Modifier and Type | Class and Description |
---|---|
class |
AnisotropicDiffusion
Performs Perona-Malik Anisotropic
Diffusion.
|
class |
MinimumFilter |
Modifier and Type | Class and Description |
---|---|
class |
Duplicate |
class |
IfParamEquals |
class |
UnaryWithObjectsBase |
class |
UnaryWithValueBase
A
ChannelProviderUnary which has a scalar value field |
Modifier and Type | Class and Description |
---|---|
class |
AddConstant |
class |
ArithmeticWithConstantBase
Base-class for operations that perform a binary arithmetic operation with each voxel-value and a
constant.
|
class |
ArithmeticWithConstantConditionallyWriteBase |
class |
Invert
Subtracts each voxel from the maximum value for the channel's data type (e.g.
|
class |
MaxWithConstant |
class |
MinWithConstant |
class |
MultiplyConstant |
class |
SubtractFromConstant |
class |
SubtractMean
Subtract the mean (of the entire channel or a masked portion thereof) from every voxel
|
Modifier and Type | Class and Description |
---|---|
class |
AssignFromChannel
Copies the pixels from
channelAssignFrom to channel (possibly masking) |
class |
AssignFromDictionary |
class |
AssignFromIntersectingObjects
Matches source-objects to target objects, based upon intersection, and assigns the value in the
respective source object to the target object
|
class |
AssignValue
Assigns a constant (scalar) value to the portion of the image covered by a mask
|
Modifier and Type | Class and Description |
---|---|
class |
Convert<T>
Converts a channel by applying a converter (no histogram is involved in the conversion).
|
class |
ConvertBase |
class |
ConvertWithHistogram<T>
Converts a channel to a different voxel data-type by applying a converter with an associated
histogram.
|
Modifier and Type | Class and Description |
---|---|
class |
GradientBase
Base class to calculate the gradient of the voxels in a
Channel . |
class |
GradientBaseAddSum
Like
GradientBase but allows an arbitrary constant to be added to voxels storing the
gradient. |
class |
GradientForAxis
Extracts the gradient in the direction of a particular axis (identified by an index)
|
class |
GradientXY
Calculates a
Channel 's gradient along the x and y axes. |
class |
Sobel
3x3 Sobel Filter
|
Modifier and Type | Class and Description |
---|---|
class |
Blur
Blurs an image using a particular strategy (defaults to a gaussian blur in each slice)
|
class |
IfVoxelZero
Creates a new channel which is a merged version of two input channels according to rules.
|
class |
Median
Applies a median-filter with square kernel
|
class |
NormalizeDifferenceToMedian
Corrects a channel in the following way
|
class |
NormalizeObjectIntensity
Rewrites the intensity for each object-mask (assume no overlap) so that its mean is 128
|
class |
QuantileStretch
Changes the voxel values to map the range of 0th quantile to xth quantile across the entire voxel
data range
|
class |
ScaleXY
Scales the channel in the X and Y dimensions.
|
Modifier and Type | Class and Description |
---|---|
class |
UnaryWithMaskBase |
class |
ZeroOutsideMask
Set pixels NOT IN the mask to 0, but keep pixels IN the mask identical.
|
Modifier and Type | Class and Description |
---|---|
class |
LevelPerObjectBase
Creates a channel with a level calculated for each object variously
|
class |
LevelPerObjectIndependently
Creates a channel with different threshold-levels for each object, calculating the level only
from the histogram of the particular object.
|
class |
LevelPerObjectNeighbors
Calculates a threshold-level for each object collectively based on other objects
|
Modifier and Type | Class and Description |
---|---|
class |
IdentifyObjects
Assigns a unique id number to each object.
|
class |
ScoreObjects |
Modifier and Type | Class and Description |
---|---|
class |
ExtractCenterSlice
Extracts the slice at the center (rounding down) of the range of z-stacks.
|
class |
ExtractSliceRange
Extracts slices from
sliceStart (inclusive) to sliceEnd (inclusive). |
class |
MaximumIntensityProjection |
class |
MeanIntensityProjection |
Modifier and Type | Class and Description |
---|---|
class |
BackgroundSubtractor |
class |
WithFilterBase |
class |
WithRadiusBase
A
ChannelProviderUnary with a 'radius' parameter |
Modifier and Type | Class and Description |
---|---|
class |
EdgeFilterIJ |
class |
GaussianBlur2D |
Modifier and Type | Class and Description |
---|---|
class |
MeanFilter2D |
class |
VarianceFilter2D |
Modifier and Type | Class and Description |
---|---|
class |
MedianFilter2D |
class |
MedianFilter3D |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.