.image.feature.bean.shared.object with parameters of type Feature

Modifier and Type	Method	Description
protected abstract double	FeatureSingleObjectFromShared.calc(CalculateForChild<T> calculateForChild, Feature<FeatureInputSingleObject> featureForSingleObject)	Calculates the feature value for a single object.
protected double	MaskAsSingleObject.calc(CalculateForChild<T> calculateForChild, Feature<FeatureInputSingleObject> featureForSingleObject)
protected double	ObjectAggregationBase.calc(CalculateForChild<T> calculateForChild, Feature<FeatureInputSingleObject> featureForSingleObject)
void	FeatureSingleObjectFromShared.setItem(Feature<FeatureInputSingleObject> item)	The feature to be calculated on a single object.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.stack.intensity

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.stack.intensity

Modifier and Type	Class	Description
class	DataTypeMaxIntensity<T extends FeatureInputEnergy>	The maximum-intensity allowed by the data-type of the stack.
class	Intensity	The intensity of a particular channel of the stack, by default the mean-intensity.
class	NumberChannels	The number of channels in an image-stack.

Methods in org.anchoranalysis.plugin.image.feature.bean.stack.intensity that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputHistogram>	Intensity.getItem()	Feature to apply to the histogram.

Methods in org.anchoranalysis.plugin.image.feature.bean.stack.intensity with parameters of type Feature

Modifier and Type	Method	Description
void	Intensity.setItem(Feature<FeatureInputHistogram> item)	Feature to apply to the histogram.

Uses of Feature in org.anchoranalysis.plugin.image.feature.bean.stack.object

Subclasses of Feature in org.anchoranalysis.plugin.image.feature.bean.stack.object

Modifier and Type	Class	Description
class	AsObjectMask	Treats a channel as an object-mask, assuming binary values of 0 and 255 and calls an object-mask feature
class	QuantileAcrossConnectedComponents	Calculates the median of a feature applied to each connected component

Methods in org.anchoranalysis.plugin.image.feature.bean.stack.object that return Feature

Modifier and Type	Method	Description
Feature<FeatureInputSingleObject>	AsObjectMask.getItem()
Feature<FeatureInputSingleObject>	QuantileAcrossConnectedComponents.getItem()

Methods in org.anchoranalysis.plugin.image.feature.bean.stack.object with parameters of type Feature

Modifier and Type	Method	Description
void	AsObjectMask.setItem(Feature<FeatureInputSingleObject> item)
void	QuantileAcrossConnectedComponents.setItem(Feature<FeatureInputSingleObject> item)

Uses of Feature in org.anchoranalysis.plugin.image.feature.object.calculation.delegate

Methods in org.anchoranalysis.plugin.image.feature.object.calculation.delegate with parameters of type Feature

Modifier and Type	Method	Description
static <S extends FeatureInput, T extends FeatureInput, U> double	CalculateInputFromDelegateOption.calc(FeatureCalculationInput<T> input, CalculationPart<U,T> delegate, Function<ResolvedPart<U,T>,CalculateInputFromDelegateOption<S,T,U>> createFromDelegate, Feature<S> feature, ChildCacheName cacheName, double emptyValue)	Calculates a feature using a cached-calculation as delegate.

Uses of Feature in org.anchoranalysis.plugin.opencv.bean.feature

Subclasses of Feature in org.anchoranalysis.plugin.opencv.bean.feature

Modifier and Type	Class	Description
class	HOGFeature	One part of a Histogram of Oriented Gradients descriptor, as applied to an image stack.

Uses of Feature in org.anchoranalysis.plugin.operator.feature.bean

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.bean

Modifier and Type	Class	Description
class	FromDictionary<T extends FeatureInputDictionary>	Extracts a key-value from a Dictionary as a double.
class	WithValueBase<T extends FeatureInput>	A base class for operations that use a specified constant value in combination with a feature.

Uses of Feature in org.anchoranalysis.plugin.operator.feature.bean.arithmetic

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.bean.arithmetic

Modifier and Type	Class	Description
class	AbsoluteValue<T extends FeatureInput>	A feature that calculates the absolute value of another feature's result.
class	AddConstantTo<T extends FeatureInput>	A feature that adds a constant value to the result of another feature.
class	ConstantToThePowerOf<T extends FeatureInput>	A feature that raises a constant value to the power of another feature's result.
class	Divide<T extends FeatureInput>	A feature that divides the results of multiple features sequentially.
class	DivideByConstant<T extends FeatureInput>	A feature that divides the result of another feature by a constant value.
class	InvertedMax<T extends FeatureInput>	Finds the repciprocal (multiplicate inverse), but imposes a maximum ceiling via a constant.
class	Multiply<T extends FeatureInput>	A feature that multiplies the results of multiple features together.
class	MultiplyByConstant<T extends FeatureInput>	A feature that multiplies the result of another feature by a constant value.
class	SubtractFrom<T extends FeatureInput>	A feature that subtracts the result of another feature from a constant value.
class	ToThePowerOfConstant<T extends FeatureInput>	A feature that raises the result of another feature to the power of a constant value.

Constructors in org.anchoranalysis.plugin.operator.feature.bean.arithmetic with parameters of type Feature

Modifier	Constructor	Description
	MultiplyByConstant(Feature<T> feature, double value)	Creates a new MultiplyByConstant with a specified feature and constant value.

Uses of Feature in org.anchoranalysis.plugin.operator.feature.bean.conditional

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.bean.conditional

Modifier and Type	Class	Description
class	IfCondition<T extends FeatureInput>	The result of featureCondition is compared to a threshold, and then either the underlying feature is calculated (positive case), or featureElse is (negative case)

Methods in org.anchoranalysis.plugin.operator.feature.bean.conditional that return Feature

Modifier and Type	Method	Description
Feature<T>	IfCondition.getFeatureCondition()
Feature<T>	IfCondition.getFeatureElse()

Methods in org.anchoranalysis.plugin.operator.feature.bean.conditional with parameters of type Feature

Modifier and Type	Method	Description
void	IfCondition.setFeatureCondition(Feature<T> featureCondition)
void	IfCondition.setFeatureElse(Feature<T> featureElse)

Uses of Feature in org.anchoranalysis.plugin.operator.feature.bean.list

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.bean.list

Modifier and Type	Class	Description
class	Maximum<T extends FeatureInput>	A feature that calculates the maximum value from a list of features.
class	Mean<T extends FeatureInput>	Arithmetic mean of a list of features
class	MeanGeometric<T extends FeatureInput>	A feature that calculates the geometric mean of a list of features.
class	Minimum<T extends FeatureInput>	A feature that calculates the minimum value from a list of features.

Uses of Feature in org.anchoranalysis.plugin.operator.feature.bean.range

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.bean.range

Modifier and Type	Class	Description
class	CompareWithRange<T extends FeatureInput>	Compares a value with a range, returning specified constants if its inside the range, below it or above it
class	CompareWithRangeFeature<T extends FeatureInput>	Like CompareWithRange but uses features to calculate boundary values
class	IfConditionWithinRange<T extends FeatureInput>	Calculates a value if a condition lies within a certain range, otherwise returns constants
class	IfOutsideRange<T extends FeatureInput>	Clamps a feature value if it lies outside a specified range.
class	NormalizedRange<T extends FeatureInput>	The range of two feature values (i.e. max - min), divided by their mean.
class	Range<T extends FeatureInput>	Calculates the statistical range between two feature values, with optional weighting.
class	RangeCompareBase<T extends FeatureInput>	A base class for features that compare a value against a range and return different results based on the comparison.
class	RangeCompareFromScalars<T extends FeatureInput>	A base class for setting the boundaries of a range using constant scalar values.

Methods in org.anchoranalysis.plugin.operator.feature.bean.range that return Feature

Modifier and Type	Method	Description
protected Feature<T>	CompareWithRange.featureToCalcInputValue()
protected Feature<T>	CompareWithRangeFeature.featureToCalcInputValue()
protected Feature<T>	IfConditionWithinRange.featureToCalcInputValue()
protected Feature<T>	IfOutsideRange.featureToCalcInputValue()
protected abstract Feature<T>	RangeCompareBase.featureToCalcInputValue()	Specifies which feature to calculate the input value.
Feature<T>	IfConditionWithinRange.getFeatureCondition()	Calculates value for the condition - which is checked if it lies within a certain range
Feature<T>	CompareWithRangeFeature.getMax()	Calculates maximally-allowed range boundary
Feature<T>	CompareWithRangeFeature.getMin()	Calculates minimally-allowed range boundary

Methods in org.anchoranalysis.plugin.operator.feature.bean.range with parameters of type Feature

Modifier and Type	Method	Description
void	IfConditionWithinRange.setFeatureCondition(Feature<T> featureCondition)	Calculates value for the condition - which is checked if it lies within a certain range
void	CompareWithRangeFeature.setMax(Feature<T> max)	Calculates maximally-allowed range boundary
void	CompareWithRangeFeature.setMin(Feature<T> min)	Calculates minimally-allowed range boundary

Uses of Feature in org.anchoranalysis.plugin.operator.feature.bean.replace

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.bean.replace

Modifier and Type	Class	Description
class	ReplaceInfinity<T extends FeatureInput>	Replaces infinite values in a feature's result with a specified replacement value.
class	ReplaceNaN<T extends FeatureInput>	Replaces NaN (Not a Number) values in a feature's result with a specified replacement value.
class	ReplaceUnusualValue<T extends FeatureInput>	Calculates the underlying feature, but replaces the result with a constant if it is an "unusual" value.

Uses of Feature in org.anchoranalysis.plugin.operator.feature.bean.statistics

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.bean.statistics

Modifier and Type	Class	Description
class	GaussianCumulative<T extends FeatureInput>	Calculates a score between 0 and 1 based on the Cumulative Distribution Function (CDF) of a Gaussian distribution.
class	StatisticalBase<T extends FeatureInput>	Calculates a score based upon the statistical mean and standard deviation.
class	ZScore<T extends FeatureInput>	Calculates the Z-score of a value based on the mean and standard deviation.

Methods in org.anchoranalysis.plugin.operator.feature.bean.statistics that return Feature

Modifier and Type	Method	Description
Feature<T>	StatisticalBase.getItemMean()	The Feature used to calculate the mean.
Feature<T>	StatisticalBase.getItemStdDev()	The Feature used to calculate the standard deviation.

Methods in org.anchoranalysis.plugin.operator.feature.bean.statistics with parameters of type Feature

Modifier and Type	Method	Description
void	StatisticalBase.setItemMean(Feature<T> itemMean)	The Feature used to calculate the mean.
void	StatisticalBase.setItemStdDev(Feature<T> itemStdDev)	The Feature used to calculate the standard deviation.

Uses of Feature in org.anchoranalysis.plugin.operator.feature.physical

Subclasses of Feature in org.anchoranalysis.plugin.operator.feature.physical

Modifier and Type	Class	Description
class	ConvertUnits<T extends FeatureInput>	Converts a feature value from one unit type to another.

Uses of Feature in org.anchoranalysis.plugin.points.bean.feature

Subclasses of Feature in org.anchoranalysis.plugin.points.bean.feature

Modifier and Type	Class	Description
class	AxisRatioEllipsoid	Calculates the axis ratio of an Ellipsoid.
class	EllipsoidBase	Base class for features that calculate properties of an Ellipsoid fitted to an object.
class	Ellipsoidicity	Calculates the ellipsoidicity of an object by fitting an Ellipsoid to it.
class	Ellipticity	Calculates the ellipticity of an ObjectMask (on the center of gravity slice if it's a z-stack).

Uses of Feature in org.anchoranalysis.test.feature.plugins

Methods in org.anchoranalysis.test.feature.plugins with parameters of type Feature

Modifier and Type	Method	Description
static <T extends FeatureInput> void	FeatureTestCalculator.assertDoubleResult(String message, Feature<T> feature, T input, double expectedResult)	Asserts that a feature calculation results in an expected double value.
static <T extends FeatureInput> void	FeatureTestCalculator.assertDoubleResult(String message, Feature<T> feature, T input, Optional<SharedObjects> sharedObjects, double expectedResult)	Asserts that a feature calculation results in an expected double value, with shared objects.
static <T extends FeatureInput> void	FeatureTestCalculatorDuo.assertDoubleResult(String message, Feature<T> feature, T inputPositive, T inputNegative, double expectedResultPositive, double expectedResultNegative)	Asserts that a feature calculation results in expected double values for both positive and negative inputs.
static <T extends FeatureInput> void	FeatureTestCalculator.assertIntResult(String message, Feature<T> feature, T input, int expectedResult)	Asserts that a feature calculation results in an expected integer value.
static <T extends FeatureInput> void	FeatureTestCalculator.assertIntResult(String message, Feature<T> feature, T input, Optional<SharedObjects> sharedObjects, int expectedResult)	Asserts that a feature calculation results in an expected integer value, with shared objects.
static <T extends FeatureInput> void	FeatureTestCalculatorDuo.assertIntResult(String message, Feature<T> feature, T inputPositive, T inputNegative, int expectedResultPositive, int expectedResultNegative)	Asserts that a feature calculation results in expected integer values for both positive and negative inputs.

Uses of Feature in org.anchoranalysis.test.feature.plugins.mockfeature

Subclasses of Feature in org.anchoranalysis.test.feature.plugins.mockfeature

Modifier and Type	Class	Description
class	MockFeatureWithCalculation	A feature that returns the number-of-voxels in an object by using am internal mock-calculation.

Methods in org.anchoranalysis.test.feature.plugins.mockfeature that return Feature

Modifier and Type	Method	Description
static Feature<FeatureInputSingleObject>	MockFeatureWithCalculationFixture.createMockFeatureWithCalculation()	Creates a mock feature that counts the number of pixels in an object.
static <T extends FeatureInput> Feature<T>	MockFeatureWithCalculationFixture.createMockFeatureWithCalculation(ToDoubleFunction<T> funcCalculation)	Creates a mock feature with a custom calculation function.