Uses of Class
org.anchoranalysis.image.bean.provider.ChannelProviderUnary

Packages that use ChannelProviderUnary

Package	Description
org.anchoranalysis.plugin.fiji.bean.channel.provider	Implementations of ChannelProvider that use FIJI.
org.anchoranalysis.plugin.image.bean.channel.provider	Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic	Implementations of ChannelProvider that perform arithmetic on voxels in one or more Channels.
org.anchoranalysis.plugin.image.bean.channel.provider.assign	Implementations of ChannelProvider that sets the values of the voxels in a Channel.
org.anchoranalysis.plugin.image.bean.channel.provider.convert	Implementations of ChannelProvider that converts a Channel from one voxel-type to another.
org.anchoranalysis.plugin.image.bean.channel.provider.gradient	Implementations of ChannelProvider that calculate the gradient of a Channel's voxels in one or more dimensions.
org.anchoranalysis.plugin.image.bean.channel.provider.intensity	Implementations of ChannelProvider that manipulate the intensity-values of the voxels of a Channel's voxels.
org.anchoranalysis.plugin.image.bean.channel.provider.mask	Implementations of ChannelProvider that involve conversion from or application of Masks.
org.anchoranalysis.plugin.image.bean.channel.provider.object	Implementations of ChannelProvider that involve conversion from or application of ObjectMasks.
org.anchoranalysis.plugin.image.bean.channel.provider.score	Implementations of ChannelProvider that assign a score to particular subregions of a channel.
org.anchoranalysis.plugin.image.bean.channel.provider.slice	Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.imagej.bean.channel.provider	Implementations of ChannelProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter	Filters using ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments	Non-linear filters using ImageJ that use the statistical moments of the intensity values in the kernel.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank	Non-linear filters using ImageJ that use the statistical rank of the intensity values in the kernel.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.fiji.bean.channel.provider

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.fiji.bean.channel.provider

Modifier and Type	Class and Description
class	AnisotropicDiffusion Performs Perona-Malik Anisotropic Diffusion.
class	MinimumFilter

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider

Modifier and Type	Class and Description
class	Duplicate
class	IfParamEquals
class	UnaryWithObjectsBase
class	UnaryWithValueBase A ChannelProviderUnary which has a scalar value field

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic

Modifier and Type	Class and Description
class	AddConstant
class	ArithmeticWithConstantBase Base-class for operations that perform a binary arithmetic operation with each voxel-value and a constant.
class	ArithmeticWithConstantConditionallyWriteBase
class	Invert Subtracts each voxel from the maximum value for the channel's data type (e.g.
class	MaxWithConstant
class	MinWithConstant
class	MultiplyConstant
class	SubtractFromConstant
class	SubtractMean Subtract the mean (of the entire channel or a masked portion thereof) from every voxel

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.assign

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.assign

Modifier and Type	Class and Description
class	AssignFromChannel Copies the pixels from channelAssignFrom to channel (possibly masking)
class	AssignFromDictionary
class	AssignFromIntersectingObjects Matches source-objects to target objects, based upon intersection, and assigns the value in the respective source object to the target object
class	AssignValue Assigns a constant (scalar) value to the portion of the image covered by a mask

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.convert

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.convert

Modifier and Type	Class and Description
class	Convert<T> Converts a channel by applying a converter (no histogram is involved in the conversion).
class	ConvertBase
class	ConvertWithHistogram<T> Converts a channel to a different voxel data-type by applying a converter with an associated histogram.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.gradient

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.gradient

Modifier and Type	Class and Description
class	GradientBase Base class to calculate the gradient of the voxels in a Channel.
class	GradientBaseAddSum Like GradientBase but allows an arbitrary constant to be added to voxels storing the gradient.
class	GradientForAxis Extracts the gradient in the direction of a particular axis (identified by an index)
class	GradientXY Calculates a Channel's gradient along the x and y axes.
class	Sobel 3x3 Sobel Filter

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.intensity

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.intensity

Modifier and Type	Class and Description
class	Blur Blurs an image using a particular strategy (defaults to a gaussian blur in each slice)
class	IfVoxelZero Creates a new channel which is a merged version of two input channels according to rules.
class	Median Applies a median-filter with square kernel
class	NormalizeDifferenceToMedian Corrects a channel in the following way
class	NormalizeObjectIntensity Rewrites the intensity for each object-mask (assume no overlap) so that its mean is 128
class	QuantileStretch Changes the voxel values to map the range of 0th quantile to xth quantile across the entire voxel data range
class	ScaleXY Scales the channel in the X and Y dimensions.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.mask

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.mask

Modifier and Type	Class and Description
class	UnaryWithMaskBase
class	ZeroOutsideMask Set pixels NOT IN the mask to 0, but keep pixels IN the mask identical.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.object

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.object

Modifier and Type	Class and Description
class	LevelPerObjectBase Creates a channel with a level calculated for each object variously
class	LevelPerObjectIndependently Creates a channel with different threshold-levels for each object, calculating the level only from the histogram of the particular object.
class	LevelPerObjectNeighbors Calculates a threshold-level for each object collectively based on other objects

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.score

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.score

Modifier and Type	Class and Description
class	IdentifyObjects Assigns a unique id number to each object.
class	ScoreObjects

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Modifier and Type	Class and Description
class	ExtractCenterSlice Extracts the slice at the center (rounding down) of the range of z-stacks.
class	ExtractSliceRange Extracts slices from sliceStart (inclusive) to sliceEnd (inclusive).
class	MaximumIntensityProjection
class	MeanIntensityProjection

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider

Modifier and Type	Class and Description
class	BackgroundSubtractor
class	WithFilterBase
class	WithRadiusBase A ChannelProviderUnary with a 'radius' parameter

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter

Modifier and Type	Class and Description
class	EdgeFilterIJ
class	GaussianBlur2D

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments

Modifier and Type	Class and Description
class	MeanFilter2D
class	VarianceFilter2D

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank

Modifier and Type	Class and Description
class	MedianFilter2D
class	MedianFilter3D