Uses of Interface
org.anchoranalysis.image.io.stack.input.OpenedImageFile

Packages that use OpenedImageFile

Package	Description
org.anchoranalysis.image.io.bean.channel	Beans pertaining to reading Channels as input.
org.anchoranalysis.image.io.bean.stack.reader	Bean classes for reading raster-files from the filesystem.
org.anchoranalysis.image.io.channel.map	Non-bean classes for a mapping of names to Channels.
org.anchoranalysis.io.bioformats.bean	Beans for filesystem I/O using Bioformats.
org.anchoranalysis.plugin.io.bean.channel.map	Implementations of ChannelMapCreator.
org.anchoranalysis.plugin.io.bean.stack.reader	Implementations of StackReader.
org.anchoranalysis.plugin.io.multifile	Non-bean classes to help use multiple files to represent a single Stack.
org.anchoranalysis.plugin.opencv.bean.stack	Implementations of StackWriter and StackReader that involve OpenCV.

Uses of OpenedImageFile in org.anchoranalysis.image.io.bean.channel

Methods in org.anchoranalysis.image.io.bean.channel with parameters of type OpenedImageFile

Modifier and Type	Method	Description
abstract ChannelMap	ChannelMapCreator.create(OpenedImageFile openedFile, Logger logger)	Creates the ChannelMap.

Uses of OpenedImageFile in org.anchoranalysis.image.io.bean.stack.reader

Methods in org.anchoranalysis.image.io.bean.stack.reader that return OpenedImageFile

Modifier and Type	Method	Description
abstract OpenedImageFile	StackReader.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)	Opens a file containing one or more images.
abstract OpenedImageFile	StackReaderOrientationCorrection.openFile(Path path, CalculateOrientationChange orientationCorrection, ExecutionTimeRecorder executionTimeRecorder)	Opens a file containing one or more images but does not read an image.

Uses of OpenedImageFile in org.anchoranalysis.image.io.channel.map

Constructors in org.anchoranalysis.image.io.channel.map with parameters of type OpenedImageFile

Modifier	Constructor	Description
	OpenedNamedChannels(OpenedImageFile openedFile, ChannelMap channelMap, int seriesIndex)	Creates a new OpenedNamedChannels instance.

Uses of OpenedImageFile in org.anchoranalysis.io.bioformats.bean

Methods in org.anchoranalysis.io.bioformats.bean that return OpenedImageFile

Modifier and Type	Method	Description
OpenedImageFile	BioformatsReader.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	BioformatsReader.openFile(Path filePath, CalculateOrientationChange orientationCorrection, ExecutionTimeRecorder executionTimeRecorder)

Uses of OpenedImageFile in org.anchoranalysis.plugin.io.bean.channel.map

Methods in org.anchoranalysis.plugin.io.bean.channel.map with parameters of type OpenedImageFile

Modifier and Type	Method	Description
ChannelMap	Autoname.create(OpenedImageFile openedFile, Logger logger)
ChannelMap	FromEntries.create(OpenedImageFile openedFile, Logger logger)
ChannelMap	FromMetadata.create(OpenedImageFile openedFile, Logger logger)
ChannelMap	SingleChannel.create(OpenedImageFile openedFile, Logger logger)

Uses of OpenedImageFile in org.anchoranalysis.plugin.io.bean.stack.reader

Methods in org.anchoranalysis.plugin.io.bean.stack.reader that return OpenedImageFile

Modifier and Type	Method	Description
OpenedImageFile	BranchExtension.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	FlattenAsChannel.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	ImposeResolution.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	MultiFileReader.openFile(Path filePath, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	ReadVoxelExtentXml.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	RejectIfConditionXYResolution.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	RotateImageToMatchEXIFOrientation.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)
OpenedImageFile	RotateImageToMatchEXIFOrientation.openFile(Path path, CalculateOrientationChange orientationCorrection, ExecutionTimeRecorder executionTimeRecorder)

Uses of OpenedImageFile in org.anchoranalysis.plugin.io.multifile

Classes in org.anchoranalysis.plugin.io.multifile that implement OpenedImageFile

Modifier and Type	Class	Description
class	OpenedMultiFile	A OpenedImageFile where the image is formed from more than one file on the file-system.

Uses of OpenedImageFile in org.anchoranalysis.plugin.opencv.bean.stack

Methods in org.anchoranalysis.plugin.opencv.bean.stack that return OpenedImageFile

Modifier and Type	Method	Description
OpenedImageFile	OpenCVReader.openFile(Path path, ExecutionTimeRecorder executionTimeRecorder)