Uses of Class
org.anchoranalysis.bean.xml.exception.ProvisionFailedException

Packages that use ProvisionFailedException

Package	Description
org.anchoranalysis.bean	Defining, loading, initializing Anchor Beans.
org.anchoranalysis.feature.bean.list	A feature-list (custom list type for features) and associated providers.
org.anchoranalysis.feature.bean.provider	Provider of a single feature.
org.anchoranalysis.feature.store	A collection of named-Features.
org.anchoranalysis.image.bean.provider	Base classes for providers of different core data entities related to images.
org.anchoranalysis.image.bean.provider.stack	A provider of Stacks.
org.anchoranalysis.image.core.stack	Defines the key data object, Stack, and related classes.
org.anchoranalysis.image.io.bean.stack.combine	Beans to combine multiple stacks into a single stack before outputting.
org.anchoranalysis.io.input.bean.dictionary	Methods to provide a Dictionary.
org.anchoranalysis.io.input.bean.path.provider	Methods to provide a single file-path.
org.anchoranalysis.plugin.fiji.bean.channel.provider	Implementations of ChannelProvider that use FIJI.
org.anchoranalysis.plugin.fiji.bean.channel.provider.distance	Euclidean Distance Transform implementations via FIJI.
org.anchoranalysis.plugin.image.bean.channel.provider	Implementations of ChannelProvider that are generic base-classes or otherwise abstract or general.
org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic	Implementations of ChannelProvider that perform arithmetic on voxels in one or more Channels.
org.anchoranalysis.plugin.image.bean.channel.provider.assign	Implementations of ChannelProvider that sets the values of the voxels in a Channel.
org.anchoranalysis.plugin.image.bean.channel.provider.convert	Implementations of ChannelProvider that converts a Channel from one voxel-type to another.
org.anchoranalysis.plugin.image.bean.channel.provider.gradient	Implementations of ChannelProvider that calculate the gradient of a Channel's voxels in one or more dimensions.
org.anchoranalysis.plugin.image.bean.channel.provider.intensity	Implementations of ChannelProvider that manipulate the intensity-values of the voxels of a Channel's voxels.
org.anchoranalysis.plugin.image.bean.channel.provider.mask	Implementations of ChannelProvider that involve conversion from or application of Masks.
org.anchoranalysis.plugin.image.bean.channel.provider.object	Implementations of ChannelProvider that involve conversion from or application of ObjectMasks.
org.anchoranalysis.plugin.image.bean.channel.provider.score	Implementations of ChannelProvider that assign a score to particular subregions of a channel.
org.anchoranalysis.plugin.image.bean.channel.provider.slice	Implementations of ChannelProvider that process 3D channels slice-by-slice.
org.anchoranalysis.plugin.image.bean.color.provider	Implementations of ColorProvider.
org.anchoranalysis.plugin.image.bean.dictionary	Beans pertaining to Dictionary.
org.anchoranalysis.plugin.image.bean.dimensions.provider	Implementations of DimensionsProvider.
org.anchoranalysis.plugin.image.bean.histogram.provider	Implementations of HistogramProvider.
org.anchoranalysis.plugin.image.bean.mask.provider	Implementations of MaskProvider.
org.anchoranalysis.plugin.image.bean.mask.provider.combine	Implementations of MaskProvider that combine existing providers.
org.anchoranalysis.plugin.image.bean.mask.provider.convert	Implementations of MaskProvider that convert providers of other types to ObjectMasks.
org.anchoranalysis.plugin.image.bean.mask.provider.morphological	Implementations of MaskProvider that implement morphological operations.
org.anchoranalysis.plugin.image.bean.mask.provider.predicate	Provides if-else conditions to a MaskProvider.
org.anchoranalysis.plugin.image.bean.mask.provider.slice	Implementations of MaskProvider that process 3D masks slice-by-slice.
org.anchoranalysis.plugin.image.bean.object.provider	Implementations of ObjectCollectionProvider.
org.anchoranalysis.plugin.image.bean.object.provider.connected	Implementations of ObjectCollectionProvider involving connected-components.
org.anchoranalysis.plugin.image.bean.object.provider.feature	Implementations of ObjectCollectionProvider involving feature calculation.
org.anchoranalysis.plugin.image.bean.object.provider.filter	Implementations of ObjectCollectionProvider that filter objects.
org.anchoranalysis.plugin.image.bean.object.provider.mask	Implementations of ObjectCollectionProvider involving a Mask.
org.anchoranalysis.plugin.image.bean.object.provider.merge	Implementations of ObjectCollectionProvider involving merging objects together.
org.anchoranalysis.plugin.image.bean.object.provider.morphological	Implementations of ObjectCollectionProvider involving morphological operations.
org.anchoranalysis.plugin.image.bean.object.provider.segment	Implementations of ObjectCollectionProvider involving segmentation.
org.anchoranalysis.plugin.image.bean.object.provider.slice	Implementations of ObjectCollectionProvider involving z-slice processing.
org.anchoranalysis.plugin.image.bean.object.provider.split	Implementations of ObjectCollectionProvider involving splitting objects into smaller objects.
org.anchoranalysis.plugin.image.bean.stack.provider	Implementations of StackProvider.
org.anchoranalysis.plugin.image.bean.stack.provider.color	Implementations of StackProvider that color portions of an image.
org.anchoranalysis.plugin.image.channel	Non-beans for operations or calculations relating to Channels.
org.anchoranalysis.plugin.image.feature.bean.list	Implementations of FeatureListProvider.
org.anchoranalysis.plugin.image.feature.bean.list.pair	Implementations of FeatureListProvider with input-type FeatureInputPairObjects.
org.anchoranalysis.plugin.image.feature.bean.list.permute	Implementations of FeatureListProvider that derive new features with permuted property-values.
org.anchoranalysis.plugin.imagej.bean.channel.provider	Implementations of ChannelProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter	Filters using ImageJ.
org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank	Non-linear filters using ImageJ that use the statistical rank of the intensity values in the kernel.
org.anchoranalysis.plugin.imagej.bean.mask.provider	Implementations of MaskProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.object.provider	Implementations of ObjectCollectionProvider that call ImageJ.
org.anchoranalysis.plugin.imagej.bean.stack.provider	Implementations of StackProvider that call ImageJ.
org.anchoranalysis.plugin.mpp.bean.object.provider	Implementations of ObjectCollectionProvider.
org.anchoranalysis.plugin.mpp.bean.provider.collection	Implementation of MarkCollectionProvider.
org.anchoranalysis.plugin.opencv.bean.color	Operations involving color-spaces and OpenCV.
org.anchoranalysis.plugin.opencv.bean.feature	Extracting features using OpenCV.
org.anchoranalysis.plugin.points.bean	Beans that fit or otherwise manipulate sets of points.
org.anchoranalysis.plugin.points.bean.convexhull	Convex hull operations.
org.anchoranalysis.plugin.points.bean.fitter	Fitting geometric structures to points.

Uses of ProvisionFailedException in org.anchoranalysis.bean

Methods in org.anchoranalysis.bean that throw ProvisionFailedException

Modifier and Type	Method	Description
static <T> Optional<T>	OptionalProviderFactory.create(Provider<T> provider)	Creates from a provider if non-null.
T	Provider.get()	Gets or creates an object of type T.

Uses of ProvisionFailedException in org.anchoranalysis.feature.bean.list

Methods in org.anchoranalysis.feature.bean.list that throw ProvisionFailedException

Modifier and Type	Method	Description
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromProvider(Provider<Feature<T>> featureProvider)	Creates a list for a single-feature created from a provider
static <T extends FeatureInput> FeatureList<T>	FeatureListFactory.fromProviders(Collection<FeatureProvider<T>> providers)	Creates a list of features from a collection of feature-providers
FeatureList<T>	DefinedNamed.get()
FeatureList<FeatureInput>	PrependName.get()

Uses of ProvisionFailedException in org.anchoranalysis.feature.bean.provider

Methods in org.anchoranalysis.feature.bean.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Feature<FeatureInput>	FeatureProviderReference.get()

Uses of ProvisionFailedException in org.anchoranalysis.feature.store

Methods in org.anchoranalysis.feature.store that throw ProvisionFailedException

Modifier and Type	Method	Description
<T extends FeatureInput> NamedFeatureStore<T>	NamedFeatureStoreFactory.createNamedFeatureList(List<NamedBean<FeatureListProvider<T>>> namedFeatures)	Create a NamedFeatureStore from a list of beans.

Uses of ProvisionFailedException in org.anchoranalysis.image.bean.provider

Methods in org.anchoranalysis.image.bean.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
protected abstract Channel	ChannelProviderUnary.createFromChannel(Channel channel)	Creates a Channel given the entity provided by the delegate.
protected abstract Histogram	HistogramProviderUnary.createFromHistogram(Histogram histogram)	Creates a Histogram given the entity provided by the delegate.
protected abstract Mask	MaskProviderUnary.createFromMask(Mask mask)	Creates a Mask given the entity provided by the delegate.
protected abstract ObjectCollection	ObjectCollectionProviderUnary.createFromObjects(ObjectCollection objects)	Creates a ObjectCollection given the entity provided by the delegate.
Channel	ChannelProviderBinary.get()
Channel	ChannelProviderTernary.get()
Channel	ChannelProviderUnary.get()
Histogram	HistogramProviderUnary.get()
Mask	MaskProviderUnary.get()
ObjectCollection	ObjectCollectionProviderUnary.get()
Stack	ChannelProvider.getAsStack()
Stack	MaskProvider.getAsStack()
protected abstract Channel	ChannelProviderBinary.process(Channel channel1, Channel channel2)	Creates a Channel given the two entities provided by the delegates.
protected abstract Channel	ChannelProviderTernary.process(Channel channel1, Channel channel2, Channel channel3)	Creates a Channel given the two entities provided by the delegates.

Uses of ProvisionFailedException in org.anchoranalysis.image.bean.provider.stack

Methods in org.anchoranalysis.image.bean.provider.stack that throw ProvisionFailedException

Modifier and Type	Method	Description
protected abstract Stack	StackProviderUnary.createFromStack(Stack stack)	Creates a Stack given the entity provided by the delegate.
Stack	Arrange.get()
Stack	StackProviderUnary.get()
Stack	StackProvider.getAsStack()

Uses of ProvisionFailedException in org.anchoranalysis.image.core.stack

Methods in org.anchoranalysis.image.core.stack that throw ProvisionFailedException

Modifier and Type	Method	Description
Stack	ProviderAsStack.getAsStack()	Retrieves or creates a Stack representation of an entity.

Uses of ProvisionFailedException in org.anchoranalysis.image.io.bean.stack.combine

Methods in org.anchoranalysis.image.io.bean.stack.combine that throw ProvisionFailedException

Modifier and Type	Method	Description
Stack	TileWithLabels.get()
Stack	WriteText.get()

Uses of ProvisionFailedException in org.anchoranalysis.io.input.bean.dictionary

Methods in org.anchoranalysis.io.input.bean.dictionary that throw ProvisionFailedException

Modifier and Type	Method	Description
Dictionary	ReadFromFile.get()

Uses of ProvisionFailedException in org.anchoranalysis.io.input.bean.path.provider

Methods in org.anchoranalysis.io.input.bean.path.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Path	FilePathProviderReference.get()
Path	FromFiles.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.fiji.bean.channel.provider

Methods in org.anchoranalysis.plugin.fiji.bean.channel.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	AnisotropicDiffusion.createFromChannel(Channel channel)
Channel	MinimumFilter.createFromChannel(Channel channel)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance

Methods in org.anchoranalysis.plugin.fiji.bean.channel.provider.distance that throw ProvisionFailedException

Modifier and Type	Method	Description
Voxels<UnsignedByteBuffer>	DistanceTransform3D.createDistanceMapForVoxels(BinaryVoxels<UnsignedByteBuffer> voxels, Optional<Resolution> resolution, float multiplyByZRes)	Creates a distance map for binary voxels.
protected Channel	DistanceTransformForEachObject3D.createFromDimensions(Dimensions dimensions)
protected Channel	DistanceTransform3D.createFromMask(Mask mask)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider

Methods in org.anchoranalysis.plugin.image.bean.channel.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	IfParamEquals.createFromChannel(Channel channel)
Channel	UnaryWithObjectsBase.createFromChannel(Channel channel)
protected abstract Channel	UnaryWithObjectsBase.createFromChannel(Channel channel, ObjectCollection objects)	Creates a new channel from an existing channel and a collection of objects.
Channel	UnaryWithValueBase.createFromChannel(Channel channel)
protected abstract Channel	UnaryWithValueBase.createFromChannelWithConstant(Channel channel, double value)	Creates a new channel from an existing channel and a scalar value.
protected abstract Channel	FromDimensionsBase.createFromDimensions(Dimensions dimensions)	Creates a channel from the given dimensions.
Channel	FromDimensionsBase.get()
Channel	FromStack.get()
Channel	Reference.get()
protected Channel	TwoVoxelMappingBase.process(Channel channel1, Channel channel2)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.arithmetic that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	ArithmeticWithConstantBase.createFromChannelWithConstant(Channel channel, double value)
Channel	ArithmeticWithConstantConditionallyWriteBase.createFromChannelWithConstant(Channel channel, double value)
protected Channel	MeanThreeChannels.process(Channel channel1, Channel channel2, Channel channel3)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.assign

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.assign that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	AssignFromDictionary.createFromChannel(Channel channel)
Channel	AssignFromIntersectingObjects.createFromChannel(Channel channel)
protected Channel	AssignFromChannel.createFromMaskedChannel(Channel channel, Mask mask)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.convert

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.convert that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	Convert.createFromChannel(Channel channel)
Channel	ConvertWithHistogram.createFromChannel(Channel channel)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.gradient

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.gradient that throw ProvisionFailedException

Modifier and Type	Method	Description
protected abstract boolean[]	GradientBaseAddSum.createAxisArray()	Creates an array of booleans indicating which axes to calculate the gradient for.
protected boolean[]	GradientForAxis.createAxisArray()
Channel	GradientBaseAddSum.createFromChannel(Channel channelIn)
Channel	Sobel.createFromChannel(Channel channelIn)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.intensity

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.intensity that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	Blur.createFromChannel(Channel channel)
Channel	IfVoxelZero.createFromChannel(Channel channel)
Channel	Median.createFromChannel(Channel channel)
protected Channel	NormalizeDifferenceToMedian.createFromChannel(Channel channel, ObjectCollection objects)
protected Channel	NormalizeObjectIntensity.createFromChannel(Channel channel, ObjectCollection objects)
Channel	QuantileStretch.createFromChannel(Channel channel)
Channel	ScaleXY.createFromChannel(Channel channel)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.mask

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.mask that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	UnaryWithMaskBase.createFromChannel(Channel channel)
protected abstract Channel	FromMaskBase.createFromMask(Mask mask)	Creates a Channel from the provided Mask.
protected abstract Channel	UnaryWithMaskBase.createFromMaskedChannel(Channel channel, Mask mask)	Creates a new Channel from the input channel and mask.
Channel	FromMaskBase.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.object

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.object that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	LevelPerObjectBase.createFromChannel(Channel channel)
protected abstract void	LevelPerObjectBase.writeLevelsForObjects(Channel input, ObjectCollection objects, Channel output)	Creates a channel with the levels for a set of objects.
protected void	LevelPerObjectIndependently.writeLevelsForObjects(Channel channelIntensity, ObjectCollection objects, Channel output)
protected void	LevelPerObjectNeighbors.writeLevelsForObjects(Channel channelIntensity, ObjectCollection objects, Channel output)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.score

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.score that throw ProvisionFailedException

Modifier and Type	Method	Description
protected Channel	IdentifyObjects.createFromChannel(Channel channel, ObjectCollection objects)
protected Channel	ScoreObjects.createFromChannel(Channel channel, ObjectCollection objects)
Channel	ScoreVoxels.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.channel.provider.slice

Methods in org.anchoranalysis.plugin.image.bean.channel.provider.slice that throw ProvisionFailedException

Modifier and Type	Method	Description
protected Channel	RepeatSlice.createFromDimensions(Dimensions dimensions)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.color.provider

Methods in org.anchoranalysis.plugin.image.bean.color.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
ColorList	Concatenate.get()
ColorList	GenerateToMatchObjects.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.dictionary

Methods in org.anchoranalysis.plugin.image.bean.dictionary that throw ProvisionFailedException

Modifier and Type	Method	Description
boolean	DictionaryCondition.isConditionTrue()	Checks if the condition is true by comparing the value in the dictionary with the expected value.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.dimensions.provider

Methods in org.anchoranalysis.plugin.image.bean.dimensions.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Dimensions	FromChannel.get()
Dimensions	GuessDimensions.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.histogram.provider

Methods in org.anchoranalysis.plugin.image.bean.histogram.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Histogram	GreaterThanThreshold.createFromHistogram(Histogram histogram)
Histogram	FromChannel.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.mask.provider

Methods in org.anchoranalysis.plugin.image.bean.mask.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
protected abstract Mask	FromDimensionsBase.createFromDimensions(Dimensions dimensions)	Creates a Mask from the given Dimensions.
Mask	Invert.createFromMask(Mask maskToInvert)
Mask	ScaleXY.createFromMask(Mask mask)
Mask	FromChannelBase.get()
Mask	FromDimensionsBase.get()
Mask	Reference.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.mask.provider.combine

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.combine that throw ProvisionFailedException

Modifier and Type	Method	Description
Mask	CombineBase.createFromMask(Mask mask)
protected abstract Mask	CombineBase.createFromTwoMasks(Mask maskToModify, Mask maskOther)	Creates a mask from some combination of two masks.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.mask.provider.convert

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.convert that throw ProvisionFailedException

Modifier and Type	Method	Description
protected Mask	FromObjects.createFromDimensions(Dimensions dimensions)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.mask.provider.morphological

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.morphological that throw ProvisionFailedException

Modifier and Type	Method	Description
protected void	Erode.applyMorphologicalOperation(Mask source, boolean do3D)
protected abstract void	MorphologicalOperatorBase.applyMorphologicalOperation(Mask source, boolean do3D)	Applies the morphological operation to the source mask.
Mask	ExteriorContour.createFromMask(Mask mask)
Mask	FitBoxToOnVoxels.createFromMask(Mask mask)
Mask	MorphologicalOperatorBase.createFromMask(Mask mask)
protected Optional<Predicate<Point3i>>	MorphologicalOperatorBase.precondition()	Creates a precondition for the morphological operation based on intensity values.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.mask.provider.predicate

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.predicate that throw ProvisionFailedException

Modifier and Type	Method	Description
protected Mask	IfPredicateBase.createFromMask(Mask mask)
protected boolean	IfKeyValueCondition.predicate(Mask mask)
protected boolean	IfObjectFilter.predicate(Mask mask)
protected abstract boolean	IfPredicateBase.predicate(Mask mask)	Evaluates a predicate condition on the input mask.
protected boolean	IfStackExists.predicate(Mask mask)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.mask.provider.slice

Methods in org.anchoranalysis.plugin.image.bean.mask.provider.slice that throw ProvisionFailedException

Modifier and Type	Method	Description
Mask	RepeatSlice.createFromMask(Mask mask)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider

Methods in org.anchoranalysis.plugin.image.bean.object.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
protected Optional<ObjectCollection>	WithContainerBase.containerOptional()	Retrieves the optional container of objects.
protected ObjectCollection	WithContainerBase.containerRequired()	Retrieves the required container of objects.
protected Dimensions	WithDimensionsBase.createDimensions()	Creates the dimensions using the specified DimensionsProvider.
protected Optional<Dimensions>	WithOptionalDimensionsBase.createDims()	Creates the dimensions if a DimensionsProvider is specified.
protected abstract ObjectCollection	WithChannelBase.createFromChannel(Channel channelSrc)	Creates an ObjectCollection from a source Channel.
ObjectCollection	AtIndex.createFromObjects(ObjectCollection objects)
ObjectCollection	Scale.createFromObjects(ObjectCollection objects)
ObjectCollection	UnaryWithChannelBase.createFromObjects(ObjectCollection objectsSource)
protected abstract ObjectCollection	UnaryWithChannelBase.createFromObjects(ObjectCollection objectsSource, Channel channelSource)	Creates objects from a source collection and a channel.
ObjectCollection	Concatenate.get()
ObjectCollection	Empty.get()
ObjectCollection	IfParamEqual.get()
ObjectCollection	Permute.get()
ObjectCollection	Reference.get()
ObjectCollection	ReferenceOrElse.get()
ObjectCollection	WithChannelBase.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.connected

Methods in org.anchoranalysis.plugin.image.bean.object.provider.connected that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	DecomposeIntoConnectedComponents.createFromObjects(ObjectCollection objects)
ObjectCollection	RejectIfNotConnected.createFromObjects(ObjectCollection objects)
ObjectCollection	ConnectedComponentsFromMask.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.feature

Methods in org.anchoranalysis.plugin.image.bean.object.provider.feature that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	ObjectWithMaximumFeature.createFromObjects(ObjectCollection objects)
ObjectCollection	ObjectWithMaximumFeatureFromEachMatchedCollection.createFromObjects(ObjectCollection objects)
ObjectCollection	SortByFeature.createFromObjects(ObjectCollection objects)
protected FeatureCalculatorSingle<FeatureInputSingleObject>	ObjectCollectionProviderWithFeature.createSession()	Creates a feature calculation session for single objects.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.filter

Methods in org.anchoranalysis.plugin.image.bean.object.provider.filter that throw ProvisionFailedException

Modifier and Type	Method	Description
protected ObjectCollection	Filter.createFromObjects(ObjectCollection objects, Optional<List<ObjectMask>> objectsRejected, Optional<Dimensions> dim)
protected ObjectCollection	FilterByGroup.createFromObjects(ObjectCollection objects, Optional<List<ObjectMask>> objectsRejected, Optional<Dimensions> dim)
ObjectCollection	IntersectsWithContainer.createFromObjects(ObjectCollection objects)
ObjectCollection	Match.createFromObjects(ObjectCollection objects)
ObjectCollection	NotInContainer.createFromObjects(ObjectCollection objects)
ObjectCollection	ObjectCollectionProviderFilterBase.createFromObjects(ObjectCollection objects)
protected abstract ObjectCollection	ObjectCollectionProviderFilterBase.createFromObjects(ObjectCollection objects, Optional<List<ObjectMask>> objectsRejected, Optional<Dimensions> dimensions)	Creates an ObjectCollection from the given objects, potentially applying a filter and considering dimensions.
ObjectCollection	RemoveTouchingBorder.createFromObjects(ObjectCollection objects)
protected ObjectCollection	ObjectCollectionProviderFilterBase.filter(ObjectCollection objects, Optional<Dimensions> dimensions, Optional<List<ObjectMask>> objectsRejected)	Filters the given object collection using the specified filter.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.mask

Methods in org.anchoranalysis.plugin.image.bean.object.provider.mask that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	AndObjectsWithMasks.createFromObjects(ObjectCollection objects)
ObjectCollection	FromMask.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.merge

Methods in org.anchoranalysis.plugin.image.bean.object.provider.merge that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	MergeGreedyToIncreaseObjectFeature.createFromObjects(ObjectCollection objectsSource)
ObjectCollection	MergeWithFeature.createFromObjects(ObjectCollection objectsSource)
ObjectCollection	MergeTwoCollectionsItemwise.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.morphological

Methods in org.anchoranalysis.plugin.image.bean.object.provider.morphological that throw ProvisionFailedException

Modifier and Type	Method	Description
protected ObjectMask	Dilate.applyMorphologicalOperation(ObjectMask object, Optional<Extent> extent)
protected ObjectMask	Erode.applyMorphologicalOperation(ObjectMask object, Optional<Extent> extent)
protected abstract ObjectMask	ObjectCollectionProviderMorphological.applyMorphologicalOperation(ObjectMask object, Optional<Extent> extent)	Applies the morphological operation to a single ObjectMask.
ObjectCollection	ObjectCollectionProviderMorphological.createFromObjects(ObjectCollection objects)
protected Optional<Extent>	ObjectCollectionProviderMorphological.deriveExtent()	Derives the extent from the dimensions, if available.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.segment

Methods in org.anchoranalysis.plugin.image.bean.object.provider.segment that throw ProvisionFailedException

Modifier and Type	Method	Description
protected ObjectCollection	SegmentChannel.createFromChannel(Channel channelSource)
protected ObjectCollection	SegmentWithSeeds.createFromChannel(Channel channel)
protected ObjectCollection	BinarySegmentByObject.createFromObjects(ObjectCollection objectsSource, Channel channelSource)
ObjectCollection	SegmentChannelByObject.createFromObjects(ObjectCollection objectsSource, Channel channelToSegment)
ObjectCollection	SegmentStack.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.slice

Methods in org.anchoranalysis.plugin.image.bean.object.provider.slice that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	ExtendInZ.createFromObjects(ObjectCollection objects)
ObjectCollection	ExtendInZWithinContainer.createFromObjects(ObjectCollection objectsSource)
ObjectCollection	SliceAt.createFromObjects(ObjectCollection objects)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.object.provider.split

Methods in org.anchoranalysis.plugin.image.bean.object.provider.split that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	RemoveIntersectingVoxels.createFromObjects(ObjectCollection objects)
ObjectCollection	SplitByObjects.createFromObjects(ObjectCollection objectCollection)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.stack.provider

Methods in org.anchoranalysis.plugin.image.bean.stack.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Stack	Concatenate.get()
Stack	FromChannelOrMask.get()
Stack	Reference.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.bean.stack.provider.color

Methods in org.anchoranalysis.plugin.image.bean.stack.provider.color that throw ProvisionFailedException

Modifier and Type	Method	Description
static Stack	ThreeChannels.createRGBStack(Channel channelRed, Channel channelGreen, Channel channelBlue, VoxelDataType outputType)	Creates an RGB stack from up to three channels.
Stack	ColoredBase.get()
Stack	ThreeChannels.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.channel

Methods in org.anchoranalysis.plugin.image.channel that throw ProvisionFailedException

Modifier and Type	Method	Description
static void	DimensionsChecker.check(Channel channelToCheck, String channelToCheckName, Dimensions dimFromChannel)	Checks a channel to make sure it's the same size as an existing channel.
static void	DimensionsChecker.check(Channel channel, Mask mask)	Checks if a channel and a mask have the same dimensions.
static void	DimensionsChecker.check(Mask maskToCheck, String channelToCheckName, Dimensions dimensionsFromChannel)	Checks a mask to make sure it's the same size as an existing channel.
static Channel	DimensionsChecker.createSameSize(ChannelProvider provider, String providerName, Channel channelSameSize)	Creates a new channel from a provider, making sure it's the same size as an existing channel.
static Mask	DimensionsChecker.createSameSize(MaskProvider provider, String providerName, Channel channelSameSize)	Creates a new mask from a provider, making sure it's the same size as an existing channel.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.feature.bean.list

Methods in org.anchoranalysis.plugin.image.feature.bean.list that throw ProvisionFailedException

Modifier and Type	Method	Description
FeatureList<FeatureInputStack>	IntensityMoments.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.feature.bean.list.pair

Methods in org.anchoranalysis.plugin.image.feature.bean.list.pair that throw ProvisionFailedException

Modifier and Type	Method	Description
FeatureList<FeatureInputPairObjects>	DeriveFromPair.get()
FeatureList<FeatureInputPairObjects>	FeatureListProviderAggregatePair.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.image.feature.bean.list.permute

Methods in org.anchoranalysis.plugin.image.feature.bean.list.permute that throw ProvisionFailedException

Modifier and Type	Method	Description
protected PermuteFeature<Integer,T>	PermuteDivideByParam.createDelegate(Feature<T> feature)
protected abstract PermuteFeature<Integer,T>	PermuteFeatureSequenceInteger.createDelegate(Feature<T> feature)	Creates a delegate PermuteFeature for the given feature.
protected PermuteFeature<Integer,T>	PermuteFirstSecondOrder.createDelegate(Feature<T> feature)
protected FeatureList<T>	PermuteFeature.createPermutedFeaturesFor(Feature<T> feature)
protected abstract FeatureList<T>	PermuteFeatureBase.createPermutedFeaturesFor(Feature<T> feature)	Creates permuted features for the given feature.
protected FeatureList<T>	PermuteFeatureSequenceInteger.createPermutedFeaturesFor(Feature<T> feature)
FeatureList<T>	PermuteFeatureBase.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.imagej.bean.channel.provider

Methods in org.anchoranalysis.plugin.imagej.bean.channel.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
protected Channel	BackgroundSubtractor.createFromChannel(Channel channel, int radius)
Channel	WithFilterBase.createFromChannel(Channel channel, int radius)
Channel	WithRadiusBase.createFromChannel(Channel channel)
protected abstract Channel	WithRadiusBase.createFromChannel(Channel channel, int radius)	Creates a new channel from an existing channel and a radius.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter

Methods in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	EdgeFilterIJ.createFromChannel(Channel channel)
Channel	GaussianBlur2D.createFromChannel(Channel channel)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank

Methods in org.anchoranalysis.plugin.imagej.bean.channel.provider.filter.rank that throw ProvisionFailedException

Modifier and Type	Method	Description
Channel	MedianFilter3D.createFromChannel(Channel channel)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.imagej.bean.mask.provider

Methods in org.anchoranalysis.plugin.imagej.bean.mask.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Mask	FillHoles.createFromMask(Mask mask)
Mask	MorphologicalOperation.createFromMask(Mask mask)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.imagej.bean.object.provider

Methods in org.anchoranalysis.plugin.imagej.bean.object.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
protected ObjectCollection	DrawLineAlongConvexHull.createFromObjects(ObjectCollection objects)
ObjectCollection	FillHoles.createFromObjects(ObjectCollection objects)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.imagej.bean.stack.provider

Methods in org.anchoranalysis.plugin.imagej.bean.stack.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
Stack	MontageSlices.createFromStack(Stack stack)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.mpp.bean.object.provider

Methods in org.anchoranalysis.plugin.mpp.bean.object.provider that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	FromMarks.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.mpp.bean.provider.collection

Methods in org.anchoranalysis.plugin.mpp.bean.provider.collection that throw ProvisionFailedException

Modifier and Type	Method	Description
MarkCollection	FromSingleMark.get()
MarkCollection	PointsFromObjects.get()
MarkCollection	Reference.get()
MarkCollection	ReferenceOrEmpty.get()
MarkCollection	ScaleXY.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.opencv.bean.color

Methods in org.anchoranalysis.plugin.opencv.bean.color that throw ProvisionFailedException

Modifier and Type	Method	Description
Stack	ColorConverterBase.createFromStack(Stack stackRGB)

Uses of ProvisionFailedException in org.anchoranalysis.plugin.opencv.bean.feature

Methods in org.anchoranalysis.plugin.opencv.bean.feature that throw ProvisionFailedException

Modifier and Type	Method	Description
FeatureList<FeatureInputStack>	HOGDescriptor.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.points.bean

Methods in org.anchoranalysis.plugin.points.bean that throw ProvisionFailedException

Modifier and Type	Method	Description
ObjectCollection	SplitContourAtSaddlePoints.createFromObjects(ObjectCollection objects)
MarkCollection	FitPointsFromObjects.get()

Uses of ProvisionFailedException in org.anchoranalysis.plugin.points.bean.convexhull

Methods in org.anchoranalysis.plugin.points.bean.convexhull that throw ProvisionFailedException

Modifier and Type	Method	Description
protected Mask	ConvexHull2D.createFromMask(Mask mask, Mask outline)
Mask	ConvexHullBase.createFromMask(Mask mask)
protected abstract Mask	ConvexHullBase.createFromMask(Mask mask, Mask outline)	Creates a convex hull from a mask and its outline.

Uses of ProvisionFailedException in org.anchoranalysis.plugin.points.bean.fitter

Methods in org.anchoranalysis.plugin.points.bean.fitter that throw ProvisionFailedException

Modifier and Type	Method	Description
Dimensions	PointsFitterToMark.createDim()	Creates and returns the Dimensions using the specified provider.
ObjectCollection	PointsFitterToMark.createObjects()	Creates and returns the ObjectCollection using the specified provider.