What belongs in the repository?
Tip: It should include: R functions for processing data produced by Anchor, or data to form an input to Anchor.
Warning: It should not include: R scripts (only R functions in packages belong here!)
|anchor-r||General utility functions for interacting with Anchor output.|
|anchor-r-features||Processing feature-export data (CSV) from Anchor (building classifiers, plotting etc.)|
|anchor-r-experiment||Class for accessing the structured output from an Anchor experiment.|
|anchor-r-nuclei||Functions to help with nuclei segmentation pipelines.|
- Each function is documented in its header (in the respective
NAMESPACEfile specifies which functions are publicly-exposed.
- R-package dependencies are listed in the
DESCRIPTIONfile and in
Warning: The packages are not on CRAN and thus cannot be imported through the usual R functions.
Before using these functions in a script elsewhere, a package must be installed locally, either:
- Use RStudio, open each project, and select the Build & Reload button in the Build panel in the top-right, or
- Use the make script (
make.sh) in the packages’s top-level folder (after first adding your R executable to the system path).