Uses of Class
org.anchoranalysis.image.bean.provider.ChannelProviderUnary

Packages that use ChannelProviderUnary

Package	Description
org.anchoranalysis.plugin.fiji.bean.channel.provider	Implementations of ChannelProvider that use FIJI.
org.anchoranalysis.plugin.image.bean.channel.provider	Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic	Implementations of ChannelProvider that perform arithmetic on voxels in one or more Channels.
org.anchoranalysis.plugin.image.bean.channel.provider.assign	Implementations of ChannelProvider that sets the values of the voxels in a Channel.
org.anchoranalysis.plugin.image.bean.channel.provider.convert	Implementations of ChannelProvider that converts a Channel from one voxel-type to another.
org.anchoranalysis.plugin.image.bean.channel.provider.gradient	Implementations of ChannelProvider that calculate the gradient of a Channel's voxels in one or more dimensions.
org.anchoranalysis.plugin.image.bean.channel.provider.intensity	Implementations of ChannelProvider that manipulate the intensity-values of the voxels of a Channel's voxels.
org.anchoranalysis.plugin.image.bean.channel.provider.mask	Implementations of ChannelProvider that involve conversion from or application of Masks.
org.anchoranalysis.plugin.image.bean.channel.provider.object	Implementations of ChannelProvider that involve conversion from or application of ObjectMasks.
org.anchoranalysis.plugin.image.bean.channel.provider.score	Implementations of ChannelProvider that assign a score to particular subregions of a channel.
org.anchoranalysis.plugin.image.bean.channel.provider.slice	Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.imagej.bean.channel.provider	Implementations of ChannelProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter	Filters using ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments	Non-linear filters using ImageJ that use the statistical moments of the intensity values in the kernel.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank	Non-linear filters using ImageJ that use the statistical rank of the intensity values in the kernel.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.fiji.bean.channel.provider

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.fiji.bean.channel.provider

Modifier and Type	Class	Description
class	AnisotropicDiffusion	Performs Perona-Malik Anisotropic Diffusion.
class	MinimumFilter	Applies a minimum filter to a channel using ImageJ's MinMaxMedian plugin.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider

Modifier and Type	Class	Description
class	Duplicate	Creates a duplicate of the input channel.
class	IfParamEquals	Provides a channel based on a condition from a dictionary.
class	UnaryWithObjectsBase	An abstract base class for creating a channel from an existing channel and a collection of objects.
class	UnaryWithValueBase	A ChannelProviderUnary which has a scalar value field.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic

Modifier and Type	Class	Description
final class	AddConstant	Adds a constant value to each voxel in a channel.
class	ArithmeticWithConstantBase	Base-class for operations that perform a binary arithmetic operation with each voxel-value and a constant.
class	ArithmeticWithConstantConditionallyWriteBase	Base class for arithmetic operations that conditionally overwrite voxel values with a constant.
class	Invert	Inverts the intensity values of a Channel by subtracting each voxel from the maximum value for the channel's data type.
class	MaxWithConstant	Replaces voxel values with a constant value if the constant is greater than the original voxel value.
class	MinWithConstant	Replaces voxel values with a constant value if the constant is less than the original voxel value.
class	MultiplyConstant	Multiplies each voxel value in a channel by a constant value.
class	SubtractFromConstant	Subtracts each voxel value in a channel from a constant value.
class	SubtractMean	Subtracts the mean intensity (of the entire channel or a masked portion thereof) from every voxel.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.assign

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.assign

Modifier and Type	Class	Description
class	AssignFromChannel	Copies the pixels from channelAssignFrom to channel (possibly masking).
class	AssignFromDictionary	Assigns a value from a dictionary to all voxels in a channel.
class	AssignFromIntersectingObjects	Matches source-objects to target objects, based upon intersection, and assigns the value in the respective source object to the target object
class	AssignValue	Assigns a constant (scalar) value to the portion of the image covered by a mask

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.convert

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.convert

Modifier and Type	Class	Description
class	Convert<T>	Converts a channel by applying a converter (no histogram is involved in the conversion).
class	ConvertBase	Base class for channel providers that perform conversions on a single input channel.
class	ConvertWithHistogram<T>	Converts a channel to a different voxel data-type by applying a converter with an associated histogram.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.gradient

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.gradient

Modifier and Type	Class	Description
class	GradientBase	Base class to calculate the gradient of the voxels in a Channel.
class	GradientBaseAddSum	Like GradientBase but allows an arbitrary constant to be added to voxels storing the gradient.
class	GradientForAxis	Extracts the gradient in the direction of a particular axis (identified by an index)
class	GradientXY	Calculates a Channel's gradient along the x and y axes.
class	Sobel	3x3 Sobel Filter

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.intensity

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.intensity

Modifier and Type	Class	Description
class	Blur	Blurs an image using a particular strategy (defaults to a gaussian blur in each slice)
class	IfVoxelZero	Creates a new channel which is a merged version of two input channels according to rules.
class	Median	Applies a median-filter with square kernel
class	NormalizeDifferenceToMedian	Corrects a channel in the following way
class	NormalizeObjectIntensity	Rewrites the intensity for each object-mask (assume no overlap) so that its mean is 128
class	QuantileStretch	Changes the voxel values to map the range of 0th quantile to xth quantile across the entire voxel data range
class	ScaleXY	Scales the channel in the X and Y dimensions.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.mask

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.mask

Modifier and Type	Class	Description
class	UnaryWithMaskBase	A base class for a ChannelProviderUnary which also uses a binary mask.
class	ZeroOutsideMask	Set pixels NOT IN the mask to 0, but keep pixels IN the mask identical.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.object

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.object

Modifier and Type	Class	Description
class	LevelPerObjectBase	Creates a channel with a level calculated for each object using various methods.
class	LevelPerObjectIndependently	Creates a channel with different threshold-levels for each object, calculating the level only from the histogram of the particular object.
class	LevelPerObjectNeighbors	Calculates a threshold-level for each object collectively based on other objects

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.score

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.score

Modifier and Type	Class	Description
class	IdentifyObjects	Assigns a unique id number to each object.
class	ScoreObjects	Creates a channel by scoring objects based on a feature calculation.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Modifier and Type	Class	Description
class	ExtractCenterSlice	Extracts the slice at the center (rounding down) of the range of z-stacks.
class	ExtractSliceRange	Extracts slices from sliceStart (inclusive) to sliceEnd (inclusive).
class	MaximumIntensityProjection	Creates a maximum intensity projection of a 3D Channel.
class	MeanIntensityProjection	Creates a mean intensity projection of a 3D Channel.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider

Modifier and Type	Class	Description
class	BackgroundSubtractor	Subtracts background from a channel using ImageJ's BackgroundSubtracter.
class	WithFilterBase	A base class for applying ImageJ rank filters to channels.
class	WithRadiusBase	A ChannelProviderUnary with a 'radius' parameter.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter

Modifier and Type	Class	Description
class	EdgeFilterIJ	Applies an edge detection filter to each slice of a Channel independently using ImageJ's FIND_EDGES filter.
class	GaussianBlur2D	Applies a 2D Gaussian blur filter to each slice of a Channel independently.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.moments

Modifier and Type	Class	Description
class	MeanFilter2D	Applies a 2D mean filter to a channel using ImageJ's RankFilters.
class	VarianceFilter2D	Applies a 2D variance filter to a channel using ImageJ's RankFilters.

Uses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank

Subclasses of ChannelProviderUnary in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank

Modifier and Type	Class	Description
class	MedianFilter2D	Applies a 2D median filter to a channel using ImageJ's RankFilters.
class	MedianFilter3D	Applies a 3D median filter to a channel using a hybrid 3D median filter ImageJ plugin.