Source Repository - anchor-plugins | Anchor Image Analysis

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Introduction

A Java (Maven) source repository on GitHub containing the main plugins for Anchor. This includes most of the image processing algorithms.

What belongs?

Tip: It should include: algorithms, beans, data-classes and any other implementations of abstract classes in the anchor repository, so long as they are compatible with the MIT license.

Warning: It should not include: GPL-licensed code, pipeline BeanXML, entry-point applications.

Supporting libraries and tooling

A SonarCloud project performs static code analysis.
Project Lombok reduces boiler-plate source code. Please see key libraries for relevant libraries and tooling.
Coding style specifies the applicable style-guide.
GitHub Actions and Maven for CI/CD.

Modules

Module	Java Package Root & Description	Classes	Lines‑of‑Code
anchor-plugin-annotation	`org.anchoranalysis.plugin.annotation` Annotating images.	36	1,989
anchor-plugin-image	`org.anchoranalysis.plugin.image` Image-related options.	312	13,785
anchor-plugin-imagej	`org.anchoranalysis.plugin.imagej` Operations that use ImageJ.	33	1,987
anchor-plugin-image-feature	`org.anchoranalysis.plugin.image.feature` Feature-extraction from images.	183	6,590
anchor-plugin-image-task	`org.anchoranalysis.plugin.image.task` Tasks related to images.	55	3,273
anchor-plugin-io	`org.anchoranalysis.plugin.io` Input-output operations.	144	6,665
anchor-plugin-mpp	`org.anchoranalysis.plugin.mpp` Operations related to marked-point-processes.	113	6,142
anchor-plugin-mpp-experiment	`org.anchoranalysis.plugin.mpp.experiment` Experiments related to marked-point-processes.	35	2,641
anchor-plugin-mpp-feature	`org.anchoranalysis.plugin.mpp.feature` Feature-extraction with marked-point-processes.	78	2,875
anchor-plugin-mpp-segment	`org.anchoranalysis.plugin.mpp.segment` Segmentation involving marked-point-processes.	95	5,056
anchor-plugin-onnx	`org.anchoranalysis.plugin.onnx` Operations that call the ONNX Runtime.	5	652
anchor-plugin-opencv	`org.anchoranalysis.plugin.opencv` Operations that call OpenCV.	24	1,309
anchor-plugin-operator-feature	`org.anchoranalysis.plugin.operator.feature` Generic features working on varying input-types.	35	1,004
anchor-plugin-points	`org.anchoranalysis.plugin.points` Points-fitting and other geometric operations.	33	2,036
anchor-plugin-quick	`org.anchoranalysis.plugin.quick` Quickly specifying experiments.	28	2,087
anchor-test-experiment	`org.anchoranalysis.test.experiment` Test utilities depending on anchor-experiment.	4	317
anchor-test-feature-plugins	`org.anchoranalysis.test.feature` Helper routines for testing features.	13	494
anchor-test-mpp	`org.anchoranalysis.` Tests for other packages involving image IO.	-	68

Number of classes/code is as per SonarQube, June 24th, 2020. Lines-of-code excludes whitespace and comments.