Package | Description |
---|---|
org.anchoranalysis.image.io.bean.channel |
Beans pertaining to reading
Channel s as input. |
org.anchoranalysis.image.io.bean.stack.reader |
Bean classes for reading raster-files from the filesystem.
|
org.anchoranalysis.image.io.channel.map |
Non-bean classes for a mapping of names to
Channel s. |
org.anchoranalysis.io.bioformats.bean |
Beans for filesystem I/O using Bioformats.
|
org.anchoranalysis.plugin.io.bean.channel.map |
Implementations of
ChannelMapCreator . |
org.anchoranalysis.plugin.io.bean.stack.reader |
Implementations of
StackReader . |
org.anchoranalysis.plugin.io.multifile |
Non-bean classes to help use multiple files to represent a single
Stack . |
org.anchoranalysis.plugin.opencv.bean.stack |
Modifier and Type | Method and Description |
---|---|
abstract ChannelMap |
ChannelMapCreator.create(OpenedImageFile openedFile,
Logger logger)
Creates the
ChannelMap . |
Modifier and Type | Method and Description |
---|---|
abstract OpenedImageFile |
StackReaderOrientationCorrection.openFile(Path path,
CalculateOrientationChange orientationCorrection,
ExecutionTimeRecorder executionTimeRecorder)
Opens a file containing one or more images but does not read an image.
|
abstract OpenedImageFile |
StackReader.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder)
Opens a file containing one or more images.
|
Constructor and Description |
---|
OpenedNamedChannels(OpenedImageFile openedFile,
ChannelMap channelMap,
int seriesIndex) |
Modifier and Type | Method and Description |
---|---|
OpenedImageFile |
BioformatsReader.openFile(Path filePath,
CalculateOrientationChange orientationCorrection,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
BioformatsReader.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
Modifier and Type | Method and Description |
---|---|
ChannelMap |
Autoname.create(OpenedImageFile openedFile,
Logger logger) |
ChannelMap |
FromEntries.create(OpenedImageFile openedFile,
Logger logger) |
ChannelMap |
FromMetadata.create(OpenedImageFile openedFile,
Logger logger) |
ChannelMap |
SingleChannel.create(OpenedImageFile openedFile,
Logger logger) |
Modifier and Type | Method and Description |
---|---|
OpenedImageFile |
RotateImageToMatchEXIFOrientation.openFile(Path path,
CalculateOrientationChange orientationCorrection,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
BranchExtension.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
FlattenAsChannel.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
RejectIfConditionXYResolution.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
ImposeResolution.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
RotateImageToMatchEXIFOrientation.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
MultiFileReader.openFile(Path filePath,
ExecutionTimeRecorder executionTimeRecorder) |
OpenedImageFile |
ReadVoxelExtentXml.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
Modifier and Type | Class and Description |
---|---|
class |
OpenedMultiFile
A
OpenedImageFile where the image is formed from more than one file on the file-system. |
Modifier and Type | Method and Description |
---|---|
OpenedImageFile |
OpenCVReader.openFile(Path path,
ExecutionTimeRecorder executionTimeRecorder) |
Copyright © 2010–2023 Owen Feehan, ETH Zurich, University of Zurich, Hoffmann-La Roche. All rights reserved.